Strain Fitness in Sphingobium sp. HT1-2 around GFF4642

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,641,718	+		GFF4640	0.77	+0.2
4,641,733	-		GFF4640	0.80	-0.5
4,641,750	+		GFF4640	0.84	-0.5
4,641,750	+		GFF4640	0.84	-1.7
4,641,758	-		GFF4640	0.86	+0.6
4,641,779	+				+0.6
4,641,782	-				-1.6
4,641,784	+				-0.4
4,641,787	-				-0.5
4,641,806	+				+0.9
4,641,808	+				-1.9
4,641,808	+				+0.8
4,641,813	+				+0.2
4,641,814	-				-1.2
4,641,816	-				+0.4
4,641,816	-				+1.5
4,641,818	+				+0.3
4,641,818	+				-0.9
4,641,818	+				+0.5
4,641,818	+				-0.0
4,641,826	-				-0.3
4,641,885	+				-2.1
4,641,885	+				-1.3
4,641,898	+				-0.9
4,641,910	+				+0.7
4,641,911	+				-0.0
4,641,918	-				-0.7
4,641,919	-				-0.3
4,641,923	+				+0.1
4,641,951	-				-0.4
4,641,957	+				-0.4
4,641,965	-				-0.2
4,641,991	+		GFF4641	0.13	-1.4
4,641,991	+		GFF4641	0.13	-0.7
4,641,991	+		GFF4641	0.13	+0.3
4,641,991	+		GFF4641	0.13	-1.8
4,641,991	+		GFF4641	0.13	-0.1
4,641,991	+		GFF4641	0.13	-0.6
4,641,991	+		GFF4641	0.13	-2.2
4,641,991	+		GFF4641	0.13	+1.4
4,641,991	+		GFF4641	0.13	-0.3
4,641,991	+		GFF4641	0.13	-1.5
4,641,991	+		GFF4641	0.13	-0.6
4,641,991	+		GFF4641	0.13	-1.1
4,641,991	+		GFF4641	0.13	+0.5
4,641,991	+		GFF4641	0.13	-0.6
4,641,991	+		GFF4641	0.13	-1.2
4,641,991	+		GFF4641	0.13	-0.5
4,641,991	+		GFF4641	0.13	+0.3
4,641,991	+		GFF4641	0.13	-0.3
4,641,991	+		GFF4641	0.13	-0.3
4,641,991	+		GFF4641	0.13	+0.4
4,641,991	+		GFF4641	0.13	-0.9
4,641,991	+		GFF4641	0.13	-1.9
4,641,993	-		GFF4641	0.13	-2.7
4,641,999	-		GFF4641	0.14	-0.7
4,641,999	-		GFF4641	0.14	-0.2
4,641,999	-		GFF4641	0.14	-0.0
4,641,999	-		GFF4641	0.14	-0.4
4,641,999	-		GFF4641	0.14	-1.2
4,641,999	-		GFF4641	0.14	+1.9
4,641,999	-		GFF4641	0.14	+0.3
4,641,999	-		GFF4641	0.14	-0.6
4,641,999	-		GFF4641	0.14	-0.2
4,641,999	-		GFF4641	0.14	-0.5
4,641,999	-		GFF4641	0.14	-0.4
4,641,999	-		GFF4641	0.14	+0.3
4,642,013	-		GFF4641	0.16	+1.1
4,642,023	+		GFF4641	0.17	-0.4
4,642,026	-		GFF4641	0.17	+0.2
4,642,026	-		GFF4641	0.17	+0.2
4,642,045	+		GFF4641	0.20	+0.2
4,642,048	-		GFF4641	0.20	+0.6
4,642,061	-		GFF4641	0.22	-1.1
4,642,061	-		GFF4641	0.22	-1.7
4,642,099	-		GFF4641	0.27	+0.1
4,642,110	+		GFF4641	0.28	-1.0
4,642,136	-		GFF4641	0.31	+0.5
4,642,141	-		GFF4641	0.32	-1.1
4,642,142	+		GFF4641	0.32	-0.5
4,642,142	+		GFF4641	0.32	-3.1
4,642,150	-		GFF4641	0.33	-2.3
4,642,150	-		GFF4641	0.33	-0.1
4,642,150	-		GFF4641	0.33	-0.3
4,642,150	-		GFF4641	0.33	-1.1
4,642,150	-		GFF4641	0.33	-0.9
4,642,171	-		GFF4641	0.36	+0.8
4,642,171	-		GFF4641	0.36	+0.3
4,642,172	+		GFF4641	0.36	-0.5
4,642,173	+		GFF4641	0.36	-1.9
4,642,173	+		GFF4641	0.36	-0.4
4,642,181	-		GFF4641	0.37	-0.0
4,642,181	-		GFF4641	0.37	-0.7
4,642,181	-		GFF4641	0.37	+0.3
4,642,186	-		GFF4641	0.38	-1.5
4,642,206	-		GFF4641	0.40	+0.5
4,642,206	-		GFF4641	0.40	+0.1
4,642,206	-		GFF4641	0.40	-1.5
4,642,231	+		GFF4641	0.43	+1.4
4,642,240	-		GFF4641	0.45	+0.3
4,642,276	-		GFF4641	0.49	-1.6
4,642,281	+		GFF4641	0.50	-2.9
4,642,281	+		GFF4641	0.50	-0.8
4,642,286	+		GFF4641	0.50	-0.1
4,642,294	-		GFF4641	0.51	-2.0
4,642,294	-		GFF4641	0.51	-0.2
4,642,299	-		GFF4641	0.52	-0.4
4,642,346	-		GFF4641	0.58	-0.5
4,642,346	-		GFF4641	0.58	-1.3
4,642,381	+		GFF4641	0.62	+0.7
4,642,381	+		GFF4641	0.62	-2.3
4,642,381	+		GFF4641	0.62	+0.1
4,642,382	-		GFF4641	0.63	+0.6
4,642,400	+		GFF4641	0.65	+1.2
4,642,458	+		GFF4641	0.72	+0.0
4,642,458	+		GFF4641	0.72	+0.5
4,642,458	+		GFF4641	0.72	-0.7
4,642,458	+		GFF4641	0.72	-0.9
4,642,463	+		GFF4641	0.73	-1.4
4,642,463	+		GFF4641	0.73	+0.6
4,642,463	+		GFF4641	0.73	+0.1
4,642,463	+		GFF4641	0.73	+0.0
4,642,463	+		GFF4641	0.73	+0.1
4,642,463	+		GFF4641	0.73	+0.2
4,642,463	+		GFF4641	0.73	+0.5
4,642,463	+		GFF4641	0.73	-1.8
4,642,463	+		GFF4641	0.73	-0.6
4,642,463	+		GFF4641	0.73	+0.4
4,642,463	+		GFF4641	0.73	-0.3
4,642,463	+		GFF4641	0.73	-0.7
4,642,463	+		GFF4641	0.73	-0.6
4,642,466	-		GFF4641	0.73	+1.2
4,642,468	+		GFF4641	0.74	-2.1
4,642,468	+		GFF4641	0.74	-2.0
4,642,471	-		GFF4641	0.74	-2.2
4,642,471	-		GFF4641	0.74	-1.6
4,642,471	-		GFF4641	0.74	-1.3
4,642,471	-		GFF4641	0.74	-0.9
4,642,471	-		GFF4641	0.74	+0.7
4,642,471	-		GFF4641	0.74	+0.1
4,642,471	-		GFF4641	0.74	-1.9
4,642,476	-		GFF4641	0.75	+0.3
4,642,478	+		GFF4641	0.75	+0.3
4,642,499	+		GFF4641	0.77	-1.6
4,642,499	+		GFF4641	0.77	+0.8
4,642,499	+		GFF4641	0.77	+0.6
4,642,499	+		GFF4641	0.77	-1.5
4,642,499	+		GFF4641	0.77	-1.9
4,642,499	+		GFF4641	0.77	-1.7
4,642,507	-		GFF4641	0.78	-0.3
4,642,507	-		GFF4641	0.78	+0.1
4,642,507	-		GFF4641	0.78	-1.1
4,642,507	-		GFF4641	0.78	+0.2
4,642,507	-		GFF4641	0.78	-0.8
4,642,509	+		GFF4641	0.79	-1.4
4,642,509	+		GFF4641	0.79	-0.7
4,642,509	+		GFF4641	0.79	-0.9
4,642,509	+		GFF4641	0.79	+1.1
4,642,509	+		GFF4641	0.79	-1.9
4,642,514	+		GFF4641	0.79	-1.1
4,642,524	-		GFF4641	0.81	-1.0
4,642,534	-		GFF4641	0.82	+0.1
4,642,537	-		GFF4641	0.82	-0.5
4,642,554	+		GFF4641	0.84	-0.9
4,642,556	+		GFF4641	0.85	+1.1
4,642,569	+		GFF4641	0.86	-0.6
4,642,572	+		GFF4641	0.87	-1.1
4,642,572	+		GFF4641	0.87	-1.5
4,642,591	+		GFF4641	0.89	+0.2
4,642,683	-				-0.3
4,642,688	+				-0.8
4,642,688	-				+0.3
4,642,705	+				-0.4
4,642,705	+				-0.5
4,642,705	+				-0.9
4,642,705	+				-1.2
4,642,705	+				-0.2
4,642,705	+				-0.9
4,642,705	+				-0.6
4,642,705	+				-1.7
4,642,705	+				+1.6
4,642,711	-				-0.1
4,642,711	-				-1.2
4,642,711	-				+1.8
4,642,711	-				-0.4
4,642,713	-				+0.6
4,642,713	-				+0.4
4,642,740	+				+0.1
4,642,780	+		GFF4642	0.19	+0.9
4,642,780	+		GFF4642	0.19	+0.8
4,642,780	+		GFF4642	0.19	+1.1
4,642,780	+		GFF4642	0.19	-0.3
4,642,780	+		GFF4642	0.19	+0.1
4,642,780	+		GFF4642	0.19	-0.8
4,642,781	-		GFF4642	0.19	-0.3
4,642,788	-		GFF4642	0.21	-0.7
4,642,793	-		GFF4642	0.22	+0.2
4,642,827	+		GFF4642	0.31	-0.4
4,642,850	+		GFF4642	0.36	+0.2
4,642,850	+		GFF4642	0.36	+0.7
4,642,863	-		GFF4642	0.40	-0.2
4,642,865	+		GFF4642	0.40	-1.8
4,642,865	+		GFF4642	0.40	-0.2
4,642,865	+		GFF4642	0.40	-1.5
4,642,865	+		GFF4642	0.40	-0.2
4,642,865	+		GFF4642	0.40	-0.6
4,642,865	+		GFF4642	0.40	+1.4
4,642,865	+		GFF4642	0.40	-1.1
4,642,865	+		GFF4642	0.40	+0.9
4,642,865	+		GFF4642	0.40	-0.4
4,642,865	+		GFF4642	0.40	-0.1
4,642,870	+		GFF4642	0.41	-0.5
4,642,870	+		GFF4642	0.41	+0.6
4,642,870	+		GFF4642	0.41	+0.2
4,642,870	+		GFF4642	0.41	-1.6
4,642,871	-		GFF4642	0.42	-0.3
4,642,873	-		GFF4642	0.42	-0.4
4,642,873	-		GFF4642	0.42	-0.8
4,642,873	-		GFF4642	0.42	+0.2
4,642,873	-		GFF4642	0.42	-0.7
4,642,891	+		GFF4642	0.47	+0.6
4,642,897	-		GFF4642	0.48	+0.2
4,642,899	+		GFF4642	0.49	-1.2
4,642,908	+		GFF4642	0.51	-2.3
4,642,908	+		GFF4642	0.51	+0.4
4,642,908	+		GFF4642	0.51	+1.3
4,642,916	-		GFF4642	0.53	-0.2
4,642,916	-		GFF4642	0.53	-1.4
4,642,916	-		GFF4642	0.53	-0.3
4,642,917	-		GFF4642	0.53	-0.5
4,642,918	+		GFF4642	0.54	-0.2
4,642,976	+		GFF4642	0.68	-0.7
4,642,986	+		GFF4642	0.71	+0.9
4,642,986	+		GFF4642	0.71	-0.4
4,642,989	-		GFF4642	0.72	-0.8
4,643,025	-		GFF4642	0.81	-0.6
4,643,029	+		GFF4642	0.82	+0.0
4,643,036	+		GFF4642	0.84	-0.7
4,643,049	+		GFF4642	0.87	+0.0
4,643,058	-		GFF4642	0.89	-2.1
4,643,069	+				+0.7
4,643,092	+				-1.6
4,643,092	+				-0.3
4,643,101	+				+0.3
4,643,101	+				+1.7
4,643,109	-				-0.4
4,643,118	+				-0.3
4,643,130	-				-1.6
4,643,138	-				-1.2
4,643,150	+				-0.4
4,643,158	-				+1.4
4,643,161	+				-0.3
4,643,173	-				-0.3
4,643,173	-				-0.9
4,643,173	-				-0.4
4,643,186	+				-0.7
4,643,194	-				+0.7
4,643,194	-				-2.0
4,643,196	-				-0.9
4,643,215	-				-1.1
4,643,216	+				-0.5
4,643,224	-				-0.4
4,643,260	+				-0.9
4,643,260	+				+0.7
4,643,260	+				-1.5
4,643,260	+				-0.5
4,643,260	+				-0.4
4,643,260	+				+0.6
4,643,260	+				+0.5
4,643,268	-				+0.1
4,643,268	-				+0.1
4,643,268	-				-0.4
4,643,270	+				+0.2
4,643,270	+				-0.4
4,643,270	+				-0.9
4,643,278	-		GFF4643	0.10	+0.5
4,643,278	-		GFF4643	0.10	-0.4
4,643,278	-		GFF4643	0.10	+1.3
4,643,289	-		GFF4643	0.11	-2.7
4,643,320	+		GFF4643	0.15	+1.7
4,643,321	-		GFF4643	0.15	-0.4
4,643,321	-		GFF4643	0.15	-0.5
4,643,321	-		GFF4643	0.15	-0.2
4,643,359	-		GFF4643	0.19	-0.4
4,643,405	+		GFF4643	0.24	-0.9
4,643,405	+		GFF4643	0.24	-0.4
4,643,413	-		GFF4643	0.25	-0.5
4,643,413	-		GFF4643	0.25	-1.7
4,643,418	+		GFF4643	0.26	+0.1
4,643,431	-		GFF4643	0.27	+0.8
4,643,438	+		GFF4643	0.28	+0.8
4,643,438	+		GFF4643	0.28	+0.5
4,643,443	+		GFF4643	0.28	+0.7
4,643,443	+		GFF4643	0.28	+0.3
4,643,446	-		GFF4643	0.29	+0.2
4,643,451	-		GFF4643	0.29	+0.9
4,643,451	-		GFF4643	0.29	+0.1
4,643,480	+		GFF4643	0.32	-0.1
4,643,502	+		GFF4643	0.35	-0.3
4,643,503	-		GFF4643	0.35	-0.4
4,643,531	-		GFF4643	0.38	-0.5
4,643,533	+		GFF4643	0.38	-0.1
4,643,545	+		GFF4643	0.39	+0.1
4,643,546	+		GFF4643	0.40	+0.2
4,643,551	-		GFF4643	0.40	-1.4
4,643,559	+		GFF4643	0.41	-0.4
4,643,626	-		GFF4643	0.48	-1.3
4,643,642	+		GFF4643	0.50	+0.3
4,643,642	+		GFF4643	0.50	-0.3
4,643,642	+		GFF4643	0.50	-0.8
4,643,642	+		GFF4643	0.50	-0.7
4,643,647	+		GFF4643	0.51	-0.1
4,643,650	-		GFF4643	0.51	+0.5
4,643,650	-		GFF4643	0.51	-0.0
4,643,650	-		GFF4643	0.51	-0.5
4,643,650	-		GFF4643	0.51	-0.8
4,643,650	-		GFF4643	0.51	-0.5
4,643,667	+		GFF4643	0.53	+1.1
4,643,748	+		GFF4643	0.62	+0.6
4,643,752	+		GFF4643	0.62	-1.7
4,643,754	-		GFF4643	0.62	+1.8
4,643,764	+		GFF4643	0.64	+0.1
4,643,774	+		GFF4643	0.65	-1.2
4,643,782	-		GFF4643	0.66	-0.9
4,643,814	+		GFF4643	0.69	-0.4
4,643,823	-		GFF4643	0.70	-1.1
4,643,845	-		GFF4643	0.72	+0.8
4,643,845	-		GFF4643	0.72	+0.6
4,643,847	-		GFF4643	0.73	+0.6
4,643,880	+		GFF4643	0.76	-0.8
4,643,893	+		GFF4643	0.78	-1.8
4,643,895	+		GFF4643	0.78	+0.8
4,643,901	-		GFF4643	0.79	-0.5
4,643,901	-		GFF4643	0.79	+0.5
4,643,901	-		GFF4643	0.79	-1.0
4,643,901	-		GFF4643	0.79	-0.6
4,643,903	-		GFF4643	0.79	-0.4
4,643,903	-		GFF4643	0.79	+1.2
4,643,903	-		GFF4643	0.79	-0.4
4,643,924	+		GFF4643	0.81	-0.3
4,643,967	+		GFF4643	0.86	-0.5
4,643,972	+		GFF4643	0.86	+0.3
4,643,972	+		GFF4643	0.86	-2.0
4,643,975	-		GFF4643	0.87	-0.8
4,643,975	-		GFF4643	0.87	+2.4
4,643,980	-		GFF4643	0.87	+0.3
4,643,986	+		GFF4643	0.88	-1.3
4,643,994	-		GFF4643	0.89	+1.7
4,643,994	-		GFF4643	0.89	+0.1
4,644,011	+				-0.0
4,644,024	-				-0.8
4,644,024	-				+1.9
4,644,031	+				-0.1
4,644,031	+				-1.3
4,644,032	+				-1.4
4,644,048	+				-0.5
4,644,056	+				+0.2
4,644,075	+				-0.7
4,644,083	-				-1.7
4,644,083	-				+0.5
4,644,085	+				+0.1
4,644,085	+				+0.5
4,644,085	+				-1.1
4,644,085	+				-0.4
4,644,085	+				+0.6
4,644,093	-				-0.1
4,644,093	-				+1.2
4,644,093	-				-2.2
4,644,093	-				+1.2
4,644,093	-				+0.6
4,644,093	-				-1.0
4,644,093	-				-1.0
4,644,095	+				-1.9