Strain Fitness in Sphingobium sp. HT1-2 around GFF4638

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,637,071	+		GFF4637	0.36	+1.8
4,637,078	+		GFF4637	0.37	-1.5
4,637,078	+		GFF4637	0.37	-0.5
4,637,078	+		GFF4637	0.37	+1.0
4,637,078	+		GFF4637	0.37	-0.2
4,637,078	+		GFF4637	0.37	+1.1
4,637,078	+		GFF4637	0.37	+0.3
4,637,078	+		GFF4637	0.37	+0.5
4,637,079	-		GFF4637	0.37	-0.8
4,637,086	-		GFF4637	0.37	-0.4
4,637,086	-		GFF4637	0.37	+0.4
4,637,086	-		GFF4637	0.37	-2.8
4,637,086	-		GFF4637	0.37	+0.1
4,637,086	-		GFF4637	0.37	-1.1
4,637,086	-		GFF4637	0.37	+0.4
4,637,086	-		GFF4637	0.37	+0.0
4,637,087	-		GFF4637	0.38	+0.1
4,637,121	-		GFF4637	0.40	-1.5
4,637,128	+		GFF4637	0.41	-1.1
4,637,128	+		GFF4637	0.41	-0.4
4,637,137	+		GFF4637	0.41	-0.1
4,637,146	-		GFF4637	0.42	+0.1
4,637,146	-		GFF4637	0.42	-2.3
4,637,150	-		GFF4637	0.42	-2.1
4,637,160	-		GFF4637	0.43	+0.1
4,637,162	+		GFF4637	0.43	-1.8
4,637,195	-		GFF4637	0.46	+1.2
4,637,203	-		GFF4637	0.46	-1.0
4,637,213	+		GFF4637	0.47	-1.1
4,637,213	-		GFF4637	0.47	+0.9
4,637,217	+		GFF4637	0.47	+0.2
4,637,217	+		GFF4637	0.47	-0.9
4,637,217	+		GFF4637	0.47	+0.9
4,637,217	+		GFF4637	0.47	-0.0
4,637,225	-		GFF4637	0.48	-2.1
4,637,225	-		GFF4637	0.48	+0.6
4,637,264	+		GFF4637	0.51	+0.5
4,637,269	+		GFF4637	0.51	-1.2
4,637,269	+		GFF4637	0.51	-1.4
4,637,277	-		GFF4637	0.52	-1.9
4,637,277	-		GFF4637	0.52	-0.4
4,637,315	-		GFF4637	0.55	+0.4
4,637,320	-		GFF4637	0.55	+1.9
4,637,325	+		GFF4637	0.55	-0.5
4,637,341	+		GFF4637	0.57	+0.2
4,637,346	+		GFF4637	0.57	+0.6
4,637,346	+		GFF4637	0.57	+1.2
4,637,354	-		GFF4637	0.58	-3.4
4,637,354	-		GFF4637	0.58	+1.1
4,637,354	-		GFF4637	0.58	-0.7
4,637,379	+		GFF4637	0.59	-1.4
4,637,398	-		GFF4637	0.61	-0.9
4,637,400	+		GFF4637	0.61	+1.5
4,637,402	+		GFF4637	0.61	+0.2
4,637,412	+		GFF4637	0.62	-0.1
4,637,419	+		GFF4637	0.62	-0.9
4,637,419	+		GFF4637	0.62	-1.0
4,637,419	+		GFF4637	0.62	-0.4
4,637,468	+		GFF4637	0.66	-0.3
4,637,476	-		GFF4637	0.67	-3.0
4,637,510	-		GFF4637	0.69	-1.4
4,637,533	+		GFF4637	0.71	+0.1
4,637,547	+		GFF4637	0.72	-0.2
4,637,567	-		GFF4637	0.73	+0.1
4,637,572	+		GFF4637	0.74	+0.1
4,637,606	-		GFF4637	0.76	-0.2
4,637,616	+		GFF4637	0.77	-2.2
4,637,643	-		GFF4637	0.79	-0.2
4,637,696	+		GFF4637	0.83	+0.8
4,637,696	+		GFF4637	0.83	+0.6
4,637,696	+		GFF4637	0.83	-3.1
4,637,697	-		GFF4637	0.83	-0.1
4,637,697	-		GFF4637	0.83	-1.2
4,637,704	-		GFF4637	0.84	-0.4
4,637,704	-		GFF4637	0.84	-0.3
4,637,704	-		GFF4637	0.84	-0.6
4,637,719	+		GFF4637	0.85	+0.0
4,637,719	+		GFF4637	0.85	-1.2
4,637,724	+		GFF4637	0.85	-0.1
4,637,724	+		GFF4637	0.85	+0.8
4,637,731	+		GFF4637	0.86	-0.1
4,637,731	+		GFF4637	0.86	+0.1
4,637,731	+		GFF4637	0.86	-0.0
4,637,731	+		GFF4637	0.86	-0.2
4,637,731	+		GFF4637	0.86	-0.4
4,637,732	-		GFF4637	0.86	+0.3
4,637,732	-		GFF4637	0.86	+0.9
4,637,739	-		GFF4637	0.86	-0.5
4,637,739	-		GFF4637	0.86	-0.6
4,637,744	+		GFF4637	0.87	-0.5
4,637,752	-		GFF4637	0.87	-1.2
4,637,752	-		GFF4637	0.87	+0.5
4,637,757	-		GFF4637	0.88	-2.0
4,637,768	-		GFF4637	0.89	-0.9
4,637,768	-		GFF4637	0.89	-1.6
4,637,768	-		GFF4637	0.89	-0.1
4,637,768	-		GFF4637	0.89	-1.2
4,637,788	-				+0.4
4,637,788	-				-1.1
4,637,801	+				-1.8
4,637,811	+				-1.0
4,637,816	+				-0.4
4,637,823	+				+0.1
4,637,824	-				+0.5
4,637,824	-				-0.1
4,637,826	+				-1.4
4,637,834	-				-0.8
4,637,834	-				-1.4
4,637,854	+				-0.8
4,637,864	+				-1.8
4,637,879	-				-1.8
4,637,900	-				-0.6
4,637,900	-				+0.1
4,637,927	+				-0.6
4,637,927	+				-1.3
4,637,927	+				+0.5
4,637,932	+				-0.2
4,637,935	-				-0.9
4,637,939	+				-1.5
4,637,952	+				-1.5
4,637,954	-				-1.8
4,637,954	-				+0.6
4,637,969	+				+0.4
4,637,978	-				-0.9
4,637,991	+				+1.3
4,637,991	+				-0.6
4,637,999	-				-0.1
4,638,005	-				-1.4
4,638,005	-				-0.7
4,638,020	+				-0.3
4,638,020	+				-1.3
4,638,028	-				-0.3
4,638,029	-				-2.0
4,638,053	+				+0.8
4,638,053	+				-0.6
4,638,053	+				+0.4
4,638,054	-				-2.2
4,638,069	+				-0.3
4,638,080	+				+0.2
4,638,080	+				-1.0
4,638,080	+				-0.1
4,638,082	-				-0.6
4,638,082	-				+1.2
4,638,082	-				-0.6
4,638,082	-				-3.0
4,638,082	-				-0.4
4,638,088	-				-0.3
4,638,088	-				-1.2
4,638,120	+				-0.4
4,638,120	+				+0.7
4,638,120	+				-1.6
4,638,120	+				-0.3
4,638,120	+				+0.7
4,638,120	+				+0.7
4,638,120	+				+0.4
4,638,120	+				-0.5
4,638,120	+				-0.7
4,638,120	+				-0.0
4,638,120	+				-1.7
4,638,120	+				-0.9
4,638,120	+				-0.6
4,638,120	+				+0.3
4,638,120	+				+0.6
4,638,120	+				-0.3
4,638,120	+				-0.4
4,638,120	+				+0.0
4,638,120	+				+0.1
4,638,120	+				+0.9
4,638,120	+				-3.3
4,638,120	+				-2.0
4,638,120	+				-1.8
4,638,120	+				-1.1
4,638,120	+				+1.2
4,638,120	+				+0.2
4,638,120	+				-1.7
4,638,120	+				-1.7
4,638,120	+				+0.6
4,638,120	+				-0.7
4,638,120	+				+1.1
4,638,120	+				-0.2
4,638,120	+				-0.0
4,638,120	+				-0.5
4,638,120	+				-0.4
4,638,120	+				+0.1
4,638,120	+				-1.1
4,638,120	+				-0.2
4,638,120	+				+0.2
4,638,120	+				-2.3
4,638,120	-				-0.9
4,638,120	-				+0.8
4,638,124	+				+0.1
4,638,127	+				-1.9
4,638,128	-				-0.7
4,638,128	-				-0.1
4,638,128	-				+0.1
4,638,128	-				-0.0
4,638,128	-				+0.8
4,638,128	-				-0.7
4,638,128	-				-0.6
4,638,128	-				-0.5
4,638,128	-				-2.6
4,638,128	-				+0.2
4,638,128	-				-0.9
4,638,128	-				-0.6
4,638,128	-				+0.2
4,638,128	-				+0.4
4,638,128	-				-0.7
4,638,128	-				+1.4
4,638,128	-				+0.1
4,638,128	-				-0.7
4,638,128	-				-1.2
4,638,128	-				+0.3
4,638,128	-				-0.7
4,638,128	-				-1.7
4,638,128	-				-0.0
4,638,128	-				-1.3
4,638,128	-				-1.0
4,638,128	-				-0.4
4,638,128	-				-2.2
4,638,128	-				-0.7
4,638,128	-				-2.3
4,638,128	-				-0.1
4,638,128	-				-0.6
4,638,128	-				+0.0
4,638,128	-				+0.6
4,638,128	-				-0.5
4,638,128	-				-0.1
4,638,128	-				-0.4
4,638,128	-				-2.2
4,638,128	-				+1.0
4,638,128	-				-0.4
4,638,128	-				-0.4
4,638,128	-				-1.7
4,638,128	-				+0.8
4,638,130	+				+1.3
4,638,132	+				-0.0
4,638,140	-				-0.5
4,638,140	-				-0.6
4,638,157	-				-0.2
4,638,161	-				+0.3
4,638,171	-				-0.7
4,638,188	-				+1.2
4,638,211	-		GFF4638	0.11	-0.2
4,638,239	+		GFF4638	0.13	-1.7
4,638,243	-		GFF4638	0.13	-1.2
4,638,376	-		GFF4638	0.22	-0.5
4,638,390	+		GFF4638	0.23	-0.8
4,638,406	+		GFF4638	0.24	-1.0
4,638,414	+		GFF4638	0.24	-0.4
4,638,414	+		GFF4638	0.24	-1.4
4,638,422	-		GFF4638	0.25	+0.8
4,638,437	+		GFF4638	0.26	+0.4
4,638,437	+		GFF4638	0.26	+0.3
4,638,445	+		GFF4638	0.26	-0.7
4,638,445	+		GFF4638	0.26	-0.4
4,638,445	+		GFF4638	0.26	+0.1
4,638,445	+		GFF4638	0.26	-0.8
4,638,445	+		GFF4638	0.26	-0.3
4,638,445	+		GFF4638	0.26	-2.1
4,638,445	-		GFF4638	0.26	-0.6
4,638,448	-		GFF4638	0.27	-1.5
4,638,453	-		GFF4638	0.27	-0.5
4,638,453	-		GFF4638	0.27	+1.8
4,638,453	-		GFF4638	0.27	-0.1
4,638,465	-		GFF4638	0.28	-2.5
4,638,469	+		GFF4638	0.28	+1.2
4,638,471	+		GFF4638	0.28	-1.9
4,638,476	+		GFF4638	0.28	-0.6
4,638,477	-		GFF4638	0.28	+1.0
4,638,477	-		GFF4638	0.28	-0.5
4,638,477	-		GFF4638	0.28	-0.4
4,638,477	-		GFF4638	0.28	-0.3
4,638,479	-		GFF4638	0.29	-0.0
4,638,479	-		GFF4638	0.29	+0.2
4,638,492	-		GFF4638	0.29	-0.4
4,638,509	-		GFF4638	0.31	+0.4
4,638,511	+		GFF4638	0.31	-1.6
4,638,511	+		GFF4638	0.31	+1.1
4,638,511	+		GFF4638	0.31	+1.1
4,638,519	-		GFF4638	0.31	+1.1
4,638,519	-		GFF4638	0.31	-2.1
4,638,527	-		GFF4638	0.32	-0.3
4,638,570	+		GFF4638	0.35	-0.6
4,638,570	+		GFF4638	0.35	+0.3
4,638,570	+		GFF4638	0.35	-0.4
4,638,570	+		GFF4638	0.35	-0.4
4,638,578	-		GFF4638	0.35	+0.1
4,638,578	-		GFF4638	0.35	-0.4
4,638,578	-		GFF4638	0.35	-1.3
4,638,590	-		GFF4638	0.36	-2.0
4,638,613	+		GFF4638	0.38	+0.5
4,638,621	-		GFF4638	0.38	+0.2
4,638,646	+		GFF4638	0.40	-2.8
4,638,648	-		GFF4638	0.40	-2.0
4,638,663	+		GFF4638	0.41	+0.6
4,638,671	+		GFF4638	0.41	+0.2
4,638,671	-		GFF4638	0.41	-1.0
4,638,690	+		GFF4638	0.43	-1.0
4,638,705	+		GFF4638	0.44	+0.2
4,638,713	-		GFF4638	0.44	-0.5
4,638,713	-		GFF4638	0.44	+0.9
4,638,713	-		GFF4638	0.44	-2.4
4,638,725	+		GFF4638	0.45	-0.3
4,638,726	+		GFF4638	0.45	-0.1
4,638,726	+		GFF4638	0.45	-1.5
4,638,733	-		GFF4638	0.46	-0.3
4,638,742	+		GFF4638	0.46	+1.5
4,638,743	-		GFF4638	0.46	-1.5
4,638,750	-		GFF4638	0.47	-0.5
4,638,750	-		GFF4638	0.47	+0.3
4,638,755	+		GFF4638	0.47	-0.1
4,638,756	+		GFF4638	0.47	+0.9
4,638,766	+		GFF4638	0.48	-1.4
4,638,769	-		GFF4638	0.48	+0.1
4,638,769	-		GFF4638	0.48	+1.4
4,638,807	+		GFF4638	0.50	-1.3
4,638,807	+		GFF4638	0.50	-0.5
4,638,807	+		GFF4638	0.50	+0.3
4,638,807	+		GFF4638	0.50	+0.1
4,638,807	+		GFF4638	0.50	-0.1
4,638,807	+		GFF4638	0.50	-1.6
4,638,815	-		GFF4638	0.51	+0.5
4,638,845	+		GFF4638	0.53	-0.7
4,638,845	+		GFF4638	0.53	-2.1
4,638,851	+		GFF4638	0.53	+0.7
4,638,853	+		GFF4638	0.54	-0.5
4,638,853	-		GFF4638	0.54	-0.7
4,638,884	+		GFF4638	0.56	-0.4
4,638,919	+		GFF4638	0.58	-0.7
4,638,931	+		GFF4638	0.59	-2.1
4,638,948	+		GFF4638	0.60	-0.2
4,638,948	+		GFF4638	0.60	+0.5
4,638,956	-		GFF4638	0.60	-2.1
4,638,958	-		GFF4638	0.61	+0.1
4,639,001	+		GFF4638	0.63	+0.8
4,639,001	+		GFF4638	0.63	+0.5
4,639,001	+		GFF4638	0.63	-0.0
4,639,001	+		GFF4638	0.63	+0.7
4,639,006	+		GFF4638	0.64	+0.2
4,639,009	-		GFF4638	0.64	+0.7
4,639,009	-		GFF4638	0.64	-0.3
4,639,014	-		GFF4638	0.64	-2.3
4,639,036	+		GFF4638	0.66	-0.5
4,639,036	-		GFF4638	0.66	-1.6
4,639,037	+		GFF4638	0.66	+0.5
4,639,079	+		GFF4638	0.69	+0.3
4,639,081	-		GFF4638	0.69	-0.9
4,639,115	-		GFF4638	0.71	-0.2
4,639,160	+		GFF4638	0.74	-0.3
4,639,160	+		GFF4638	0.74	-0.4
4,639,160	+		GFF4638	0.74	+1.2
4,639,160	+		GFF4638	0.74	-1.5
4,639,168	-		GFF4638	0.75	-0.0
4,639,173	-		GFF4638	0.75	-0.3
4,639,173	-		GFF4638	0.75	-0.4
4,639,185	-		GFF4638	0.76	-0.6
4,639,188	+		GFF4638	0.76	-0.5
4,639,198	+		GFF4638	0.77	+0.2
4,639,198	-		GFF4638	0.77	-2.3
4,639,228	+		GFF4638	0.79	-0.7
4,639,228	+		GFF4638	0.79	+0.2
4,639,228	+		GFF4638	0.79	-1.6
4,639,228	+		GFF4638	0.79	-0.0
4,639,229	+		GFF4638	0.79	+0.7
4,639,236	-		GFF4638	0.79	-0.8
4,639,236	-		GFF4638	0.79	-1.3
4,639,236	-		GFF4638	0.79	+0.2
4,639,236	-		GFF4638	0.79	-1.4
4,639,236	-		GFF4638	0.79	-2.7
4,639,236	-		GFF4638	0.79	-0.6
4,639,236	-		GFF4638	0.79	-0.9
4,639,236	-		GFF4638	0.79	-0.9
4,639,238	+		GFF4638	0.79	-0.1
4,639,251	-		GFF4638	0.80	-0.7
4,639,251	-		GFF4638	0.80	+0.5
4,639,253	-		GFF4638	0.80	-0.2
4,639,263	+		GFF4638	0.81	+0.2
4,639,271	-		GFF4638	0.81	-0.9
4,639,308	+		GFF4638	0.84	-1.3
4,639,308	+		GFF4638	0.84	+0.4
4,639,308	+		GFF4638	0.84	-0.9
4,639,308	+		GFF4638	0.84	-1.6
4,639,308	+		GFF4638	0.84	-1.6
4,639,308	+		GFF4638	0.84	-2.4
4,639,316	-		GFF4638	0.84	-1.4
4,639,316	-		GFF4638	0.84	-0.7
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