Strain Fitness in Sphingobium sp. HT1-2 around GFF4647

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,645,212	-		GFF4645	0.24	+1.4
4,645,233	-		GFF4645	0.28	+0.1
4,645,235	+		GFF4645	0.28	-0.7
4,645,248	-		GFF4645	0.30	-0.2
4,645,268	-		GFF4645	0.33	+0.0
4,645,269	-		GFF4645	0.34	-1.1
4,645,287	+		GFF4645	0.37	+1.2
4,645,296	+		GFF4645	0.38	-1.5
4,645,297	+		GFF4645	0.38	+1.7
4,645,297	+		GFF4645	0.38	-0.6
4,645,297	+		GFF4645	0.38	-1.3
4,645,297	+		GFF4645	0.38	-1.0
4,645,297	+		GFF4645	0.38	-2.5
4,645,297	+		GFF4645	0.38	-1.0
4,645,297	+		GFF4645	0.38	+0.3
4,645,300	-		GFF4645	0.39	-1.3
4,645,300	-		GFF4645	0.39	+0.7
4,645,304	+		GFF4645	0.39	-1.0
4,645,304	-		GFF4645	0.39	-1.1
4,645,305	-		GFF4645	0.40	-0.2
4,645,305	-		GFF4645	0.40	+0.4
4,645,312	-		GFF4645	0.41	+0.1
4,645,329	+		GFF4645	0.43	-0.2
4,645,345	+		GFF4645	0.46	-1.5
4,645,345	+		GFF4645	0.46	+0.4
4,645,363	-		GFF4645	0.49	+0.1
4,645,394	+		GFF4645	0.54	+0.9
4,645,471	+		GFF4645	0.67	-1.8
4,645,478	+		GFF4645	0.68	-0.8
4,645,478	+		GFF4645	0.68	+0.6
4,645,478	+		GFF4645	0.68	+1.2
4,645,478	+		GFF4645	0.68	+0.5
4,645,479	-		GFF4645	0.68	-0.5
4,645,486	-		GFF4645	0.69	-0.3
4,645,486	-		GFF4645	0.69	+0.3
4,645,486	-		GFF4645	0.69	-0.8
4,645,486	-		GFF4645	0.69	+1.4
4,645,523	-		GFF4645	0.75	+0.7
4,645,552	-		GFF4645	0.80	+0.5
4,645,558	+		GFF4645	0.81	-0.6
4,645,566	-		GFF4645	0.82	+0.0
4,645,566	-		GFF4645	0.82	-0.3
4,645,566	-		GFF4645	0.82	+1.2
4,645,571	+		GFF4645	0.83	-1.4
4,645,571	+		GFF4645	0.83	-0.5
4,645,574	-		GFF4645	0.83	+0.2
4,645,579	-		GFF4645	0.84	+0.1
4,645,579	-		GFF4645	0.84	+0.7
4,645,579	-		GFF4645	0.84	+1.2
4,645,598	+		GFF4645	0.87	-0.1
4,645,603	+		GFF4645	0.88	+0.9
4,645,605	+		GFF4645	0.88	-0.4
4,645,612	+		GFF4645	0.89	-2.6
4,645,613	-		GFF4645	0.90	-1.3
4,645,620	-				-0.6
4,645,637	+				-0.2
4,645,648	+				-0.0
4,645,663	-				-1.1
4,645,679	-				-0.8
4,645,679	-				+0.1
4,645,679	-				+0.4
4,645,689	-				+1.8
4,645,689	-				+0.5
4,645,711	-				+0.6
4,645,711	-				-0.7
4,645,711	-				-1.1
4,645,718	+				-0.4
4,645,722	-		GFF4646	0.11	+0.9
4,645,761	+		GFF4646	0.19	+0.1
4,645,783	+		GFF4646	0.24	-1.7
4,645,788	+		GFF4646	0.25	-0.1
4,645,788	+		GFF4646	0.25	+1.5
4,645,788	+		GFF4646	0.25	+1.0
4,645,788	+		GFF4646	0.25	-1.5
4,645,788	+		GFF4646	0.25	-0.1
4,645,788	+		GFF4646	0.25	+0.2
4,645,791	-		GFF4646	0.26	+0.7
4,645,793	+		GFF4646	0.26	+1.1
4,645,795	+		GFF4646	0.27	-1.2
4,645,796	-		GFF4646	0.27	+1.7
4,645,796	-		GFF4646	0.27	+0.7
4,645,796	-		GFF4646	0.27	+0.2
4,645,796	-		GFF4646	0.27	+0.9
4,645,801	-		GFF4646	0.28	+0.1
4,645,801	-		GFF4646	0.28	-0.3
4,645,807	+		GFF4646	0.29	-0.7
4,645,807	+		GFF4646	0.29	+0.2
4,645,807	+		GFF4646	0.29	+0.4
4,645,810	-		GFF4646	0.30	+0.1
4,645,810	-		GFF4646	0.30	-0.8
4,645,815	-		GFF4646	0.31	+0.9
4,645,815	-		GFF4646	0.31	+1.0
4,645,815	-		GFF4646	0.31	-0.6
4,645,815	-		GFF4646	0.31	+0.1
4,645,815	-		GFF4646	0.31	+0.4
4,645,837	+		GFF4646	0.36	-1.4
4,645,847	+		GFF4646	0.38	-0.5
4,645,847	+		GFF4646	0.38	-0.6
4,645,847	+		GFF4646	0.38	-0.3
4,645,847	+		GFF4646	0.38	-1.3
4,645,847	+		GFF4646	0.38	-0.4
4,645,847	+		GFF4646	0.38	-0.4
4,645,847	+		GFF4646	0.38	-1.9
4,645,847	+		GFF4646	0.38	-1.2
4,645,847	+		GFF4646	0.38	-1.9
4,645,855	-		GFF4646	0.40	+0.1
4,645,855	-		GFF4646	0.40	+0.1
4,645,855	-		GFF4646	0.40	-0.5
4,645,855	-		GFF4646	0.40	-0.5
4,645,855	-		GFF4646	0.40	+0.0
4,645,855	-		GFF4646	0.40	-1.6
4,645,855	-		GFF4646	0.40	-0.2
4,645,855	-		GFF4646	0.40	+1.1
4,645,855	-		GFF4646	0.40	+0.9
4,645,855	-		GFF4646	0.40	-1.0
4,645,855	-		GFF4646	0.40	+0.1
4,645,855	-		GFF4646	0.40	-1.4
4,645,855	-		GFF4646	0.40	-0.2
4,645,855	-		GFF4646	0.40	-0.1
4,645,855	-		GFF4646	0.40	+0.1
4,645,868	-		GFF4646	0.43	+1.3
4,645,870	-		GFF4646	0.43	-1.2
4,645,872	+		GFF4646	0.44	-2.0
4,645,873	+		GFF4646	0.44	-0.5
4,645,873	+		GFF4646	0.44	-0.7
4,645,882	+		GFF4646	0.46	-0.8
4,645,882	+		GFF4646	0.46	-0.4
4,645,890	-		GFF4646	0.48	-2.7
4,645,890	-		GFF4646	0.48	-0.9
4,645,890	-		GFF4646	0.48	+0.5
4,645,938	-		GFF4646	0.58	-0.8
4,645,938	-		GFF4646	0.58	-0.6
4,645,949	-		GFF4646	0.61	-0.2
4,645,949	-		GFF4646	0.61	+0.6
4,645,971	-		GFF4646	0.65	-0.3
4,645,982	+		GFF4646	0.68	-0.2
4,645,990	-		GFF4646	0.70	+0.4
4,646,002	+		GFF4646	0.72	-0.9
4,646,010	-		GFF4646	0.74	-1.3
4,646,015	-		GFF4646	0.75	-0.7
4,646,033	-		GFF4646	0.79	+0.1
4,646,033	-		GFF4646	0.79	-1.5
4,646,050	+		GFF4646	0.83	-2.1
4,646,050	-		GFF4646	0.83	+0.9
4,646,055	-		GFF4646	0.84	-0.2
4,646,075	+		GFF4646	0.88	+0.1
4,646,075	+		GFF4646	0.88	+0.4
4,646,076	-		GFF4646	0.88	+0.4
4,646,076	-		GFF4646	0.88	+0.1
4,646,083	-				+0.6
4,646,095	+				-1.1
4,646,095	+				+0.8
4,646,106	+				-0.2
4,646,135	+				-2.1
4,646,135	+				+0.3
4,646,135	+				+0.6
4,646,135	+				-0.8
4,646,135	+				+1.2
4,646,135	+				-1.5
4,646,135	+				+0.1
4,646,143	-				-0.9
4,646,143	-				+1.4
4,646,143	-				+0.3
4,646,143	-				-2.2
4,646,143	-				-1.9
4,646,143	-				-0.7
4,646,143	-				+0.6
4,646,143	-				-1.1
4,646,144	+				-0.0
4,646,178	-				+0.6
4,646,192	+				+0.6
4,646,207	+				+0.9
4,646,215	-				-0.6
4,646,234	-				-1.4
4,646,246	-				-1.4
4,646,249	-				-1.5
4,646,252	+				+0.3
4,646,252	+				-1.8
4,646,255	-				-1.0
4,646,256	-				+0.2
4,646,257	+				-1.4
4,646,260	-				+1.2
4,646,260	-				-1.6
4,646,265	-				+1.2
4,646,265	-				+0.1
4,646,265	-				-1.4
4,646,282	+				-0.2
4,646,290	-				+0.5
4,646,290	-				+1.5
4,646,290	-				-0.8
4,646,298	-				-0.4
4,646,318	+				+1.0
4,646,318	+				-2.2
4,646,326	-		GFF4647	0.11	-0.7
4,646,342	-		GFF4647	0.12	-2.2
4,646,359	+		GFF4647	0.14	-1.5
4,646,359	+		GFF4647	0.14	-1.4
4,646,359	+		GFF4647	0.14	-0.1
4,646,359	+		GFF4647	0.14	+0.9
4,646,359	+		GFF4647	0.14	+0.6
4,646,359	+		GFF4647	0.14	-1.6
4,646,365	+		GFF4647	0.14	-0.4
4,646,365	+		GFF4647	0.14	+1.0
4,646,367	-		GFF4647	0.14	-0.3
4,646,367	-		GFF4647	0.14	-0.6
4,646,373	-		GFF4647	0.15	-2.2
4,646,405	+		GFF4647	0.18	-0.5
4,646,410	+		GFF4647	0.18	-1.4
4,646,410	+		GFF4647	0.18	-0.0
4,646,440	+		GFF4647	0.21	+0.9
4,646,448	-		GFF4647	0.22	-1.6
4,646,450	+		GFF4647	0.22	-0.3
4,646,453	-		GFF4647	0.22	+0.6
4,646,458	-		GFF4647	0.23	+0.3
4,646,458	-		GFF4647	0.23	+0.4
4,646,481	-		GFF4647	0.25	-0.7
4,646,490	+		GFF4647	0.26	-0.1
4,646,492	+		GFF4647	0.26	-0.3
4,646,496	-		GFF4647	0.26	+0.0
4,646,504	+		GFF4647	0.27	-1.2
4,646,504	+		GFF4647	0.27	-0.1
4,646,504	+		GFF4647	0.27	-1.8
4,646,505	-		GFF4647	0.27	-1.0
4,646,509	+		GFF4647	0.27	+0.2
4,646,512	-		GFF4647	0.28	-1.4
4,646,512	-		GFF4647	0.28	+1.3
4,646,512	-		GFF4647	0.28	-0.4
4,646,512	-		GFF4647	0.28	-1.6
4,646,512	-		GFF4647	0.28	-0.0
4,646,516	+		GFF4647	0.28	+0.1
4,646,523	+		GFF4647	0.29	-0.2
4,646,529	-		GFF4647	0.29	-0.2
4,646,579	-		GFF4647	0.34	+0.1
4,646,584	+		GFF4647	0.34	-0.5
4,646,584	+		GFF4647	0.34	+0.1
4,646,592	-		GFF4647	0.35	+0.3
4,646,592	-		GFF4647	0.35	-0.4
4,646,597	-		GFF4647	0.36	-0.1
4,646,610	+		GFF4647	0.37	-1.8
4,646,659	-		GFF4647	0.41	-1.6
4,646,709	-		GFF4647	0.46	-0.6
4,646,709	-		GFF4647	0.46	+0.7
4,646,716	+		GFF4647	0.47	-0.9
4,646,722	-		GFF4647	0.47	-0.6
4,646,757	-		GFF4647	0.50	+1.4
4,646,766	+		GFF4647	0.51	+0.0
4,646,779	-		GFF4647	0.52	+0.2
4,646,779	-		GFF4647	0.52	-0.9
4,646,782	+		GFF4647	0.53	-1.5
4,646,790	-		GFF4647	0.53	-1.4
4,646,792	+		GFF4647	0.53	-0.0
4,646,792	+		GFF4647	0.53	+0.7
4,646,792	+		GFF4647	0.53	+0.2
4,646,792	+		GFF4647	0.53	+0.2
4,646,792	+		GFF4647	0.53	-1.4
4,646,792	+		GFF4647	0.53	+0.0
4,646,792	+		GFF4647	0.53	-0.3
4,646,792	+		GFF4647	0.53	+0.8
4,646,792	+		GFF4647	0.53	-0.3
4,646,792	+		GFF4647	0.53	-0.8
4,646,792	+		GFF4647	0.53	+0.9
4,646,792	+		GFF4647	0.53	-0.2
4,646,800	+		GFF4647	0.54	-3.1
4,646,800	-		GFF4647	0.54	-0.1
4,646,800	-		GFF4647	0.54	-0.5
4,646,800	-		GFF4647	0.54	-2.3
4,646,800	-		GFF4647	0.54	+0.2
4,646,800	-		GFF4647	0.54	-0.6
4,646,800	-		GFF4647	0.54	-0.5
4,646,800	-		GFF4647	0.54	-0.8
4,646,805	-		GFF4647	0.55	-2.6
4,646,814	+		GFF4647	0.56	-0.3
4,646,838	+		GFF4647	0.58	-1.4
4,646,842	+		GFF4647	0.58	-0.0
4,646,844	+		GFF4647	0.58	-0.2
4,646,854	+		GFF4647	0.59	-1.7
4,646,854	-		GFF4647	0.59	+0.5
4,646,854	-		GFF4647	0.59	+0.2
4,646,862	-		GFF4647	0.60	+0.6
4,646,923	+		GFF4647	0.66	+0.0
4,646,952	+		GFF4647	0.68	-1.7
4,646,960	-		GFF4647	0.69	-0.7
4,646,965	-		GFF4647	0.69	+0.1
4,646,965	-		GFF4647	0.69	+0.1
4,646,970	-		GFF4647	0.70	+0.8
4,646,972	+		GFF4647	0.70	-1.0
4,646,980	-		GFF4647	0.71	-1.8
4,646,984	+		GFF4647	0.71	-0.2
4,647,018	+		GFF4647	0.74	-1.6
4,647,026	-		GFF4647	0.75	-0.4
4,647,049	-		GFF4647	0.77	-2.3
4,647,067	-		GFF4647	0.79	+0.4
4,647,077	-		GFF4647	0.80	+1.2
4,647,098	-		GFF4647	0.82	-0.9
4,647,098	-		GFF4647	0.82	-0.5
4,647,112	+		GFF4647	0.83	+0.9
4,647,114	+		GFF4647	0.83	-1.0
4,647,114	+		GFF4647	0.83	-0.3
4,647,129	+		GFF4647	0.85	-2.4
4,647,131	+		GFF4647	0.85	-0.5
4,647,131	+		GFF4647	0.85	+1.0
4,647,133	+		GFF4647	0.85	-0.6
4,647,139	-		GFF4647	0.85	-0.9
4,647,141	-		GFF4647	0.86	-0.6
4,647,141	-		GFF4647	0.86	+1.0
4,647,152	+		GFF4647	0.87	-1.6
4,647,152	+		GFF4647	0.87	+0.4
4,647,152	+		GFF4647	0.87	-0.5
4,647,152	+		GFF4647	0.87	-0.4
4,647,152	+		GFF4647	0.87	+0.1
4,647,152	+		GFF4647	0.87	+0.6
4,647,152	+		GFF4647	0.87	-0.7
4,647,152	+		GFF4647	0.87	+0.0
4,647,152	+		GFF4647	0.87	-0.3
4,647,158	+		GFF4647	0.87	-0.0
4,647,160	-		GFF4647	0.87	+0.3
4,647,160	-		GFF4647	0.87	-0.6
4,647,160	-		GFF4647	0.87	+0.2
4,647,160	-		GFF4647	0.87	+0.4
4,647,160	-		GFF4647	0.87	-1.3
4,647,160	-		GFF4647	0.87	-1.6
4,647,160	-		GFF4647	0.87	+0.6
4,647,169	+		GFF4647	0.88	-1.6
4,647,171	-		GFF4647	0.88	+1.3
4,647,177	-		GFF4647	0.89	+0.1
4,647,177	-		GFF4647	0.89	-0.1
4,647,179	+		GFF4647	0.89	-0.9
4,647,185	+		GFF4647	0.90	-1.2
4,647,187	-		GFF4647	0.90	+0.2
4,647,192	+				+0.4
4,647,192	+				-0.3
4,647,192	+				-0.5
4,647,192	+				-0.8
4,647,192	+				-0.0
4,647,192	+				-0.1
4,647,200	-				+0.4
4,647,200	-				+0.0
4,647,200	-				-0.1
4,647,217	+				-0.4
4,647,225	-				-0.5
4,647,251	-				+0.5
4,647,251	-				+0.7
4,647,252	-				+1.0
4,647,252	-				-0.5
4,647,367	-		GFF4648	0.11	-0.1
4,647,374	+		GFF4648	0.13	-0.4
4,647,397	+		GFF4648	0.16	+0.7
4,647,403	-		GFF4648	0.17	+0.0
4,647,412	-		GFF4648	0.18	-0.3
4,647,445	-		GFF4648	0.24	-1.7
4,647,451	-		GFF4648	0.24	-0.4
4,647,453	+		GFF4648	0.25	-1.7
4,647,456	-		GFF4648	0.25	+0.3
4,647,458	+		GFF4648	0.26	+0.2
4,647,458	+		GFF4648	0.26	+0.3
4,647,458	+		GFF4648	0.26	+0.8
4,647,458	+		GFF4648	0.26	-0.2
4,647,466	+		GFF4648	0.27	+0.7
4,647,495	-		GFF4648	0.31	-2.2
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