Strain Fitness in Sphingobium sp. HT1-2 around GFF4675

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,670,816	+		GFF4674	0.14	-1.6
4,670,816	+		GFF4674	0.14	+1.1
4,670,816	+		GFF4674	0.14	+0.9
4,670,817	-		GFF4674	0.15	+0.7
4,670,818	-		GFF4674	0.15	-1.9
4,670,824	-		GFF4674	0.15	-1.4
4,670,824	-		GFF4674	0.15	+0.8
4,670,824	-		GFF4674	0.15	+1.2
4,670,853	+		GFF4674	0.18	-0.9
4,670,865	+		GFF4674	0.19	+0.1
4,670,873	-		GFF4674	0.19	-0.4
4,670,875	+		GFF4674	0.20	-0.1
4,670,923	+		GFF4674	0.24	+1.5
4,670,924	+		GFF4674	0.24	-0.9
4,670,931	-		GFF4674	0.24	+1.4
4,670,932	-		GFF4674	0.25	+0.1
4,670,936	-		GFF4674	0.25	+0.1
4,670,937	-		GFF4674	0.25	+1.1
4,670,942	+		GFF4674	0.25	+0.2
4,670,944	+		GFF4674	0.26	+0.1
4,670,947	+		GFF4674	0.26	-2.3
4,670,947	+		GFF4674	0.26	+1.0
4,670,947	+		GFF4674	0.26	-0.2
4,670,947	+		GFF4674	0.26	+0.6
4,670,950	-		GFF4674	0.26	+0.8
4,670,955	-		GFF4674	0.27	-1.4
4,670,955	-		GFF4674	0.27	-1.0
4,670,957	+		GFF4674	0.27	+0.0
4,670,962	+		GFF4674	0.27	+0.1
4,670,962	+		GFF4674	0.27	-2.5
4,670,962	+		GFF4674	0.27	+0.9
4,670,962	+		GFF4674	0.27	+1.0
4,670,965	-		GFF4674	0.27	+0.0
4,670,970	-		GFF4674	0.28	+0.6
4,670,970	-		GFF4674	0.28	+2.0
4,670,991	-		GFF4674	0.30	+0.1
4,671,002	+		GFF4674	0.31	-1.7
4,671,010	-		GFF4674	0.31	+0.3
4,671,035	+		GFF4674	0.34	+0.3
4,671,050	+		GFF4674	0.35	-2.0
4,671,050	+		GFF4674	0.35	-0.3
4,671,058	-		GFF4674	0.36	+0.7
4,671,058	-		GFF4674	0.36	-0.0
4,671,058	-		GFF4674	0.36	+0.7
4,671,058	-		GFF4674	0.36	-0.8
4,671,092	-		GFF4674	0.38	+2.3
4,671,122	-		GFF4674	0.41	+0.2
4,671,122	-		GFF4674	0.41	+0.8
4,671,127	-		GFF4674	0.41	+0.7
4,671,145	+		GFF4674	0.43	+0.5
4,671,145	+		GFF4674	0.43	-0.6
4,671,153	-		GFF4674	0.44	+0.0
4,671,155	+		GFF4674	0.44	-0.4
4,671,158	-		GFF4674	0.44	+1.4
4,671,163	-		GFF4674	0.45	+0.8
4,671,163	-		GFF4674	0.45	-0.3
4,671,166	-		GFF4674	0.45	-0.2
4,671,168	+		GFF4674	0.45	+0.6
4,671,168	+		GFF4674	0.45	+0.5
4,671,168	+		GFF4674	0.45	-0.3
4,671,173	+		GFF4674	0.45	-1.5
4,671,176	-		GFF4674	0.46	-0.4
4,671,176	-		GFF4674	0.46	-0.7
4,671,176	-		GFF4674	0.46	-0.5
4,671,183	-		GFF4674	0.46	+0.2
4,671,200	+		GFF4674	0.48	+0.3
4,671,200	+		GFF4674	0.48	+0.9
4,671,205	+		GFF4674	0.48	+0.8
4,671,209	-		GFF4674	0.49	-0.8
4,671,210	+		GFF4674	0.49	-1.9
4,671,214	+		GFF4674	0.49	+1.4
4,671,219	+		GFF4674	0.49	-0.4
4,671,223	-		GFF4674	0.50	+1.0
4,671,239	-		GFF4674	0.51	+0.5
4,671,263	-		GFF4674	0.53	+0.0
4,671,265	+		GFF4674	0.53	-0.4
4,671,265	+		GFF4674	0.53	+0.6
4,671,273	-		GFF4674	0.54	-0.4
4,671,273	-		GFF4674	0.54	+0.4
4,671,301	-		GFF4674	0.57	+0.7
4,671,321	-		GFF4674	0.58	+1.5
4,671,333	+		GFF4674	0.59	-1.0
4,671,333	+		GFF4674	0.59	-1.3
4,671,341	-		GFF4674	0.60	-1.1
4,671,341	-		GFF4674	0.60	+1.7
4,671,394	+		GFF4674	0.65	-2.2
4,671,394	+		GFF4674	0.65	-0.4
4,671,394	+		GFF4674	0.65	-1.9
4,671,402	-		GFF4674	0.65	+1.0
4,671,422	+		GFF4674	0.67	+1.1
4,671,431	+		GFF4674	0.68	+0.5
4,671,431	-		GFF4674	0.68	-1.1
4,671,436	+		GFF4674	0.68	-1.5
4,671,444	+		GFF4674	0.69	-0.1
4,671,444	-		GFF4674	0.69	-0.2
4,671,449	-		GFF4674	0.69	-0.6
4,671,450	-		GFF4674	0.70	+0.1
4,671,450	-		GFF4674	0.70	+0.2
4,671,483	+		GFF4674	0.72	+2.1
4,671,537	-		GFF4674	0.77	-0.5
4,671,545	-		GFF4674	0.78	-0.3
4,671,570	+		GFF4674	0.80	+0.3
4,671,578	-		GFF4674	0.81	-0.3
4,671,582	-		GFF4674	0.81	-0.1
4,671,610	+		GFF4674	0.83	-0.9
4,671,610	+		GFF4674	0.83	+0.2
4,671,610	+		GFF4674	0.83	+0.1
4,671,610	+		GFF4674	0.83	-1.5
4,671,610	+		GFF4674	0.83	-0.1
4,671,610	+		GFF4674	0.83	-1.2
4,671,618	-		GFF4674	0.84	-2.0
4,671,618	-		GFF4674	0.84	-0.4
4,671,633	+		GFF4674	0.85	-0.4
4,671,667	-		GFF4674	0.88	+0.3
4,671,669	+		GFF4674	0.89	+0.7
4,671,677	-		GFF4674	0.89	+0.1
4,671,677	-		GFF4674	0.89	-0.5
4,671,677	-		GFF4674	0.89	+0.1
4,671,677	-		GFF4674	0.89	-2.0
4,671,710	+				+0.8
4,671,710	+				+0.8
4,671,710	+				-0.1
4,671,718	-				+1.3
4,671,718	-				-1.0
4,671,718	-				+1.4
4,671,718	-				-2.3
4,671,754	-				-0.3
4,671,785	+				+1.1
4,671,785	+				+1.2
4,671,800	-				+0.7
4,671,804	-				-0.3
4,671,813	+				+0.9
4,671,813	+				-0.1
4,671,815	-				-0.5
4,671,821	-				+0.4
4,671,821	-				-1.4
4,671,821	-				-0.6
4,671,821	-				+1.4
4,671,821	-				+0.7
4,671,849	-				+0.8
4,671,849	-				-0.7
4,671,851	-				+1.0
4,671,865	+				+0.6
4,671,880	+				-0.0
4,671,890	-				+0.5
4,671,906	+		GFF4675	0.10	+0.6
4,671,913	+		GFF4675	0.11	-0.2
4,671,921	-		GFF4675	0.12	-0.6
4,671,930	-		GFF4675	0.13	-2.2
4,671,937	-		GFF4675	0.13	+0.9
4,671,976	+		GFF4675	0.17	+1.0
4,671,992	-		GFF4675	0.18	+0.7
4,672,065	-		GFF4675	0.25	-2.4
4,672,070	+		GFF4675	0.26	+0.8
4,672,078	-		GFF4675	0.27	+0.3
4,672,096	-		GFF4675	0.28	-0.9
4,672,115	-		GFF4675	0.30	+0.6
4,672,125	-		GFF4675	0.31	-0.4
4,672,125	-		GFF4675	0.31	+1.2
4,672,130	-		GFF4675	0.31	+1.6
4,672,133	-		GFF4675	0.32	+0.1
4,672,144	+		GFF4675	0.33	+0.3
4,672,163	+		GFF4675	0.35	+0.4
4,672,163	+		GFF4675	0.35	-0.7
4,672,182	-		GFF4675	0.36	+0.3
4,672,192	+		GFF4675	0.37	+0.3
4,672,192	+		GFF4675	0.37	-1.0
4,672,192	+		GFF4675	0.37	+0.7
4,672,192	+		GFF4675	0.37	+0.5
4,672,192	+		GFF4675	0.37	-1.5
4,672,192	+		GFF4675	0.37	+1.0
4,672,192	+		GFF4675	0.37	+1.2
4,672,193	+		GFF4675	0.37	-0.5
4,672,200	-		GFF4675	0.38	+1.8
4,672,200	-		GFF4675	0.38	+0.9
4,672,200	-		GFF4675	0.38	-0.0
4,672,206	-		GFF4675	0.39	+0.5
4,672,210	+		GFF4675	0.39	-0.3
4,672,231	-		GFF4675	0.41	+0.1
4,672,243	+		GFF4675	0.42	+1.0
4,672,243	+		GFF4675	0.42	+0.4
4,672,248	+		GFF4675	0.43	+0.7
4,672,249	-		GFF4675	0.43	+0.2
4,672,251	-		GFF4675	0.43	+1.5
4,672,251	-		GFF4675	0.43	+1.2
4,672,251	-		GFF4675	0.43	-0.0
4,672,256	-		GFF4675	0.43	-1.1
4,672,256	-		GFF4675	0.43	-1.7
4,672,271	-		GFF4675	0.45	-0.2
4,672,275	+		GFF4675	0.45	+1.0
4,672,277	+		GFF4675	0.45	+1.0
4,672,277	+		GFF4675	0.45	+1.3
4,672,277	+		GFF4675	0.45	+1.5
4,672,285	-		GFF4675	0.46	+0.6
4,672,317	+		GFF4675	0.49	-2.4
4,672,348	+		GFF4675	0.52	+0.5
4,672,352	-		GFF4675	0.52	+0.4
4,672,410	+		GFF4675	0.58	-0.4
4,672,410	+		GFF4675	0.58	+0.2
4,672,453	+		GFF4675	0.62	-0.1
4,672,481	-		GFF4675	0.65	-0.3
4,672,488	+		GFF4675	0.65	+0.3
4,672,522	+		GFF4675	0.68	+0.6
4,672,522	+		GFF4675	0.68	+1.7
4,672,522	+		GFF4675	0.68	-1.5
4,672,522	+		GFF4675	0.68	+0.8
4,672,522	+		GFF4675	0.68	-0.3
4,672,522	+		GFF4675	0.68	-0.5
4,672,522	+		GFF4675	0.68	+0.0
4,672,522	+		GFF4675	0.68	-0.4
4,672,522	+		GFF4675	0.68	+0.9
4,672,530	-		GFF4675	0.69	+0.6
4,672,530	-		GFF4675	0.69	+0.4
4,672,530	-		GFF4675	0.69	+0.1
4,672,530	-		GFF4675	0.69	-0.3
4,672,530	-		GFF4675	0.69	-1.2
4,672,530	-		GFF4675	0.69	-0.4
4,672,530	-		GFF4675	0.69	+0.5
4,672,530	-		GFF4675	0.69	+0.1
4,672,530	-		GFF4675	0.69	-0.3
4,672,541	-		GFF4675	0.70	-0.8
4,672,566	+		GFF4675	0.73	-0.8
4,672,566	+		GFF4675	0.73	+0.8
4,672,566	+		GFF4675	0.73	+0.5
4,672,566	+		GFF4675	0.73	+1.6
4,672,566	+		GFF4675	0.73	+1.2
4,672,566	+		GFF4675	0.73	+0.2
4,672,566	+		GFF4675	0.73	+0.9
4,672,566	+		GFF4675	0.73	+0.1
4,672,574	-		GFF4675	0.73	+0.7
4,672,574	-		GFF4675	0.73	-0.0
4,672,574	-		GFF4675	0.73	+0.8
4,672,574	-		GFF4675	0.73	-0.4
4,672,574	-		GFF4675	0.73	+0.5
4,672,574	-		GFF4675	0.73	+0.7
4,672,574	-		GFF4675	0.73	-0.6
4,672,574	-		GFF4675	0.73	+1.1
4,672,587	+		GFF4675	0.75	-0.2
4,672,595	-		GFF4675	0.75	-0.0
4,672,595	-		GFF4675	0.75	+0.3
4,672,595	-		GFF4675	0.75	-1.8
4,672,595	-		GFF4675	0.75	-0.5
4,672,612	+		GFF4675	0.77	-0.8
4,672,612	+		GFF4675	0.77	+0.1
4,672,628	+		GFF4675	0.78	-0.5
4,672,658	-		GFF4675	0.81	-1.7
4,672,676	-		GFF4675	0.83	+0.3
4,672,678	+		GFF4675	0.83	+1.1
4,672,678	+		GFF4675	0.83	+0.2
4,672,686	-		GFF4675	0.84	+0.5
4,672,686	-		GFF4675	0.84	+0.5
4,672,686	-		GFF4675	0.84	+0.8
4,672,688	+		GFF4675	0.84	+1.9
4,672,691	-		GFF4675	0.84	-1.5
4,672,691	-		GFF4675	0.84	+0.4
4,672,691	-		GFF4675	0.84	+1.2
4,672,738	+		GFF4675	0.89	-0.5
4,672,738	+		GFF4675	0.89	-1.5
4,672,738	+		GFF4675	0.89	-0.1
4,672,738	+		GFF4675	0.89	+1.3
4,672,738	+		GFF4675	0.89	-1.4
4,672,738	+		GFF4675	0.89	+0.5
4,672,746	-		GFF4675	0.90	+1.2
4,672,746	-		GFF4675	0.90	-0.3
4,672,746	-		GFF4675	0.90	-0.1
4,672,746	-		GFF4675	0.90	-0.5
4,672,751	+				+0.3
4,672,756	+				+1.4
4,672,756	+				+0.7
4,672,785	-				+0.9
4,672,787	+				-2.1
4,672,787	+				+0.7
4,672,787	+				+0.1
4,672,815	-				+1.4
4,672,830	-				-0.3
4,672,833	+				-1.8
4,672,833	+				+0.1
4,672,833	+				-0.3
4,672,833	+				+0.6
4,672,840	-				+0.8
4,672,840	-				+0.4
4,672,840	-				+0.1
4,672,841	-				+0.2
4,672,841	-				+0.7
4,672,932	-				-0.4
4,672,955	+				-0.6
4,672,955	+				+1.3
4,672,962	-				+0.7
4,672,963	-				+0.5
4,672,967	-				+1.4
4,672,967	-				+1.6
4,672,967	-				+0.4
4,672,979	+				+1.7
4,672,979	+				-0.0
4,672,979	+				+0.9
4,672,979	+				-0.7
4,672,989	+				+0.1
4,672,989	+				-0.4
4,672,989	+				-0.0
4,672,989	+				-0.7
4,672,997	-				+0.3
4,672,997	-				+0.1
4,673,014	+				+0.8
4,673,014	+				-1.0
4,673,022	+				+1.2
4,673,022	+				+0.7
4,673,022	+				+0.7
4,673,022	-				-0.3
4,673,022	-				+0.7
4,673,030	-				-1.9
4,673,030	-				+0.9
4,673,030	-				+1.3
4,673,030	-				-1.0
4,673,030	-				+1.5
4,673,032	-				-2.1
4,673,046	+				+0.8
4,673,054	-				-0.4
4,673,082	-				+1.1
4,673,099	-				+0.2
4,673,099	-				+0.1
4,673,099	-				+0.7
4,673,099	-				+0.6
4,673,099	-				+1.1
4,673,099	-				+0.1
4,673,117	-		GFF4676	0.10	-1.6
4,673,144	+		GFF4676	0.13	+1.4
4,673,144	+		GFF4676	0.13	+1.7
4,673,152	+		GFF4676	0.14	-0.1
4,673,152	-		GFF4676	0.14	-0.3
4,673,157	+		GFF4676	0.14	+0.0
4,673,158	-		GFF4676	0.15	+0.5
4,673,158	-		GFF4676	0.15	+0.5
4,673,202	-		GFF4676	0.20	+0.6
4,673,207	+		GFF4676	0.20	-0.6
4,673,207	+		GFF4676	0.20	+0.2
4,673,207	+		GFF4676	0.20	+1.7
4,673,207	+		GFF4676	0.20	-0.1
4,673,215	-		GFF4676	0.21	+0.3
4,673,215	-		GFF4676	0.21	-0.1
4,673,215	-		GFF4676	0.21	+0.1
4,673,216	-		GFF4676	0.21	+0.7
4,673,226	+		GFF4676	0.22	+0.1
4,673,227	+		GFF4676	0.22	+1.7
4,673,235	-		GFF4676	0.23	-1.5
4,673,244	+		GFF4676	0.24	+1.1
4,673,244	+		GFF4676	0.24	+0.5
4,673,244	+		GFF4676	0.24	+1.2
4,673,252	-		GFF4676	0.25	+1.8
4,673,252	-		GFF4676	0.25	-0.8
4,673,252	-		GFF4676	0.25	-0.2
4,673,262	+		GFF4676	0.26	-1.4
4,673,262	-		GFF4676	0.26	+1.2
4,673,271	+		GFF4676	0.27	-0.4
4,673,279	-		GFF4676	0.28	+1.0
4,673,279	-		GFF4676	0.28	+0.4
4,673,279	-		GFF4676	0.28	-1.0
4,673,317	+		GFF4676	0.32	-1.7
4,673,325	+		GFF4676	0.33	+1.4
4,673,330	+		GFF4676	0.34	-0.5
4,673,355	-		GFF4676	0.37	-1.5
4,673,366	-		GFF4676	0.38	-1.1
4,673,372	-		GFF4676	0.39	-0.7
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