Strain Fitness in Sphingobium sp. HT1-2 around GFF4656

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,656,274	-		GFF4655	0.71	-2.3
4,656,288	+		GFF4655	0.71	-1.6
4,656,288	-		GFF4655	0.71	-0.7
4,656,298	+		GFF4655	0.72	-0.7
4,656,311	+		GFF4655	0.72	+0.4
4,656,312	+		GFF4655	0.72	-0.6
4,656,323	+		GFF4655	0.73	+1.2
4,656,323	+		GFF4655	0.73	-0.8
4,656,323	+		GFF4655	0.73	+0.0
4,656,323	+		GFF4655	0.73	+0.5
4,656,323	+		GFF4655	0.73	-1.2
4,656,323	+		GFF4655	0.73	-1.1
4,656,331	-		GFF4655	0.73	-1.4
4,656,331	-		GFF4655	0.73	-1.0
4,656,331	-		GFF4655	0.73	+0.5
4,656,331	-		GFF4655	0.73	-0.3
4,656,331	-		GFF4655	0.73	-1.5
4,656,331	-		GFF4655	0.73	-1.6
4,656,331	-		GFF4655	0.73	+0.1
4,656,331	-		GFF4655	0.73	+0.7
4,656,355	+		GFF4655	0.74	-1.8
4,656,355	+		GFF4655	0.74	-0.7
4,656,357	-		GFF4655	0.74	-0.7
4,656,363	-		GFF4655	0.74	-1.1
4,656,363	-		GFF4655	0.74	-2.1
4,656,375	-		GFF4655	0.75	-0.8
4,656,380	-		GFF4655	0.75	-1.7
4,656,416	+		GFF4655	0.76	-2.2
4,656,416	+		GFF4655	0.76	-1.0
4,656,416	+		GFF4655	0.76	+0.7
4,656,416	+		GFF4655	0.76	+0.2
4,656,416	+		GFF4655	0.76	+0.5
4,656,422	-		GFF4655	0.76	-1.7
4,656,424	-		GFF4655	0.76	-1.3
4,656,424	-		GFF4655	0.76	-0.3
4,656,424	-		GFF4655	0.76	+0.3
4,656,424	-		GFF4655	0.76	-0.2
4,656,432	-		GFF4655	0.77	-0.5
4,656,434	+		GFF4655	0.77	-1.3
4,656,461	+		GFF4655	0.78	-2.8
4,656,471	+		GFF4655	0.78	-0.6
4,656,488	-		GFF4655	0.79	-1.1
4,656,489	-		GFF4655	0.79	+0.4
4,656,529	-		GFF4655	0.80	+0.9
4,656,531	+		GFF4655	0.80	-1.0
4,656,539	-		GFF4655	0.81	+0.9
4,656,545	+		GFF4655	0.81	+1.5
4,656,559	-		GFF4655	0.81	+0.8
4,656,576	-		GFF4655	0.82	+0.5
4,656,591	+		GFF4655	0.82	-1.4
4,656,591	+		GFF4655	0.82	-0.2
4,656,591	+		GFF4655	0.82	+1.7
4,656,591	+		GFF4655	0.82	-0.2
4,656,599	+		GFF4655	0.83	-0.7
4,656,599	-		GFF4655	0.83	+0.2
4,656,599	-		GFF4655	0.83	+1.1
4,656,599	-		GFF4655	0.83	-1.6
4,656,599	-		GFF4655	0.83	-0.1
4,656,601	+		GFF4655	0.83	+0.8
4,656,619	-		GFF4655	0.83	-0.2
4,656,619	-		GFF4655	0.83	-3.0
4,656,619	-		GFF4655	0.83	-0.3
4,656,629	-		GFF4655	0.84	-0.7
4,656,634	-		GFF4655	0.84	-0.6
4,656,653	-		GFF4655	0.85	+0.6
4,656,658	+		GFF4655	0.85	-0.7
4,656,697	-		GFF4655	0.86	+0.1
4,656,699	+		GFF4655	0.86	-0.3
4,656,710	-		GFF4655	0.87	+0.3
4,656,713	+		GFF4655	0.87	-0.1
4,656,713	+		GFF4655	0.87	+0.3
4,656,715	-		GFF4655	0.87	-1.0
4,656,721	-		GFF4655	0.87	-2.1
4,656,729	+		GFF4655	0.88	+0.2
4,656,769	+		GFF4655	0.89	-1.1
4,656,777	-		GFF4655	0.89	-0.5
4,656,792	+		GFF4655	0.90	-1.0
4,656,805	+				-0.3
4,656,813	+				+0.2
4,656,813	+				+0.0
4,656,820	+				-0.7
4,656,836	+				+0.5
4,656,839	+				+0.1
4,656,841	-				-1.1
4,656,847	-				-0.7
4,656,873	+				-0.8
4,656,873	+				+0.2
4,656,878	+				-0.2
4,656,881	-				-1.0
4,656,881	-				-0.8
4,656,881	-				+0.3
4,656,894	+				-1.2
4,656,907	-				+0.7
4,656,911	+				+0.6
4,656,912	+				-0.3
4,656,913	+				+0.2
4,656,923	+				-0.1
4,656,928	+				-0.5
4,656,928	+				-0.3
4,656,936	-				-0.1
4,656,936	-				-0.1
4,656,949	+				-0.5
4,656,957	-				-0.5
4,656,965	-				-2.7
4,656,968	+				-0.7
4,656,968	+				+1.2
4,656,968	+				+0.6
4,656,968	+				-1.1
4,656,970	-				+0.1
4,656,976	-				-0.4
4,656,995	+				-1.4
4,656,997	+				-0.2
4,656,997	+				-1.0
4,657,003	-				+1.3
4,657,005	-				+0.2
4,657,005	-				+0.5
4,657,007	+				-0.4
4,657,007	+				-1.2
4,657,007	+				+1.0
4,657,007	+				-0.6
4,657,015	-				-1.4
4,657,015	-				-0.5
4,657,015	-				-2.6
4,657,034	+				+1.2
4,657,072	+				-0.0
4,657,075	-				+0.6
4,657,079	+				-1.0
4,657,079	+				+0.1
4,657,087	-				+0.1
4,657,117	-				-0.9
4,657,146	+				+0.7
4,657,153	-				-0.3
4,657,156	+				+0.1
4,657,156	+				-0.2
4,657,164	-				+0.5
4,657,206	-				-0.3
4,657,213	+				+1.0
4,657,216	+				+0.6
4,657,223	-				-1.7
4,657,223	-				+0.3
4,657,274	-				-1.8
4,657,280	+				+0.3
4,657,292	+				+0.1
4,657,293	-				-0.5
4,657,295	-				-0.4
4,657,295	-				-1.7
4,657,317	-				-1.0
4,657,318	-				-1.5
4,657,318	-				-0.5
4,657,318	-				-0.1
4,657,365	+		GFF4656	0.18	+0.1
4,657,373	-		GFF4656	0.19	+1.2
4,657,374	-		GFF4656	0.19	-0.0
4,657,375	+		GFF4656	0.20	+0.0
4,657,377	+		GFF4656	0.20	-0.9
4,657,386	+		GFF4656	0.21	-0.4
4,657,386	+		GFF4656	0.21	-0.3
4,657,391	+		GFF4656	0.22	-0.1
4,657,394	-		GFF4656	0.23	+0.8
4,657,396	+		GFF4656	0.23	+1.7
4,657,396	+		GFF4656	0.23	+1.3
4,657,396	+		GFF4656	0.23	+0.6
4,657,396	+		GFF4656	0.23	-0.3
4,657,396	+		GFF4656	0.23	-0.6
4,657,396	+		GFF4656	0.23	-1.9
4,657,396	+		GFF4656	0.23	-0.5
4,657,396	+		GFF4656	0.23	+1.7
4,657,396	+		GFF4656	0.23	-2.6
4,657,396	+		GFF4656	0.23	-1.0
4,657,396	+		GFF4656	0.23	+0.1
4,657,396	+		GFF4656	0.23	+0.6
4,657,396	+		GFF4656	0.23	+0.6
4,657,396	+		GFF4656	0.23	-0.6
4,657,401	+		GFF4656	0.24	-2.4
4,657,402	-		GFF4656	0.24	+0.3
4,657,404	-		GFF4656	0.25	-0.3
4,657,404	-		GFF4656	0.25	-1.4
4,657,404	-		GFF4656	0.25	-0.5
4,657,404	-		GFF4656	0.25	-0.4
4,657,404	-		GFF4656	0.25	+0.4
4,657,404	-		GFF4656	0.25	-1.2
4,657,404	-		GFF4656	0.25	+0.5
4,657,404	-		GFF4656	0.25	-1.4
4,657,420	+		GFF4656	0.27	-2.9
4,657,423	+		GFF4656	0.28	-0.9
4,657,448	-		GFF4656	0.32	-0.0
4,657,448	-		GFF4656	0.32	-1.6
4,657,448	-		GFF4656	0.32	-0.9
4,657,455	-		GFF4656	0.34	-0.5
4,657,477	+		GFF4656	0.37	+0.3
4,657,482	+		GFF4656	0.38	-1.0
4,657,482	+		GFF4656	0.38	-0.8
4,657,482	+		GFF4656	0.38	-1.1
4,657,485	-		GFF4656	0.39	+0.8
4,657,485	-		GFF4656	0.39	-1.0
4,657,488	-		GFF4656	0.39	+1.2
4,657,490	-		GFF4656	0.40	-0.6
4,657,490	-		GFF4656	0.40	-0.3
4,657,490	-		GFF4656	0.40	+1.6
4,657,497	+		GFF4656	0.41	-2.6
4,657,500	-		GFF4656	0.41	+0.9
4,657,526	+		GFF4656	0.46	-0.0
4,657,529	-		GFF4656	0.46	-2.4
4,657,541	+		GFF4656	0.49	-0.7
4,657,561	+		GFF4656	0.52	-0.3
4,657,562	-		GFF4656	0.52	+1.2
4,657,616	-		GFF4656	0.62	+1.7
4,657,674	+		GFF4656	0.72	+1.0
4,657,674	+		GFF4656	0.72	-0.7
4,657,674	+		GFF4656	0.72	-0.6
4,657,674	+		GFF4656	0.72	+0.7
4,657,674	+		GFF4656	0.72	-0.5
4,657,674	+		GFF4656	0.72	+0.0
4,657,679	+		GFF4656	0.73	-0.5
4,657,679	+		GFF4656	0.73	-0.2
4,657,679	+		GFF4656	0.73	-1.8
4,657,682	-		GFF4656	0.73	+1.0
4,657,682	-		GFF4656	0.73	+1.0
4,657,682	-		GFF4656	0.73	-0.6
4,657,682	-		GFF4656	0.73	-1.7
4,657,682	-		GFF4656	0.73	-0.0
4,657,682	-		GFF4656	0.73	-0.5
4,657,715	+		GFF4656	0.79	-0.7
4,657,722	-		GFF4656	0.80	-0.3
4,657,723	-		GFF4656	0.80	-0.3
4,657,733	-		GFF4656	0.82	-0.0
4,657,744	+		GFF4656	0.84	-0.2
4,657,781	+				-0.4
4,657,789	-				+1.0
4,657,798	+				+0.5
4,657,806	-				+0.2
4,657,816	+				-2.4
4,657,848	+				+0.2
4,657,848	+				+0.2
4,657,867	+				-0.2
4,657,879	-				-1.4
4,657,881	+				-1.9
4,657,881	+				-1.9
4,657,896	+				-0.3
4,657,922	+				-0.8
4,657,931	+				+0.2
4,657,931	+				-1.2
4,657,951	+				-0.4
4,657,951	+				-0.2
4,657,972	-				+0.0
4,657,978	+				-1.2
4,658,006	-		GFF4657	0.10	+0.0
4,658,028	+		GFF4657	0.15	-1.4
4,658,036	-		GFF4657	0.17	+0.2
4,658,093	-		GFF4657	0.30	+0.4
4,658,124	-		GFF4657	0.37	-0.8
4,658,124	-		GFF4657	0.37	+0.2
4,658,124	-		GFF4657	0.37	-0.9
4,658,126	+		GFF4657	0.38	-1.3
4,658,134	+		GFF4657	0.40	+0.7
4,658,140	+		GFF4657	0.41	+1.2
4,658,140	+		GFF4657	0.41	+0.2
4,658,148	-		GFF4657	0.43	+0.1
4,658,148	-		GFF4657	0.43	+0.8
4,658,148	-		GFF4657	0.43	+0.5
4,658,148	-		GFF4657	0.43	-0.6
4,658,159	+		GFF4657	0.46	-0.3
4,658,159	+		GFF4657	0.46	-1.5
4,658,170	+		GFF4657	0.48	+0.5
4,658,176	+		GFF4657	0.49	-1.8
4,658,176	+		GFF4657	0.49	-1.8
4,658,285	+		GFF4657	0.74	-0.0
4,658,285	+		GFF4657	0.74	-0.1
4,658,285	+		GFF4657	0.74	+0.6
4,658,285	+		GFF4657	0.74	+0.1
4,658,288	-		GFF4657	0.75	+0.2
4,658,293	-		GFF4657	0.76	-0.2
4,658,293	-		GFF4657	0.76	-0.8
4,658,293	-		GFF4657	0.76	-1.7
4,658,293	-		GFF4657	0.76	-0.7
4,658,293	-		GFF4657	0.76	-0.6
4,658,293	-		GFF4657	0.76	-2.4
4,658,295	+		GFF4657	0.77	-0.3
4,658,310	-		GFF4657	0.80	-0.2
4,658,312	+		GFF4657	0.81	-2.2
4,658,315	-		GFF4657	0.81	-0.2
4,658,322	-		GFF4657	0.83	+0.4
4,658,324	+		GFF4657	0.83	-0.4
4,658,327	-		GFF4657	0.84	-0.9
4,658,329	+		GFF4657	0.85	+0.1
4,658,329	+		GFF4657	0.85	+0.1
4,658,329	+		GFF4657	0.85	-0.6
4,658,329	+		GFF4657	0.85	+1.2
4,658,329	+		GFF4657	0.85	-1.0
4,658,329	+		GFF4657	0.85	-0.4
4,658,329	+		GFF4657	0.85	+1.5
4,658,329	+		GFF4657	0.85	-0.3
4,658,329	+		GFF4657	0.85	-0.5
4,658,329	+		GFF4657	0.85	-0.5
4,658,329	+		GFF4657	0.85	-2.2
4,658,334	+		GFF4657	0.86	+0.9
4,658,334	+		GFF4657	0.86	+0.6
4,658,334	+		GFF4657	0.86	-0.6
4,658,337	-		GFF4657	0.86	-0.8
4,658,337	-		GFF4657	0.86	-0.3
4,658,337	-		GFF4657	0.86	-1.0
4,658,337	-		GFF4657	0.86	+0.2
4,658,337	-		GFF4657	0.86	-1.4
4,658,337	-		GFF4657	0.86	-0.4
4,658,337	-		GFF4657	0.86	-0.1
4,658,342	-		GFF4657	0.88	+0.5
4,658,342	-		GFF4657	0.88	+0.3
4,658,372	+				+0.8
4,658,372	+				-1.4
4,658,376	+				+0.2
4,658,376	+				-0.7
4,658,384	-				-1.0
4,658,391	+				+0.9
4,658,397	-				+0.4
4,658,399	-				-1.7
4,658,399	-				-1.8
4,658,424	+				+0.1
4,658,425	-				-0.4
4,658,432	-				+0.0
4,658,436	+				-0.2
4,658,436	+				+0.3
4,658,436	+				-0.4
4,658,436	+				+0.6
4,658,436	+				-0.0
4,658,436	+				-0.6
4,658,436	+				-0.8
4,658,436	+				-0.6
4,658,436	+				+1.3
4,658,444	-				-0.5
4,658,444	-				-0.7
4,658,444	-				-0.1
4,658,444	-				+0.4
4,658,444	-				+0.8
4,658,444	-				-0.0
4,658,444	-				-0.3
4,658,444	-				-0.2
4,658,444	-				+0.1
4,658,444	-				+0.8
4,658,444	-				+1.0
4,658,444	-				+0.1
4,658,444	-				+0.2
4,658,444	-				-0.2
4,658,444	-				+0.4
4,658,453	+				-0.2
4,658,473	+				+1.4
4,658,479	+				-2.1
4,658,514	-				-0.0
4,658,519	-				+0.1
4,658,527	-				-1.4
4,658,531	+				-1.1
4,658,554	-				-2.6
4,658,555	+				-0.2
4,658,562	+				-0.9
4,658,570	+				-0.2
4,658,570	-				-0.4
4,658,580	-				-0.2
4,658,602	-				-1.7
4,658,607	+				+1.4
4,658,608	+				+0.4
4,658,608	+				-0.7
4,658,615	-				-0.9
4,658,615	-				+1.1
4,658,616	-				-1.7
4,658,616	-				+0.1
4,658,616	-				-0.4
4,658,637	+				-1.0
4,658,638	+				+0.6
4,658,645	+				+0.5
4,658,646	-				+0.6
4,658,646	-				-0.5
4,658,653	-				-0.5
4,658,653	-				-1.2
4,658,663	+				-1.5
4,658,676	+				-2.5
4,658,676	+				-0.2
4,658,677	+				-0.3
4,658,677	+				+0.3
4,658,686	-				-0.6
4,658,703	+				-0.5
4,658,723	+				+1.0
4,658,734	+				-0.2
4,658,746	+				-0.6
4,658,746	+				-0.2
4,658,769	+				-0.7
4,658,769	+				+0.5
4,658,770	+				+0.1
4,658,802	-				+1.3
4,658,807	-				-1.5
4,658,816	+				+0.2
4,658,816	+				+0.7
4,658,816	+				-1.0
4,658,816	+				-0.3
4,658,816	+				-0.3