Strain Fitness in Sphingobium sp. HT1-2 around GFF4650

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,647,397	+		GFF4648	0.16	+0.7
4,647,403	-		GFF4648	0.17	+0.0
4,647,412	-		GFF4648	0.18	-0.3
4,647,445	-		GFF4648	0.24	-1.7
4,647,451	-		GFF4648	0.24	-0.4
4,647,453	+		GFF4648	0.25	-1.7
4,647,456	-		GFF4648	0.25	+0.3
4,647,458	+		GFF4648	0.26	+0.2
4,647,458	+		GFF4648	0.26	+0.3
4,647,458	+		GFF4648	0.26	+0.8
4,647,458	+		GFF4648	0.26	-0.2
4,647,466	+		GFF4648	0.27	+0.7
4,647,495	-		GFF4648	0.31	-2.2
4,647,557	+		GFF4648	0.41	+0.6
4,647,565	+		GFF4648	0.42	+0.7
4,647,565	+		GFF4648	0.42	-2.2
4,647,565	+		GFF4648	0.42	-0.5
4,647,565	+		GFF4648	0.42	-0.0
4,647,565	-		GFF4648	0.42	-1.0
4,647,566	-		GFF4648	0.42	-0.8
4,647,570	-		GFF4648	0.43	-0.4
4,647,573	-		GFF4648	0.43	+1.4
4,647,573	-		GFF4648	0.43	+0.0
4,647,573	-		GFF4648	0.43	-0.0
4,647,578	-		GFF4648	0.44	-0.9
4,647,578	-		GFF4648	0.44	+0.5
4,647,580	-		GFF4648	0.44	-0.1
4,647,580	-		GFF4648	0.44	+0.0
4,647,584	+		GFF4648	0.45	-2.1
4,647,585	+		GFF4648	0.45	+0.1
4,647,585	+		GFF4648	0.45	-2.1
4,647,614	+		GFF4648	0.50	-1.7
4,647,620	-		GFF4648	0.51	-0.8
4,647,629	+		GFF4648	0.52	-0.7
4,647,637	-		GFF4648	0.53	+0.2
4,647,642	+		GFF4648	0.54	+0.9
4,647,691	+		GFF4648	0.62	-0.4
4,647,691	+		GFF4648	0.62	-0.3
4,647,692	-		GFF4648	0.62	-0.5
4,647,692	-		GFF4648	0.62	+0.1
4,647,701	+		GFF4648	0.63	-2.1
4,647,704	+		GFF4648	0.64	-0.7
4,647,704	+		GFF4648	0.64	-0.0
4,647,704	+		GFF4648	0.64	+0.6
4,647,706	+		GFF4648	0.64	+0.3
4,647,706	+		GFF4648	0.64	+0.5
4,647,712	-		GFF4648	0.65	+1.0
4,647,714	+		GFF4648	0.65	+0.1
4,647,714	-		GFF4648	0.65	-1.7
4,647,714	-		GFF4648	0.65	+1.2
4,647,731	+		GFF4648	0.68	+1.5
4,647,731	+		GFF4648	0.68	+0.9
4,647,731	+		GFF4648	0.68	-0.3
4,647,739	-		GFF4648	0.69	+0.0
4,647,758	-		GFF4648	0.72	+0.3
4,647,759	-		GFF4648	0.72	-1.0
4,647,763	+		GFF4648	0.73	+1.7
4,647,773	+		GFF4648	0.74	-1.7
4,647,777	+		GFF4648	0.75	+0.1
4,647,781	-		GFF4648	0.76	-0.2
4,647,804	-		GFF4648	0.79	-0.6
4,647,806	+		GFF4648	0.80	-0.1
4,647,806	+		GFF4648	0.80	-0.4
4,647,806	+		GFF4648	0.80	-1.7
4,647,806	+		GFF4648	0.80	+0.0
4,647,814	-		GFF4648	0.81	-1.5
4,647,829	-		GFF4648	0.83	-0.4
4,647,832	+		GFF4648	0.84	+0.5
4,647,833	+		GFF4648	0.84	+0.5
4,647,833	+		GFF4648	0.84	-2.4
4,647,840	-		GFF4648	0.85	+0.4
4,647,857	+		GFF4648	0.87	+0.3
4,647,865	-		GFF4648	0.89	+0.4
4,647,891	-				+0.6
4,647,925	-				-1.8
4,647,935	-				-0.1
4,647,935	-				-1.1
4,647,940	-				-0.6
4,647,943	+				+0.8
4,647,979	+				-0.3
4,647,984	+				+0.7
4,648,030	+				+0.0
4,648,036	-				+0.7
4,648,040	+				+0.2
4,648,040	+				-0.5
4,648,040	+				-1.1
4,648,040	+				-1.6
4,648,056	+				-0.8
4,648,057	-				-0.4
4,648,062	-				-1.6
4,648,076	-				-1.2
4,648,081	-		GFF4649	0.11	-0.1
4,648,083	+		GFF4649	0.12	-0.5
4,648,119	-		GFF4649	0.23	-1.1
4,648,131	+		GFF4649	0.27	-0.3
4,648,131	+		GFF4649	0.27	-0.9
4,648,134	-		GFF4649	0.27	-1.0
4,648,140	+		GFF4649	0.29	-0.4
4,648,141	-		GFF4649	0.30	-0.3
4,648,147	-		GFF4649	0.31	-0.6
4,648,176	+		GFF4649	0.40	-1.2
4,648,179	-		GFF4649	0.41	+0.3
4,648,184	-		GFF4649	0.43	+0.6
4,648,209	+		GFF4649	0.51	-1.1
4,648,209	+		GFF4649	0.51	-0.3
4,648,209	+		GFF4649	0.51	-1.1
4,648,209	+		GFF4649	0.51	-0.3
4,648,209	+		GFF4649	0.51	+0.1
4,648,209	+		GFF4649	0.51	-0.2
4,648,209	+		GFF4649	0.51	-1.7
4,648,209	+		GFF4649	0.51	-0.3
4,648,209	+		GFF4649	0.51	-1.1
4,648,209	+		GFF4649	0.51	-2.4
4,648,217	-		GFF4649	0.53	-0.4
4,648,217	-		GFF4649	0.53	+0.1
4,648,217	-		GFF4649	0.53	+0.8
4,648,217	-		GFF4649	0.53	-0.6
4,648,217	-		GFF4649	0.53	-1.6
4,648,217	-		GFF4649	0.53	-0.6
4,648,217	-		GFF4649	0.53	-1.5
4,648,217	-		GFF4649	0.53	+0.2
4,648,217	-		GFF4649	0.53	-1.8
4,648,217	-		GFF4649	0.53	+0.5
4,648,232	+		GFF4649	0.58	-0.5
4,648,235	-		GFF4649	0.59	+0.4
4,648,235	-		GFF4649	0.59	-0.1
4,648,240	-		GFF4649	0.60	+0.0
4,648,240	-		GFF4649	0.60	-0.4
4,648,240	-		GFF4649	0.60	-1.9
4,648,240	-		GFF4649	0.60	-0.2
4,648,246	+		GFF4649	0.62	+1.0
4,648,282	+		GFF4649	0.73	+0.1
4,648,292	+		GFF4649	0.76	-1.5
4,648,308	+		GFF4649	0.81	+1.2
4,648,317	-		GFF4649	0.84	-0.4
4,648,338	+				+0.4
4,648,362	+				-0.6
4,648,362	+				+0.0
4,648,362	+				-1.8
4,648,362	+				+0.5
4,648,362	+				+0.6
4,648,362	+				+0.1
4,648,362	+				-1.4
4,648,362	+				+0.2
4,648,365	-				-1.0
4,648,370	-				-1.3
4,648,370	-				-1.0
4,648,370	-				-2.0
4,648,370	-				+0.1
4,648,370	-				+0.0
4,648,370	-				-0.8
4,648,370	-				-0.5
4,648,370	-				+0.5
4,648,370	-				-0.8
4,648,370	-				+0.6
4,648,379	+				-1.2
4,648,398	-				-1.0
4,648,404	+				+0.8
4,648,404	-				-0.1
4,648,420	+				+0.0
4,648,438	-				-1.9
4,648,455	-				-1.5
4,648,485	+				+0.2
4,648,493	-				+0.3
4,648,529	+		GFF4650	0.12	-0.1
4,648,535	-		GFF4650	0.13	+0.2
4,648,535	-		GFF4650	0.13	-1.3
4,648,535	-		GFF4650	0.13	+0.3
4,648,537	+		GFF4650	0.13	+0.2
4,648,537	-		GFF4650	0.13	+0.6
4,648,545	-		GFF4650	0.14	-0.3
4,648,565	+		GFF4650	0.15	-0.8
4,648,572	-		GFF4650	0.16	+0.5
4,648,573	-		GFF4650	0.16	+0.1
4,648,573	-		GFF4650	0.16	-1.7
4,648,573	-		GFF4650	0.16	+0.2
4,648,576	+		GFF4650	0.16	-0.9
4,648,609	-		GFF4650	0.19	-0.1
4,648,639	-		GFF4650	0.21	+0.3
4,648,640	+		GFF4650	0.21	-1.1
4,648,640	-		GFF4650	0.21	+0.1
4,648,693	-		GFF4650	0.26	+0.2
4,648,748	-		GFF4650	0.30	-2.0
4,648,757	+		GFF4650	0.31	-1.1
4,648,764	+		GFF4650	0.31	-0.8
4,648,765	-		GFF4650	0.32	-0.7
4,648,788	+		GFF4650	0.33	-0.9
4,648,801	-		GFF4650	0.34	-0.3
4,648,844	-		GFF4650	0.38	-1.4
4,648,859	-		GFF4650	0.39	+0.8
4,648,859	-		GFF4650	0.39	+0.6
4,648,874	+		GFF4650	0.40	+0.3
4,648,875	-		GFF4650	0.41	-0.7
4,648,877	+		GFF4650	0.41	+1.1
4,648,886	+		GFF4650	0.41	+0.2
4,648,892	+		GFF4650	0.42	-0.4
4,648,914	-		GFF4650	0.44	-1.1
4,648,927	+		GFF4650	0.45	+1.2
4,648,931	+		GFF4650	0.45	-0.5
4,648,934	-		GFF4650	0.45	+1.3
4,648,939	-		GFF4650	0.46	-0.6
4,648,961	-		GFF4650	0.48	+0.4
4,648,962	-		GFF4650	0.48	-1.8
4,648,968	-		GFF4650	0.48	-1.9
4,648,975	+		GFF4650	0.49	+0.3
4,648,977	+		GFF4650	0.49	+0.1
4,648,983	-		GFF4650	0.49	+0.2
4,648,987	+		GFF4650	0.50	-0.0
4,648,995	-		GFF4650	0.50	-0.3
4,648,997	+		GFF4650	0.51	-0.4
4,649,017	-		GFF4650	0.52	+0.1
4,649,020	+		GFF4650	0.52	-2.4
4,649,020	+		GFF4650	0.52	-1.1
4,649,020	+		GFF4650	0.52	-1.7
4,649,031	+		GFF4650	0.53	-2.0
4,649,081	-		GFF4650	0.57	+0.0
4,649,122	-		GFF4650	0.61	+0.9
4,649,129	+		GFF4650	0.61	+0.7
4,649,140	+		GFF4650	0.62	-1.1
4,649,144	-		GFF4650	0.63	-0.0
4,649,150	+		GFF4650	0.63	+0.8
4,649,214	+		GFF4650	0.68	-0.1
4,649,219	+		GFF4650	0.69	+0.5
4,649,227	-		GFF4650	0.69	+0.1
4,649,227	-		GFF4650	0.69	-1.1
4,649,239	-		GFF4650	0.70	-0.0
4,649,276	+		GFF4650	0.73	+0.4
4,649,284	+		GFF4650	0.74	-1.0
4,649,312	+		GFF4650	0.76	+0.1
4,649,312	+		GFF4650	0.76	+0.1
4,649,330	+		GFF4650	0.78	-1.6
4,649,338	-		GFF4650	0.78	+0.5
4,649,338	-		GFF4650	0.78	-1.2
4,649,351	+		GFF4650	0.80	-0.9
4,649,351	-		GFF4650	0.80	-0.7
4,649,362	+		GFF4650	0.80	-0.8
4,649,379	+		GFF4650	0.82	-2.6
4,649,379	+		GFF4650	0.82	-0.3
4,649,394	+		GFF4650	0.83	-1.7
4,649,394	+		GFF4650	0.83	-0.7
4,649,402	-		GFF4650	0.84	+0.2
4,649,402	-		GFF4650	0.84	-0.4
4,649,413	+		GFF4650	0.85	+0.8
4,649,418	+		GFF4650	0.85	+0.0
4,649,418	+		GFF4650	0.85	-0.3
4,649,418	+		GFF4650	0.85	-0.2
4,649,421	-		GFF4650	0.85	-1.9
4,649,421	-		GFF4650	0.85	-0.9
4,649,439	+		GFF4650	0.87	+1.1
4,649,439	+		GFF4650	0.87	+0.4
4,649,439	+		GFF4650	0.87	+0.1
4,649,439	+		GFF4650	0.87	-0.3
4,649,439	+		GFF4650	0.87	-0.5
4,649,439	+		GFF4650	0.87	-1.6
4,649,439	+		GFF4650	0.87	+0.2
4,649,439	+		GFF4650	0.87	+0.3
4,649,439	+		GFF4650	0.87	-0.7
4,649,439	+		GFF4650	0.87	+0.5
4,649,439	+		GFF4650	0.87	+0.0
4,649,439	+		GFF4650	0.87	-0.9
4,649,439	+		GFF4650	0.87	+0.5
4,649,447	-		GFF4650	0.87	-0.4
4,649,447	-		GFF4650	0.87	-0.0
4,649,447	-		GFF4650	0.87	-0.5
4,649,447	-		GFF4650	0.87	+0.2
4,649,447	-		GFF4650	0.87	-2.4
4,649,447	-		GFF4650	0.87	-0.9
4,649,447	-		GFF4650	0.87	+0.7
4,649,447	-		GFF4650	0.87	-0.7
4,649,447	-		GFF4650	0.87	-0.2
4,649,447	-		GFF4650	0.87	-0.1
4,649,447	-		GFF4650	0.87	-0.4
4,649,462	+		GFF4650	0.89	+0.5
4,649,470	+		GFF4650	0.89	-1.1
4,649,470	+		GFF4650	0.89	-0.0
4,649,470	+		GFF4650	0.89	+0.8
4,649,470	+		GFF4650	0.89	-1.7
4,649,477	+		GFF4650	0.90	-1.4
4,649,477	+		GFF4650	0.90	-1.2
4,649,477	-		GFF4650	0.90	+0.3
4,649,478	-		GFF4650	0.90	+0.0
4,649,490	+				-0.8
4,649,496	+				-0.1
4,649,511	+				-1.6
4,649,519	-				+0.8
4,649,535	+				-1.2
4,649,549	+				-0.4
4,649,554	+				-0.1
4,649,554	+				-1.4
4,649,554	+				-2.7
4,649,599	-				-1.0
4,649,632	+				-0.2
4,649,632	+				-0.6
4,649,632	+				+1.4
4,649,632	+				+0.2
4,649,634	-				+0.3
4,649,650	-				-0.2
4,649,652	-				-0.4
4,649,652	-				-0.4
4,649,654	-				-0.1
4,649,662	-				+1.2
4,649,792	+				-0.0
4,649,797	+				-0.6
4,649,797	+				-0.8
4,649,800	-				+0.6
4,649,800	-				-0.2
4,649,800	-				-0.1
4,649,800	-				+0.8
4,649,823	-				-1.6
4,649,825	+				-0.4
4,649,831	+				-0.0
4,649,833	+				-0.2
4,649,837	-				-0.9
4,649,837	-				-2.4
4,649,846	+				-0.2
4,649,878	+				-1.4
4,649,917	-				-2.0
4,649,934	-				-0.1
4,649,953	-				-1.9
4,649,978	-				+0.1
4,649,982	+				+1.0
4,649,982	+				+0.5
4,649,982	+				-1.6
4,649,990	-				+0.1
4,649,990	-				-2.0
4,649,990	-				+0.1
4,649,990	-				-0.2
4,649,990	-				-0.2
4,649,990	-				+0.7
4,649,990	-				+0.3
4,649,990	-				-0.5
4,649,990	-				-0.2
4,649,991	-				-0.2
4,649,995	+				+0.4
4,650,021	-				+0.8
4,650,021	-				-0.1
4,650,032	+				-0.6
4,650,047	+				-0.4
4,650,047	+				-0.5
4,650,055	-				+0.3
4,650,069	+				-0.1
4,650,074	+				+1.0
4,650,082	-				-0.3
4,650,082	-				-0.1
4,650,082	-				+0.1
4,650,084	+				-0.8
4,650,084	+				+0.0
4,650,084	+				-1.0
4,650,084	+				+0.6
4,650,084	+				+0.4
4,650,084	+				-2.0
4,650,098	+				-1.0
4,650,173	+				-1.6
4,650,186	+				-0.5
4,650,192	-				+0.8
4,650,197	-				+1.0
4,650,231	-				-1.3
4,650,243	-				-0.2
4,650,243	-				-1.6
4,650,558	+				-0.3
4,650,573	+				+0.4
4,650,591	+				-0.9