Strain Fitness in Sphingobium sp. HT1-2 around GFF4633

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,629,978	+		GFF4632	0.64	-1.4
4,629,981	-		GFF4632	0.64	-0.7
4,629,991	+		GFF4632	0.64	+0.5
4,629,994	+		GFF4632	0.64	+0.2
4,629,999	-		GFF4632	0.65	+0.4
4,629,999	-		GFF4632	0.65	+0.7
4,629,999	-		GFF4632	0.65	-0.9
4,629,999	-		GFF4632	0.65	+0.3
4,629,999	-		GFF4632	0.65	+0.9
4,630,030	+		GFF4632	0.66	-2.0
4,630,038	-		GFF4632	0.66	+0.6
4,630,038	-		GFF4632	0.66	-1.0
4,630,038	-		GFF4632	0.66	-2.1
4,630,038	-		GFF4632	0.66	+0.1
4,630,057	+		GFF4632	0.67	-0.4
4,630,106	+		GFF4632	0.70	-0.4
4,630,106	-		GFF4632	0.70	-1.6
4,630,113	+		GFF4632	0.70	-0.6
4,630,113	+		GFF4632	0.70	-0.6
4,630,121	-		GFF4632	0.70	+1.5
4,630,133	-		GFF4632	0.71	-1.1
4,630,139	-		GFF4632	0.71	-0.9
4,630,146	+		GFF4632	0.71	-1.7
4,630,146	+		GFF4632	0.71	+0.9
4,630,202	+		GFF4632	0.74	-0.1
4,630,206	-		GFF4632	0.74	-1.9
4,630,206	-		GFF4632	0.74	+0.9
4,630,208	+		GFF4632	0.74	-1.9
4,630,210	-		GFF4632	0.74	-1.4
4,630,221	+		GFF4632	0.75	+1.7
4,630,221	+		GFF4632	0.75	-1.1
4,630,228	+		GFF4632	0.75	+0.9
4,630,229	-		GFF4632	0.75	-2.1
4,630,229	-		GFF4632	0.75	+0.6
4,630,240	+		GFF4632	0.76	-2.1
4,630,240	+		GFF4632	0.76	+0.2
4,630,248	-		GFF4632	0.76	-0.6
4,630,248	-		GFF4632	0.76	-1.8
4,630,276	-		GFF4632	0.78	+0.2
4,630,285	+		GFF4632	0.78	-1.7
4,630,291	-		GFF4632	0.78	-0.6
4,630,324	-		GFF4632	0.80	-0.7
4,630,324	-		GFF4632	0.80	+0.1
4,630,324	-		GFF4632	0.80	+0.5
4,630,341	-		GFF4632	0.81	-0.2
4,630,341	-		GFF4632	0.81	-0.3
4,630,342	+		GFF4632	0.81	-1.1
4,630,350	-		GFF4632	0.81	+0.5
4,630,350	-		GFF4632	0.81	-1.4
4,630,371	+		GFF4632	0.82	-0.7
4,630,376	+		GFF4632	0.82	-0.0
4,630,376	+		GFF4632	0.82	+0.2
4,630,384	-		GFF4632	0.83	+0.4
4,630,384	-		GFF4632	0.83	+0.0
4,630,389	-		GFF4632	0.83	-1.7
4,630,389	-		GFF4632	0.83	-0.6
4,630,389	-		GFF4632	0.83	-1.5
4,630,389	-		GFF4632	0.83	-1.1
4,630,389	-		GFF4632	0.83	-0.0
4,630,389	-		GFF4632	0.83	-1.6
4,630,389	-		GFF4632	0.83	-1.7
4,630,389	-		GFF4632	0.83	-0.1
4,630,397	+		GFF4632	0.83	-0.9
4,630,397	+		GFF4632	0.83	-0.4
4,630,397	+		GFF4632	0.83	+0.3
4,630,405	-		GFF4632	0.84	-0.7
4,630,405	-		GFF4632	0.84	-0.4
4,630,405	-		GFF4632	0.84	-1.6
4,630,413	-		GFF4632	0.84	+0.9
4,630,413	-		GFF4632	0.84	+0.2
4,630,419	-		GFF4632	0.84	-1.9
4,630,427	+		GFF4632	0.85	+0.4
4,630,427	+		GFF4632	0.85	-0.4
4,630,427	+		GFF4632	0.85	+0.7
4,630,427	+		GFF4632	0.85	+0.4
4,630,427	+		GFF4632	0.85	+0.7
4,630,435	-		GFF4632	0.85	+0.8
4,630,435	-		GFF4632	0.85	+0.4
4,630,435	-		GFF4632	0.85	-0.9
4,630,435	-		GFF4632	0.85	+0.4
4,630,452	+		GFF4632	0.86	-0.6
4,630,460	-		GFF4632	0.86	-0.6
4,630,460	-		GFF4632	0.86	+0.3
4,630,461	-		GFF4632	0.86	+0.3
4,630,462	+		GFF4632	0.86	+0.7
4,630,470	-		GFF4632	0.87	-0.6
4,630,482	+		GFF4632	0.87	-0.4
4,630,506	+		GFF4632	0.88	-0.1
4,630,507	+		GFF4632	0.88	-0.8
4,630,521	-		GFF4632	0.89	-0.6
4,630,521	-		GFF4632	0.89	+0.0
4,630,581	+				-0.1
4,630,603	-				-0.8
4,630,606	+				+0.1
4,630,640	-				-0.8
4,630,640	-				+0.3
4,630,663	-				+0.4
4,630,663	-				-1.3
4,630,665	+				-1.9
4,630,700	+				-0.9
4,630,706	+				+1.0
4,630,706	+				+0.1
4,630,706	+				-1.4
4,630,714	-				-0.7
4,630,714	-				-0.4
4,630,714	-				+0.2
4,630,714	-				+0.0
4,630,714	-				+0.0
4,630,714	-				-1.5
4,630,714	-				-0.2
4,630,727	-				+0.0
4,630,727	-				-1.3
4,630,757	-				-0.4
4,630,777	-				+0.3
4,630,777	-				+0.0
4,630,777	-				-0.5
4,630,837	+				+1.2
4,630,885	-				-2.3
4,630,901	+				-0.8
4,630,930	+				-0.9
4,630,930	+				-1.8
4,630,933	-				-1.2
4,630,939	+				-0.3
4,630,953	+				-1.3
4,630,961	+				-0.1
4,630,969	-				-1.4
4,630,969	-				+0.2
4,630,983	+				-2.0
4,630,995	-				+0.8
4,631,000	+				-0.6
4,631,011	+				+1.5
4,631,011	+				-0.1
4,631,016	+				+0.1
4,631,016	+				-0.3
4,631,016	+				+0.0
4,631,021	+				-0.6
4,631,021	+				-1.7
4,631,028	-				+0.2
4,631,029	-				-1.7
4,631,029	-				+0.2
4,631,075	-				-0.9
4,631,080	+				+0.0
4,631,090	+				-0.3
4,631,090	+				-0.1
4,631,093	-				+0.2
4,631,093	-				-0.3
4,631,095	+				-0.3
4,631,098	-				-0.4
4,631,098	-				+0.4
4,631,124	+				-2.1
4,631,132	+				+0.7
4,631,132	-				-1.4
4,631,132	-				-1.6
4,631,132	-				-1.6
4,631,132	-				-0.3
4,631,143	+				-1.6
4,631,148	+				+0.0
4,631,151	-				+1.6
4,631,173	+				+0.0
4,631,173	+				-0.4
4,631,173	+				+0.2
4,631,173	+				-0.6
4,631,173	+				-0.4
4,631,181	-				+0.2
4,631,181	-				+0.9
4,631,181	-				-1.0
4,631,184	+				+0.2
4,631,184	+				-0.3
4,631,184	+				+1.0
4,631,184	+				-0.3
4,631,184	+				+0.7
4,631,192	-		GFF4633	0.10	-2.9
4,631,192	-		GFF4633	0.10	-2.0
4,631,192	-		GFF4633	0.10	+0.2
4,631,192	-		GFF4633	0.10	+0.0
4,631,192	-		GFF4633	0.10	-1.4
4,631,205	+		GFF4633	0.11	-0.3
4,631,216	-		GFF4633	0.11	+0.2
4,631,217	-		GFF4633	0.11	+0.2
4,631,240	+		GFF4633	0.12	+0.2
4,631,240	-		GFF4633	0.12	-0.8
4,631,248	-		GFF4633	0.12	-0.3
4,631,263	+		GFF4633	0.13	-1.9
4,631,266	-		GFF4633	0.13	-0.9
4,631,271	-		GFF4633	0.13	-0.5
4,631,301	+		GFF4633	0.15	+1.5
4,631,304	+		GFF4633	0.15	-0.2
4,631,324	-		GFF4633	0.16	+0.8
4,631,384	+		GFF4633	0.18	-0.7
4,631,384	+		GFF4633	0.18	-1.1
4,631,384	+		GFF4633	0.18	+0.0
4,631,392	-		GFF4633	0.19	-0.9
4,631,393	+		GFF4633	0.19	-1.7
4,631,444	-		GFF4633	0.21	+0.4
4,631,454	+		GFF4633	0.21	+1.1
4,631,467	-		GFF4633	0.22	+0.6
4,631,467	-		GFF4633	0.22	+0.0
4,631,468	+		GFF4633	0.22	+0.3
4,631,513	-		GFF4633	0.24	-1.6
4,631,530	+		GFF4633	0.24	+0.5
4,631,530	+		GFF4633	0.24	+0.4
4,631,530	+		GFF4633	0.24	-0.1
4,631,538	-		GFF4633	0.25	+0.3
4,631,544	+		GFF4633	0.25	-0.1
4,631,548	+		GFF4633	0.25	-0.6
4,631,556	+		GFF4633	0.25	+1.6
4,631,556	+		GFF4633	0.25	-0.8
4,631,556	-		GFF4633	0.25	-0.8
4,631,556	-		GFF4633	0.25	+0.4
4,631,556	-		GFF4633	0.25	-2.4
4,631,556	-		GFF4633	0.25	+0.1
4,631,564	-		GFF4633	0.26	+0.3
4,631,564	-		GFF4633	0.26	+0.4
4,631,576	+		GFF4633	0.26	+0.5
4,631,576	+		GFF4633	0.26	+0.1
4,631,576	+		GFF4633	0.26	+0.4
4,631,576	+		GFF4633	0.26	-0.2
4,631,576	+		GFF4633	0.26	+0.7
4,631,584	-		GFF4633	0.27	+0.9
4,631,584	-		GFF4633	0.27	-0.6
4,631,584	-		GFF4633	0.27	-0.9
4,631,584	-		GFF4633	0.27	-1.1
4,631,589	-		GFF4633	0.27	-0.2
4,631,598	-		GFF4633	0.27	-0.2
4,631,622	-		GFF4633	0.28	-0.5
4,631,631	+		GFF4633	0.28	-0.7
4,631,631	+		GFF4633	0.28	-0.4
4,631,631	+		GFF4633	0.28	-0.6
4,631,633	+		GFF4633	0.29	+0.0
4,631,633	+		GFF4633	0.29	-0.1
4,631,633	+		GFF4633	0.29	-0.3
4,631,639	-		GFF4633	0.29	-1.1
4,631,639	-		GFF4633	0.29	+1.1
4,631,639	-		GFF4633	0.29	-0.2
4,631,639	-		GFF4633	0.29	+1.2
4,631,641	-		GFF4633	0.29	-0.3
4,631,641	-		GFF4633	0.29	-1.0
4,631,641	-		GFF4633	0.29	+0.7
4,631,641	-		GFF4633	0.29	-0.6
4,631,648	+		GFF4633	0.29	-0.1
4,631,648	+		GFF4633	0.29	+0.7
4,631,648	+		GFF4633	0.29	-0.1
4,631,648	+		GFF4633	0.29	-3.0
4,631,649	-		GFF4633	0.29	-1.5
4,631,656	-		GFF4633	0.30	-0.4
4,631,656	-		GFF4633	0.30	+1.5
4,631,656	-		GFF4633	0.30	-1.7
4,631,706	+		GFF4633	0.32	+0.6
4,631,706	+		GFF4633	0.32	+0.5
4,631,714	+		GFF4633	0.32	-0.1
4,631,714	-		GFF4633	0.32	+0.6
4,631,714	-		GFF4633	0.32	-1.6
4,631,726	+		GFF4633	0.32	+0.1
4,631,729	+		GFF4633	0.33	+0.2
4,631,737	-		GFF4633	0.33	-0.2
4,631,746	-		GFF4633	0.33	-1.6
4,631,748	+		GFF4633	0.33	-0.2
4,631,761	+		GFF4633	0.34	+0.6
4,631,763	+		GFF4633	0.34	-1.8
4,631,794	+		GFF4633	0.35	-0.4
4,631,794	-		GFF4633	0.35	-2.1
4,631,802	-		GFF4633	0.36	-0.2
4,631,808	+		GFF4633	0.36	+0.2
4,631,808	+		GFF4633	0.36	+0.2
4,631,818	+		GFF4633	0.36	+0.9
4,631,831	+		GFF4633	0.37	-1.1
4,631,836	+		GFF4633	0.37	-0.4
4,631,839	-		GFF4633	0.37	-1.2
4,631,844	-		GFF4633	0.37	+0.0
4,631,861	+		GFF4633	0.38	+1.0
4,631,861	+		GFF4633	0.38	-0.7
4,631,861	+		GFF4633	0.38	+0.9
4,631,869	+		GFF4633	0.38	-0.7
4,631,869	-		GFF4633	0.38	+0.5
4,631,869	-		GFF4633	0.38	-0.4
4,631,869	-		GFF4633	0.38	+0.2
4,631,869	-		GFF4633	0.38	-1.2
4,631,907	-		GFF4633	0.40	+0.8
4,631,913	+		GFF4633	0.40	+0.1
4,631,918	+		GFF4633	0.40	+0.4
4,631,918	+		GFF4633	0.40	+0.6
4,631,918	+		GFF4633	0.40	-0.4
4,631,918	+		GFF4633	0.40	-2.6
4,631,918	+		GFF4633	0.40	-0.1
4,631,918	+		GFF4633	0.40	-0.2
4,631,918	+		GFF4633	0.40	-1.2
4,631,918	+		GFF4633	0.40	-2.1
4,631,918	+		GFF4633	0.40	-0.1
4,631,918	+		GFF4633	0.40	-0.7
4,631,918	+		GFF4633	0.40	-1.8
4,631,921	-		GFF4633	0.41	+0.1
4,631,926	-		GFF4633	0.41	+0.2
4,631,926	-		GFF4633	0.41	-1.1
4,631,926	-		GFF4633	0.41	-0.5
4,631,926	-		GFF4633	0.41	+1.2
4,631,926	-		GFF4633	0.41	-0.5
4,631,926	-		GFF4633	0.41	-1.5
4,631,926	-		GFF4633	0.41	-0.4
4,631,926	-		GFF4633	0.41	-0.5
4,631,927	+		GFF4633	0.41	-1.1
4,631,927	+		GFF4633	0.41	-1.4
4,631,935	-		GFF4633	0.41	+0.1
4,631,935	-		GFF4633	0.41	+0.1
4,631,936	-		GFF4633	0.41	-1.5
4,631,937	+		GFF4633	0.41	+0.1
4,631,939	+		GFF4633	0.41	-2.0
4,631,949	+		GFF4633	0.42	-2.4
4,631,949	+		GFF4633	0.42	-1.3
4,631,949	-		GFF4633	0.42	-0.1
4,631,954	+		GFF4633	0.42	+0.2
4,631,971	-		GFF4633	0.43	+0.3
4,631,981	-		GFF4633	0.43	-1.6
4,631,981	-		GFF4633	0.43	-0.4
4,631,988	+		GFF4633	0.43	-0.2
4,632,006	+		GFF4633	0.44	+0.3
4,632,010	+		GFF4633	0.44	+0.9
4,632,015	+		GFF4633	0.45	-0.9
4,632,018	-		GFF4633	0.45	+0.7
4,632,025	+		GFF4633	0.45	+1.0
4,632,028	-		GFF4633	0.45	+0.0
4,632,028	-		GFF4633	0.45	+1.0
4,632,034	+		GFF4633	0.45	-1.4
4,632,040	+		GFF4633	0.46	+0.6
4,632,042	-		GFF4633	0.46	-0.4
4,632,043	-		GFF4633	0.46	+1.3
4,632,043	-		GFF4633	0.46	+0.5
4,632,059	+		GFF4633	0.46	-1.9
4,632,097	+		GFF4633	0.48	-1.0
4,632,119	+		GFF4633	0.49	-0.0
4,632,127	-		GFF4633	0.49	+0.2
4,632,127	-		GFF4633	0.49	-0.1
4,632,127	-		GFF4633	0.49	+0.2
4,632,127	-		GFF4633	0.49	-1.1
4,632,148	+		GFF4633	0.50	-1.4
4,632,148	-		GFF4633	0.50	+0.6
4,632,148	-		GFF4633	0.50	-1.1
4,632,156	-		GFF4633	0.50	-1.3
4,632,156	-		GFF4633	0.50	-1.6
4,632,178	+		GFF4633	0.51	-2.5
4,632,235	+		GFF4633	0.54	+1.4
4,632,235	+		GFF4633	0.54	-1.8
4,632,243	-		GFF4633	0.54	-0.8
4,632,243	-		GFF4633	0.54	-0.1
4,632,245	+		GFF4633	0.54	-1.7
4,632,271	+		GFF4633	0.55	-0.3
4,632,273	-		GFF4633	0.55	-0.6
4,632,301	+		GFF4633	0.56	-1.6
4,632,320	+		GFF4633	0.57	-1.9
4,632,322	+		GFF4633	0.57	-0.7
4,632,322	+		GFF4633	0.57	-0.8
4,632,330	-		GFF4633	0.58	+0.3
4,632,332	+		GFF4633	0.58	-1.1
4,632,332	+		GFF4633	0.58	-2.2
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4,632,365	-		GFF4633	0.59	-1.6
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4,632,398	-		GFF4633	0.61	-0.8
4,632,398	-		GFF4633	0.61	-0.8
4,632,404	+		GFF4633	0.61	+0.4
4,632,407	+		GFF4633	0.61	-2.2
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4,632,468	+		GFF4633	0.63	-2.2
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4,632,515	-		GFF4633	0.65	-0.8
4,632,515	-		GFF4633	0.65	-0.1
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4,632,520	-		GFF4633	0.66	-1.9
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4,632,546	+		GFF4633	0.67	-1.1
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4,632,561	+		GFF4633	0.67	+1.1
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4,632,569	-		GFF4633	0.68	-1.3
4,632,569	-		GFF4633	0.68	-2.5
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4,632,569	-		GFF4633	0.68	-0.8
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4,632,569	-		GFF4633	0.68	-0.5
4,632,618	+		GFF4633	0.70	+0.6
4,632,628	+		GFF4633	0.70	-1.9
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4,632,649	-		GFF4633	0.71	-1.9
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4,632,658	-		GFF4633	0.71	+0.4
4,632,660	+		GFF4633	0.71	-0.3
4,632,660	-		GFF4633	0.71	-0.7
4,632,663	+		GFF4633	0.72	-1.3
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4,632,684	+		GFF4633	0.72	-0.8
4,632,692	-		GFF4633	0.73	-1.1
4,632,723	-		GFF4633	0.74	-0.4
4,632,750	+		GFF4633	0.75	-1.1
4,632,750	+		GFF4633	0.75	-1.6
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4,632,792	+		GFF4633	0.77	-0.1
4,632,823	+		GFF4633	0.78	-1.5
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4,632,831	-		GFF4633	0.79	-0.7
4,632,891	+		GFF4633	0.81	+0.2
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4,632,897	+		GFF4633	0.81	-1.3
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4,632,897	-		GFF4633	0.81	-0.6
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4,632,905	-		GFF4633	0.82	-0.5
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4,632,939	+		GFF4633	0.83	-0.1
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4,632,949	+		GFF4633	0.84	-1.9
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4,632,975	+		GFF4633	0.85	-1.8
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4,633,001	+		GFF4633	0.86	-0.0
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4,633,024	+		GFF4633	0.87	-1.8
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4,633,032	-		GFF4633	0.87	-0.9
4,633,032	-		GFF4633	0.87	-1.3
4,633,032	-		GFF4633	0.87	-2.6
4,633,041	+		GFF4633	0.87	-1.5
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4,633,041	+		GFF4633	0.87	-2.2
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4,633,049	-		GFF4633	0.88	-0.8
4,633,049	-		GFF4633	0.88	-1.9
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4,633,057	-		GFF4633	0.88	-0.6
4,633,061	+		GFF4633	0.88	-1.1
4,633,062	+		GFF4633	0.88	+0.3
4,633,093	+		GFF4633	0.90	-0.2
4,633,101	-		GFF4633	0.90	-0.4
4,633,112	-				+1.3
4,633,154	+				-0.8
4,633,154	+				-1.0
4,633,182	-				-2.0
4,633,182	-				-0.3
4,633,183	+				+0.7
4,633,220	+				-1.9
4,633,220	+				+0.4
4,633,247	-				-1.0
4,633,312	-				+0.0
4,633,316	+				-0.7
4,633,316	+				-0.8
4,633,317	-				+0.8
4,633,319	+				-0.4
4,633,319	-				+0.2
4,633,319	-				-1.6
4,633,326	+				-1.0
4,633,326	+				+1.3
4,633,326	+				+0.9
4,633,326	+				-2.1
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4,633,331	+				+0.4
4,633,331	+				-0.9
4,633,331	+				-0.5
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4,633,334	-				+0.4
4,633,334	-				+0.2
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4,633,334	-				-0.5
4,633,334	-				-1.0
4,633,334	-				+1.0
4,633,336	+				-0.3
4,633,336	+				-0.4
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4,633,339	-				-0.2
4,633,339	-				-1.9
4,633,339	-				-1.0
4,633,339	-				+0.9
4,633,339	-				-1.5
4,633,368	-				+0.3
4,633,370	+				-0.2
4,633,370	+				-1.2
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4,633,392	-				-0.4
4,633,423	+				-0.4
4,633,438	+				-2.8
4,633,453	-				-1.8
4,633,453	-				-1.4
4,633,466	+				-0.5
4,633,474	-				-0.6
4,633,474	-				+0.5
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