Strain Fitness in Sphingobium sp. HT1-2 around GFF4635

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,633,552	+		GFF4634	0.16	+0.3
4,633,556	+		GFF4634	0.16	+0.6
4,633,576	+		GFF4634	0.18	+1.3
4,633,579	+		GFF4634	0.18	-0.7
4,633,581	+		GFF4634	0.18	-0.7
4,633,581	+		GFF4634	0.18	+0.2
4,633,581	+		GFF4634	0.18	-0.1
4,633,581	+		GFF4634	0.18	-2.8
4,633,581	+		GFF4634	0.18	+1.2
4,633,581	+		GFF4634	0.18	-1.0
4,633,581	+		GFF4634	0.18	-1.5
4,633,584	-		GFF4634	0.19	-0.4
4,633,584	-		GFF4634	0.19	-1.0
4,633,584	-		GFF4634	0.19	+0.0
4,633,586	+		GFF4634	0.19	-1.0
4,633,589	-		GFF4634	0.19	-2.4
4,633,589	-		GFF4634	0.19	-0.6
4,633,589	-		GFF4634	0.19	-1.5
4,633,589	-		GFF4634	0.19	+0.8
4,633,607	+		GFF4634	0.21	-0.6
4,633,665	+		GFF4634	0.26	-0.5
4,633,669	+		GFF4634	0.26	-1.6
4,633,671	+		GFF4634	0.26	+1.1
4,633,673	-		GFF4634	0.26	-2.4
4,633,678	-		GFF4634	0.27	-3.0
4,633,688	+		GFF4634	0.28	-1.0
4,633,690	+		GFF4634	0.28	-1.5
4,633,690	+		GFF4634	0.28	-1.6
4,633,717	-		GFF4634	0.30	-0.9
4,633,720	+		GFF4634	0.30	-2.2
4,633,741	+		GFF4634	0.32	+0.0
4,633,745	+		GFF4634	0.32	-1.3
4,633,749	-		GFF4634	0.33	-1.0
4,633,796	+		GFF4634	0.37	+0.5
4,633,814	-		GFF4634	0.38	+0.2
4,633,815	+		GFF4634	0.38	+0.2
4,633,815	+		GFF4634	0.38	-0.3
4,633,815	+		GFF4634	0.38	-1.2
4,633,815	+		GFF4634	0.38	-0.1
4,633,823	-		GFF4634	0.39	+1.6
4,633,823	-		GFF4634	0.39	-0.4
4,633,823	-		GFF4634	0.39	+0.3
4,633,823	-		GFF4634	0.39	-0.4
4,633,838	-		GFF4634	0.40	-0.1
4,633,860	-		GFF4634	0.42	-1.8
4,633,860	-		GFF4634	0.42	+0.2
4,633,860	-		GFF4634	0.42	-1.4
4,633,865	+		GFF4634	0.43	-1.9
4,633,879	+		GFF4634	0.44	-2.6
4,633,881	+		GFF4634	0.44	+0.8
4,633,881	+		GFF4634	0.44	-0.5
4,633,928	-		GFF4634	0.48	+0.2
4,633,930	+		GFF4634	0.48	-0.5
4,633,930	+		GFF4634	0.48	-0.2
4,633,952	+		GFF4634	0.50	-0.4
4,633,955	-		GFF4634	0.50	-2.0
4,633,955	-		GFF4634	0.50	+1.5
4,633,981	+		GFF4634	0.53	+1.0
4,633,986	+		GFF4634	0.53	-0.5
4,633,986	+		GFF4634	0.53	-0.2
4,634,018	+		GFF4634	0.56	-0.2
4,634,018	+		GFF4634	0.56	-0.5
4,634,018	+		GFF4634	0.56	-0.7
4,634,018	+		GFF4634	0.56	-1.9
4,634,026	-		GFF4634	0.56	-2.4
4,634,026	-		GFF4634	0.56	-1.1
4,634,026	-		GFF4634	0.56	-1.1
4,634,026	-		GFF4634	0.56	-0.1
4,634,026	-		GFF4634	0.56	+0.5
4,634,026	-		GFF4634	0.56	-0.2
4,634,045	-		GFF4634	0.58	-1.4
4,634,045	-		GFF4634	0.58	+1.4
4,634,067	-		GFF4634	0.60	-2.2
4,634,077	-		GFF4634	0.61	+0.3
4,634,081	+		GFF4634	0.61	-1.5
4,634,092	+		GFF4634	0.62	-0.3
4,634,094	+		GFF4634	0.62	+0.5
4,634,105	+		GFF4634	0.63	+0.2
4,634,138	+		GFF4634	0.66	-0.0
4,634,140	-		GFF4634	0.66	-1.5
4,634,140	-		GFF4634	0.66	+0.4
4,634,140	-		GFF4634	0.66	-0.3
4,634,148	+		GFF4634	0.67	+0.2
4,634,151	+		GFF4634	0.67	+1.6
4,634,153	-		GFF4634	0.67	-2.3
4,634,156	-		GFF4634	0.68	-2.7
4,634,194	+		GFF4634	0.71	-2.0
4,634,195	-		GFF4634	0.71	-0.7
4,634,202	-		GFF4634	0.72	-2.7
4,634,202	-		GFF4634	0.72	+0.4
4,634,202	-		GFF4634	0.72	-0.6
4,634,204	+		GFF4634	0.72	-1.3
4,634,205	+		GFF4634	0.72	-1.2
4,634,207	+		GFF4634	0.72	-1.1
4,634,212	-		GFF4634	0.72	+0.3
4,634,212	-		GFF4634	0.72	+0.1
4,634,212	-		GFF4634	0.72	-0.9
4,634,212	-		GFF4634	0.72	-2.0
4,634,212	-		GFF4634	0.72	-0.5
4,634,212	-		GFF4634	0.72	-1.8
4,634,222	+		GFF4634	0.73	-0.0
4,634,230	+		GFF4634	0.74	+0.5
4,634,238	-		GFF4634	0.75	-1.0
4,634,240	+		GFF4634	0.75	-1.1
4,634,248	-		GFF4634	0.75	-0.6
4,634,248	-		GFF4634	0.75	-2.3
4,634,250	+		GFF4634	0.76	-0.1
4,634,282	+		GFF4634	0.78	+0.1
4,634,299	+		GFF4634	0.80	-0.5
4,634,299	+		GFF4634	0.80	-0.3
4,634,309	+		GFF4634	0.81	+0.5
4,634,327	+		GFF4634	0.82	+0.6
4,634,362	+		GFF4634	0.85	+0.3
4,634,362	+		GFF4634	0.85	+0.8
4,634,370	-		GFF4634	0.86	-0.8
4,634,370	-		GFF4634	0.86	-1.8
4,634,370	-		GFF4634	0.86	-1.0
4,634,370	-		GFF4634	0.86	-0.5
4,634,391	+		GFF4634	0.88	-0.2
4,634,391	+		GFF4634	0.88	-0.6
4,634,399	-		GFF4634	0.88	+0.7
4,634,430	+				-0.7
4,634,456	+				+0.1
4,634,459	-				-1.5
4,634,475	+				+0.0
4,634,490	+				-1.0
4,634,490	+				-0.2
4,634,490	+				-0.5
4,634,490	+				-1.9
4,634,490	+				-0.7
4,634,495	+				-0.2
4,634,498	-				+0.0
4,634,498	-				-0.3
4,634,498	-				+0.1
4,634,498	-				-1.0
4,634,518	-				+1.0
4,634,518	-				-1.4
4,634,543	-				-0.8
4,634,581	+				-2.7
4,634,583	-				-0.0
4,634,617	+				-1.3
4,634,625	+				+0.4
4,634,625	+				+0.1
4,634,633	-				-0.0
4,634,633	-				-2.1
4,634,645	+		GFF4635	0.10	-0.3
4,634,645	+		GFF4635	0.10	-0.8
4,634,645	+		GFF4635	0.10	-0.1
4,634,645	+		GFF4635	0.10	+0.5
4,634,645	+		GFF4635	0.10	-1.7
4,634,645	+		GFF4635	0.10	-0.0
4,634,652	+		GFF4635	0.11	+0.7
4,634,653	-		GFF4635	0.11	-0.2
4,634,653	-		GFF4635	0.11	+0.1
4,634,653	-		GFF4635	0.11	-0.9
4,634,653	-		GFF4635	0.11	-0.7
4,634,653	-		GFF4635	0.11	+0.0
4,634,653	-		GFF4635	0.11	-0.3
4,634,653	-		GFF4635	0.11	-0.6
4,634,653	-		GFF4635	0.11	+0.0
4,634,653	-		GFF4635	0.11	+0.2
4,634,653	-		GFF4635	0.11	+0.2
4,634,653	-		GFF4635	0.11	-0.0
4,634,653	-		GFF4635	0.11	-0.3
4,634,654	+		GFF4635	0.11	+0.0
4,634,695	+		GFF4635	0.15	-0.3
4,634,713	-		GFF4635	0.17	+1.2
4,634,718	+		GFF4635	0.17	+0.9
4,634,728	+		GFF4635	0.18	-0.7
4,634,792	+		GFF4635	0.24	+0.2
4,634,792	+		GFF4635	0.24	+0.4
4,634,792	+		GFF4635	0.24	+0.2
4,634,795	-		GFF4635	0.24	-1.3
4,634,800	-		GFF4635	0.25	+0.3
4,634,813	+		GFF4635	0.26	-1.9
4,634,813	+		GFF4635	0.26	+0.8
4,634,813	+		GFF4635	0.26	+0.8
4,634,821	-		GFF4635	0.27	-0.8
4,634,821	-		GFF4635	0.27	+0.9
4,634,821	-		GFF4635	0.27	-0.1
4,634,821	-		GFF4635	0.27	-0.9
4,634,821	-		GFF4635	0.27	+0.7
4,634,845	-		GFF4635	0.29	-0.3
4,634,855	-		GFF4635	0.30	+0.9
4,634,867	+		GFF4635	0.31	-0.1
4,634,876	-		GFF4635	0.32	-0.5
4,634,882	-		GFF4635	0.32	+0.0
4,634,893	+		GFF4635	0.33	-0.7
4,634,896	-		GFF4635	0.34	+0.0
4,634,896	-		GFF4635	0.34	-0.5
4,634,914	+		GFF4635	0.35	-0.8
4,634,917	+		GFF4635	0.36	-0.2
4,634,925	-		GFF4635	0.36	-0.3
4,634,925	-		GFF4635	0.36	-0.2
4,634,939	-		GFF4635	0.38	-0.4
4,635,017	+		GFF4635	0.45	-0.6
4,635,018	+		GFF4635	0.45	-1.4
4,635,018	+		GFF4635	0.45	-1.3
4,635,022	+		GFF4635	0.45	+0.2
4,635,024	-		GFF4635	0.45	-1.0
4,635,027	+		GFF4635	0.46	+1.2
4,635,040	+		GFF4635	0.47	+0.6
4,635,041	+		GFF4635	0.47	-0.8
4,635,049	-		GFF4635	0.48	+0.2
4,635,049	-		GFF4635	0.48	+0.2
4,635,053	-		GFF4635	0.48	-1.0
4,635,053	-		GFF4635	0.48	+0.3
4,635,071	+		GFF4635	0.50	-1.1
4,635,071	+		GFF4635	0.50	-1.0
4,635,093	-		GFF4635	0.52	-0.5
4,635,095	+		GFF4635	0.52	-1.3
4,635,114	+		GFF4635	0.54	-0.6
4,635,118	-		GFF4635	0.54	+0.6
4,635,125	+		GFF4635	0.55	-0.8
4,635,159	+		GFF4635	0.58	-0.4
4,635,163	+		GFF4635	0.58	-0.7
4,635,163	+		GFF4635	0.58	-0.7
4,635,164	+		GFF4635	0.58	-0.7
4,635,169	+		GFF4635	0.59	-2.4
4,635,172	-		GFF4635	0.59	-0.3
4,635,177	+		GFF4635	0.59	-1.2
4,635,177	+		GFF4635	0.59	-0.4
4,635,177	+		GFF4635	0.59	+0.1
4,635,177	+		GFF4635	0.59	-0.0
4,635,177	-		GFF4635	0.59	-0.4
4,635,182	-		GFF4635	0.60	+0.4
4,635,239	-		GFF4635	0.65	-1.3
4,635,241	+		GFF4635	0.65	-0.4
4,635,249	-		GFF4635	0.66	+0.1
4,635,274	-		GFF4635	0.68	-0.6
4,635,295	-		GFF4635	0.70	+0.8
4,635,298	+		GFF4635	0.71	+0.3
4,635,298	+		GFF4635	0.71	-2.2
4,635,303	-		GFF4635	0.71	-0.8
4,635,307	-		GFF4635	0.71	+0.2
4,635,352	-		GFF4635	0.76	+0.1
4,635,381	+		GFF4635	0.78	-0.0
4,635,381	+		GFF4635	0.78	-0.5
4,635,389	-		GFF4635	0.79	-1.7
4,635,423	+		GFF4635	0.82	+1.3
4,635,424	-		GFF4635	0.82	-0.7
4,635,424	-		GFF4635	0.82	-0.4
4,635,424	-		GFF4635	0.82	-0.8
4,635,424	-		GFF4635	0.82	-0.6
4,635,447	+		GFF4635	0.84	-0.2
4,635,452	+		GFF4635	0.85	-2.8
4,635,455	-		GFF4635	0.85	-0.6
4,635,455	-		GFF4635	0.85	-1.2
4,635,455	-		GFF4635	0.85	-1.6
4,635,460	-		GFF4635	0.86	+1.1
4,635,460	-		GFF4635	0.86	-1.4
4,635,460	-		GFF4635	0.86	+0.3
4,635,460	-		GFF4635	0.86	-1.3
4,635,460	-		GFF4635	0.86	-1.4
4,635,460	-		GFF4635	0.86	-0.8
4,635,460	-		GFF4635	0.86	+0.5
4,635,465	+		GFF4635	0.86	-1.1
4,635,466	+		GFF4635	0.86	-1.4
4,635,466	-		GFF4635	0.86	-1.5
4,635,473	+		GFF4635	0.87	-0.3
4,635,474	-		GFF4635	0.87	-0.2
4,635,474	-		GFF4635	0.87	+0.5
4,635,474	-		GFF4635	0.87	-1.8
4,635,474	-		GFF4635	0.87	-2.6
4,635,474	-		GFF4635	0.87	-1.6
4,635,485	-		GFF4635	0.88	+1.3
4,635,492	+		GFF4635	0.88	-2.6
4,635,510	+				-0.8
4,635,518	-				-1.5
4,635,518	-				-2.2
4,635,518	-				+0.0
4,635,523	+				+0.0
4,635,546	-				-0.1
4,635,590	+				-0.4
4,635,617	+				-1.3
4,635,630	+				-0.1
4,635,633	-				-2.0
4,635,638	-				-2.3
4,635,660	+				-1.6
4,635,662	+				-0.1
4,635,666	-				-1.6
4,635,666	-				+1.0
4,635,666	-				-1.0
4,635,668	-				-0.5
4,635,670	-				-0.3
4,635,677	+				-0.4
4,635,677	+				+0.1
4,635,677	+				-0.3
4,635,685	-				-0.2
4,635,685	-				+0.7
4,635,708	-				+0.7
4,635,713	-				-2.1
4,635,717	-				+0.8
4,635,720	+				+1.5
4,635,720	+				-1.1
4,635,728	-				-1.9
4,635,728	-				-0.8
4,635,730	+				-1.6
4,635,779	+				+0.1
4,635,779	+				-1.8
4,635,779	+				-0.3
4,635,779	+				-0.6
4,635,779	+				-1.8
4,635,779	+				-0.4
4,635,779	+				-0.5
4,635,779	+				-0.6
4,635,782	-				-2.0
4,635,784	+				-0.4
4,635,787	-				-0.6
4,635,787	-				-0.5
4,635,787	-				-0.4
4,635,787	-				-0.1
4,635,787	-				-0.8
4,635,797	-				-2.0
4,635,803	+				-0.8
4,635,818	+				-0.3
4,635,820	-				-1.3
4,635,833	+				-1.8
4,635,860	+				+0.3
4,635,865	+				-0.4
4,635,865	+				+0.1
4,635,868	-				-1.1
4,635,873	-				+0.1
4,635,873	-				-1.4
4,635,873	-				-1.5
4,635,885	+				-0.1
4,635,917	+		GFF4636	0.13	-2.5
4,635,952	-		GFF4636	0.18	+0.5
4,635,957	+		GFF4636	0.18	+1.1
4,635,985	+		GFF4636	0.22	-0.4
4,635,990	+		GFF4636	0.23	-1.3
4,635,990	+		GFF4636	0.23	+0.6
4,635,993	-		GFF4636	0.23	+1.4
4,635,993	-		GFF4636	0.23	-0.6
4,635,995	+		GFF4636	0.23	-0.2
4,635,997	+		GFF4636	0.24	-0.4
4,635,998	-		GFF4636	0.24	+1.2
4,636,002	+		GFF4636	0.24	-0.3
4,636,003	-		GFF4636	0.24	+0.3
4,636,005	-		GFF4636	0.25	-1.9
4,636,034	-		GFF4636	0.28	-1.6
4,636,052	+		GFF4636	0.31	+0.6
4,636,059	+		GFF4636	0.32	+0.8
4,636,059	+		GFF4636	0.32	+0.5
4,636,059	+		GFF4636	0.32	-1.2
4,636,059	+		GFF4636	0.32	+1.2
4,636,059	+		GFF4636	0.32	+0.5
4,636,059	+		GFF4636	0.32	-1.8
4,636,059	+		GFF4636	0.32	-0.6
4,636,067	-		GFF4636	0.33	-2.1
4,636,077	-		GFF4636	0.34	-2.8
4,636,092	-		GFF4636	0.36	-0.9
4,636,122	+		GFF4636	0.40	+0.5
4,636,134	-		GFF4636	0.41	-2.6
4,636,135	-		GFF4636	0.42	-0.1
4,636,135	-		GFF4636	0.42	-1.2
4,636,135	-		GFF4636	0.42	-0.0
4,636,141	-		GFF4636	0.42	+0.1
4,636,172	-		GFF4636	0.46	-1.0
4,636,172	-		GFF4636	0.46	-0.5
4,636,189	+		GFF4636	0.49	+0.2
4,636,191	+		GFF4636	0.49	-0.1
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