Strain Fitness in Sphingobium sp. HT1-2 around GFF4631

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,627,324	+		GFF4630	0.34	-1.3
4,627,340	+		GFF4630	0.35	-2.4
4,627,340	+		GFF4630	0.35	-2.6
4,627,342	-		GFF4630	0.35	-1.8
4,627,345	+		GFF4630	0.35	+0.1
4,627,345	+		GFF4630	0.35	+0.3
4,627,345	+		GFF4630	0.35	-1.0
4,627,345	+		GFF4630	0.35	-0.2
4,627,353	-		GFF4630	0.36	-0.1
4,627,353	-		GFF4630	0.36	-1.2
4,627,365	-		GFF4630	0.37	-0.2
4,627,365	-		GFF4630	0.37	-0.8
4,627,372	-		GFF4630	0.37	-0.4
4,627,382	+		GFF4630	0.38	-0.1
4,627,384	+		GFF4630	0.38	+0.0
4,627,384	+		GFF4630	0.38	-1.6
4,627,389	+		GFF4630	0.38	-1.4
4,627,395	+		GFF4630	0.38	-0.7
4,627,397	-		GFF4630	0.39	-1.4
4,627,397	-		GFF4630	0.39	+0.1
4,627,403	-		GFF4630	0.39	-0.9
4,627,403	-		GFF4630	0.39	-0.6
4,627,421	+		GFF4630	0.40	-0.9
4,627,430	+		GFF4630	0.41	+0.0
4,627,449	-		GFF4630	0.42	-0.4
4,627,449	-		GFF4630	0.42	-1.2
4,627,450	-		GFF4630	0.42	+1.2
4,627,469	-		GFF4630	0.43	+0.4
4,627,471	+		GFF4630	0.43	+0.2
4,627,474	-		GFF4630	0.44	-0.9
4,627,479	-		GFF4630	0.44	-0.4
4,627,484	+		GFF4630	0.44	-0.8
4,627,484	+		GFF4630	0.44	+0.2
4,627,503	+		GFF4630	0.46	+0.4
4,627,511	-		GFF4630	0.46	-1.4
4,627,511	-		GFF4630	0.46	-0.5
4,627,593	+		GFF4630	0.52	+1.1
4,627,601	-		GFF4630	0.52	-0.7
4,627,638	+		GFF4630	0.55	-0.5
4,627,654	-		GFF4630	0.56	+1.2
4,627,656	-		GFF4630	0.56	-1.2
4,627,662	-		GFF4630	0.56	-0.8
4,627,666	+		GFF4630	0.56	-0.9
4,627,666	+		GFF4630	0.56	-0.4
4,627,666	+		GFF4630	0.56	-0.1
4,627,671	+		GFF4630	0.57	-2.0
4,627,674	-		GFF4630	0.57	+0.9
4,627,674	-		GFF4630	0.57	-2.9
4,627,674	-		GFF4630	0.57	-0.3
4,627,674	-		GFF4630	0.57	+0.6
4,627,689	+		GFF4630	0.58	+1.3
4,627,706	+		GFF4630	0.59	-0.1
4,627,707	-		GFF4630	0.59	-1.9
4,627,712	-		GFF4630	0.59	+0.8
4,627,712	-		GFF4630	0.59	+0.0
4,627,724	+		GFF4630	0.60	-1.4
4,627,725	-		GFF4630	0.60	+0.3
4,627,735	+		GFF4630	0.61	-1.6
4,627,735	+		GFF4630	0.61	-0.2
4,627,735	+		GFF4630	0.61	-1.4
4,627,751	-		GFF4630	0.62	-0.4
4,627,773	-		GFF4630	0.63	-1.9
4,627,773	-		GFF4630	0.63	+0.3
4,627,773	-		GFF4630	0.63	-2.0
4,627,779	+		GFF4630	0.64	-0.8
4,627,787	-		GFF4630	0.64	-0.1
4,627,787	-		GFF4630	0.64	-0.4
4,627,787	-		GFF4630	0.64	-2.3
4,627,787	-		GFF4630	0.64	+1.2
4,627,794	+		GFF4630	0.65	+0.5
4,627,794	+		GFF4630	0.65	+0.3
4,627,802	-		GFF4630	0.65	-0.4
4,627,812	+		GFF4630	0.66	+0.0
4,627,812	+		GFF4630	0.66	-1.7
4,627,812	+		GFF4630	0.66	-0.6
4,627,812	+		GFF4630	0.66	-2.0
4,627,812	+		GFF4630	0.66	-2.0
4,627,820	-		GFF4630	0.67	+0.2
4,627,820	-		GFF4630	0.67	-1.1
4,627,820	-		GFF4630	0.67	-0.2
4,627,851	+		GFF4630	0.69	+0.3
4,627,904	+		GFF4630	0.72	-0.2
4,627,912	-		GFF4630	0.73	-1.8
4,627,918	-		GFF4630	0.73	-0.6
4,627,932	+		GFF4630	0.74	+0.4
4,627,940	-		GFF4630	0.74	-2.4
4,627,981	+		GFF4630	0.77	-1.0
4,628,021	-		GFF4630	0.80	+0.0
4,628,024	+		GFF4630	0.80	+0.1
4,628,029	+		GFF4630	0.80	+0.6
4,628,029	+		GFF4630	0.80	-0.9
4,628,029	+		GFF4630	0.80	-0.7
4,628,029	+		GFF4630	0.80	-0.8
4,628,029	+		GFF4630	0.80	-0.7
4,628,029	+		GFF4630	0.80	-1.0
4,628,029	+		GFF4630	0.80	+0.5
4,628,029	+		GFF4630	0.80	+0.6
4,628,032	-		GFF4630	0.81	-3.1
4,628,037	-		GFF4630	0.81	-1.1
4,628,037	-		GFF4630	0.81	-0.5
4,628,037	-		GFF4630	0.81	-0.6
4,628,037	-		GFF4630	0.81	-1.6
4,628,037	-		GFF4630	0.81	+0.9
4,628,037	-		GFF4630	0.81	-0.3
4,628,037	-		GFF4630	0.81	+0.6
4,628,037	-		GFF4630	0.81	+0.0
4,628,037	-		GFF4630	0.81	-1.7
4,628,037	-		GFF4630	0.81	-0.7
4,628,037	-		GFF4630	0.81	+0.2
4,628,037	-		GFF4630	0.81	+0.9
4,628,040	+		GFF4630	0.81	-0.8
4,628,049	+		GFF4630	0.82	+1.2
4,628,049	+		GFF4630	0.82	+1.3
4,628,049	+		GFF4630	0.82	-1.4
4,628,049	+		GFF4630	0.82	-1.8
4,628,049	+		GFF4630	0.82	-1.1
4,628,049	+		GFF4630	0.82	+1.0
4,628,057	-		GFF4630	0.82	-0.4
4,628,067	+		GFF4630	0.83	-2.4
4,628,068	-		GFF4630	0.83	+1.2
4,628,077	+		GFF4630	0.83	+0.6
4,628,081	-		GFF4630	0.84	-0.8
4,628,081	-		GFF4630	0.84	+1.2
4,628,081	-		GFF4630	0.84	-1.1
4,628,085	-		GFF4630	0.84	+0.6
4,628,085	-		GFF4630	0.84	-0.4
4,628,096	-		GFF4630	0.85	+0.8
4,628,103	+		GFF4630	0.85	-0.5
4,628,111	-		GFF4630	0.86	+0.6
4,628,133	+		GFF4630	0.87	-1.7
4,628,141	+		GFF4630	0.88	+0.6
4,628,141	+		GFF4630	0.88	+0.2
4,628,149	-		GFF4630	0.88	-0.5
4,628,210	-				-1.6
4,628,211	+				-0.4
4,628,231	+				+0.2
4,628,236	+				+0.3
4,628,236	+				-0.0
4,628,236	+				+0.6
4,628,244	-				-0.5
4,628,254	+				-0.9
4,628,262	-				-2.0
4,628,264	+				-0.6
4,628,267	-				+0.2
4,628,284	-				-2.0
4,628,285	-				-1.8
4,628,285	-				-0.6
4,628,326	+				-1.6
4,628,330	-				+0.4
4,628,341	+				-1.4
4,628,341	+				-0.9
4,628,341	+				-0.4
4,628,342	+				+0.4
4,628,342	+				-0.2
4,628,342	+				-2.1
4,628,342	+				+0.2
4,628,342	+				-0.0
4,628,342	+				-1.2
4,628,342	+				+0.9
4,628,342	+				-1.8
4,628,342	+				+0.0
4,628,342	+				-0.8
4,628,342	+				-0.5
4,628,349	-				+0.6
4,628,349	-				-3.3
4,628,349	-				-1.9
4,628,349	-				-0.1
4,628,350	-				-0.7
4,628,350	-				-1.1
4,628,350	-				+0.5
4,628,350	-				-1.0
4,628,350	-				+0.6
4,628,350	-				+1.4
4,628,350	-				-0.1
4,628,350	-				+0.3
4,628,354	-		GFF4631	0.10	-0.3
4,628,364	-		GFF4631	0.13	-1.5
4,628,391	+		GFF4631	0.22	-0.3
4,628,391	+		GFF4631	0.22	-0.6
4,628,394	-		GFF4631	0.23	-1.8
4,628,397	+		GFF4631	0.24	-0.5
4,628,397	+		GFF4631	0.24	-0.0
4,628,399	-		GFF4631	0.25	+1.6
4,628,405	-		GFF4631	0.27	+0.1
4,628,420	+		GFF4631	0.31	-0.8
4,628,433	+		GFF4631	0.36	-2.9
4,628,433	+		GFF4631	0.36	-0.6
4,628,477	+		GFF4631	0.50	+0.1
4,628,478	+		GFF4631	0.50	-0.0
4,628,479	-		GFF4631	0.50	+0.3
4,628,486	-		GFF4631	0.53	-0.4
4,628,499	+		GFF4631	0.57	+0.7
4,628,501	+		GFF4631	0.58	+0.4
4,628,501	+		GFF4631	0.58	+0.3
4,628,501	+		GFF4631	0.58	+0.5
4,628,501	+		GFF4631	0.58	+1.6
4,628,501	+		GFF4631	0.58	-2.6
4,628,507	-		GFF4631	0.60	+0.8
4,628,509	-		GFF4631	0.60	+0.6
4,628,509	-		GFF4631	0.60	-0.8
4,628,509	-		GFF4631	0.60	-0.6
4,628,509	-		GFF4631	0.60	-1.1
4,628,509	-		GFF4631	0.60	-0.4
4,628,509	-		GFF4631	0.60	-1.7
4,628,550	-		GFF4631	0.73	+0.4
4,628,550	-		GFF4631	0.73	+1.2
4,628,561	+		GFF4631	0.77	-2.8
4,628,569	-		GFF4631	0.80	-0.2
4,628,571	+		GFF4631	0.80	-1.6
4,628,633	+				-1.4
4,628,634	-				-1.2
4,628,639	+				+0.8
4,628,646	+				-0.4
4,628,647	-				-0.0
4,628,664	-				-1.4
4,628,666	+				-0.6
4,628,666	+				+0.7
4,628,674	-				-2.6
4,628,674	-				-1.2
4,628,688	-				-1.2
4,628,688	-				-2.1
4,628,688	-				-0.1
4,628,690	+				-2.2
4,628,690	+				-1.5
4,628,694	-				+0.1
4,628,698	-				-0.6
4,628,700	+				+0.4
4,628,700	+				+0.5
4,628,705	+				-1.3
4,628,725	+				+0.1
4,628,732	+				+0.7
4,628,762	+				-0.7
4,628,770	-				-0.8
4,628,770	-				-0.1
4,628,778	-				-0.3
4,628,784	-				+0.4
4,628,786	+				+1.3
4,628,789	+				+0.7
4,628,789	+				-3.2
4,628,789	+				+0.6
4,628,791	+				+0.8
4,628,797	+				-1.4
4,628,797	-				-0.9
4,628,797	-				-0.1
4,628,799	-				-0.2
4,628,799	-				-0.2
4,628,799	-				-0.4
4,628,799	-				-0.6
4,628,802	-				-0.5
4,628,805	-				-0.6
4,628,807	-				-0.3
4,628,823	+				+0.3
4,628,823	+				-0.2
4,628,829	-				-0.6
4,628,831	-				+0.2
4,628,838	+				-1.2
4,628,846	-		GFF4632	0.10	-0.0
4,628,846	-		GFF4632	0.10	-0.6
4,628,863	-		GFF4632	0.11	+0.1
4,628,863	-		GFF4632	0.11	-0.0
4,628,870	+		GFF4632	0.11	-0.9
4,628,878	-		GFF4632	0.12	+0.1
4,628,897	+		GFF4632	0.13	-0.0
4,628,904	-		GFF4632	0.13	-0.5
4,628,905	-		GFF4632	0.13	-0.2
4,628,905	-		GFF4632	0.13	-0.8
4,628,905	-		GFF4632	0.13	-0.6
4,628,905	-		GFF4632	0.13	+0.7
4,628,913	-		GFF4632	0.13	-0.6
4,628,929	+		GFF4632	0.14	-1.8
4,628,929	+		GFF4632	0.14	+0.2
4,628,929	+		GFF4632	0.14	-2.2
4,628,929	+		GFF4632	0.14	-1.0
4,628,929	-		GFF4632	0.14	-0.2
4,628,929	-		GFF4632	0.14	-0.7
4,628,957	+		GFF4632	0.15	-0.6
4,628,963	+		GFF4632	0.16	-1.4
4,628,982	+		GFF4632	0.17	-0.4
4,629,005	+		GFF4632	0.18	+0.2
4,629,005	+		GFF4632	0.18	-1.1
4,629,006	+		GFF4632	0.18	+0.2
4,629,011	+		GFF4632	0.18	+0.4
4,629,013	-		GFF4632	0.18	-0.6
4,629,067	-		GFF4632	0.21	-1.8
4,629,074	+		GFF4632	0.21	+0.7
4,629,074	+		GFF4632	0.21	-0.4
4,629,082	-		GFF4632	0.21	-0.9
4,629,109	+		GFF4632	0.23	+0.5
4,629,118	+		GFF4632	0.23	+0.2
4,629,121	-		GFF4632	0.23	-2.1
4,629,122	-		GFF4632	0.23	-0.9
4,629,123	+		GFF4632	0.23	-2.4
4,629,126	-		GFF4632	0.23	+0.9
4,629,145	+		GFF4632	0.24	-0.2
4,629,145	-		GFF4632	0.24	-3.1
4,629,157	+		GFF4632	0.25	+0.2
4,629,158	-		GFF4632	0.25	+0.9
4,629,165	-		GFF4632	0.25	-0.1
4,629,167	-		GFF4632	0.25	+0.2
4,629,173	+		GFF4632	0.26	-0.6
4,629,177	-		GFF4632	0.26	-0.8
4,629,177	-		GFF4632	0.26	+0.5
4,629,185	-		GFF4632	0.26	-0.4
4,629,190	+		GFF4632	0.26	-0.8
4,629,190	+		GFF4632	0.26	-0.1
4,629,198	-		GFF4632	0.27	-1.1
4,629,198	-		GFF4632	0.27	-1.0
4,629,198	-		GFF4632	0.27	-1.4
4,629,198	-		GFF4632	0.27	-0.1
4,629,224	-		GFF4632	0.28	+0.9
4,629,254	+		GFF4632	0.29	-1.6
4,629,254	+		GFF4632	0.29	-1.4
4,629,258	-		GFF4632	0.30	-0.1
4,629,262	-		GFF4632	0.30	-0.3
4,629,262	-		GFF4632	0.30	-0.5
4,629,280	+		GFF4632	0.31	-0.1
4,629,288	-		GFF4632	0.31	-0.7
4,629,311	+		GFF4632	0.32	+0.2
4,629,323	+		GFF4632	0.33	-1.8
4,629,323	-		GFF4632	0.33	-0.5
4,629,331	-		GFF4632	0.33	-0.8
4,629,331	-		GFF4632	0.33	-2.5
4,629,337	-		GFF4632	0.33	-2.0
4,629,341	+		GFF4632	0.34	-1.5
4,629,343	+		GFF4632	0.34	+0.1
4,629,343	+		GFF4632	0.34	-0.4
4,629,351	-		GFF4632	0.34	-0.6
4,629,351	-		GFF4632	0.34	+0.0
4,629,351	-		GFF4632	0.34	+0.1
4,629,351	-		GFF4632	0.34	-1.6
4,629,351	-		GFF4632	0.34	+1.0
4,629,351	-		GFF4632	0.34	-0.8
4,629,351	-		GFF4632	0.34	-0.0
4,629,353	+		GFF4632	0.34	-0.8
4,629,353	+		GFF4632	0.34	+0.3
4,629,353	+		GFF4632	0.34	-1.0
4,629,353	+		GFF4632	0.34	-0.2
4,629,353	+		GFF4632	0.34	+0.2
4,629,353	+		GFF4632	0.34	+0.7
4,629,353	+		GFF4632	0.34	+2.0
4,629,353	+		GFF4632	0.34	+0.9
4,629,361	-		GFF4632	0.35	-0.7
4,629,397	+		GFF4632	0.36	-1.1
4,629,399	+		GFF4632	0.36	-0.3
4,629,399	-		GFF4632	0.36	-1.7
4,629,400	-		GFF4632	0.36	-1.2
4,629,405	-		GFF4632	0.37	+0.4
4,629,419	+		GFF4632	0.37	-0.2
4,629,444	+		GFF4632	0.38	-0.8
4,629,446	-		GFF4632	0.39	-2.2
4,629,451	+		GFF4632	0.39	-0.4
4,629,451	+		GFF4632	0.39	-0.5
4,629,451	+		GFF4632	0.39	-0.7
4,629,452	-		GFF4632	0.39	+1.4
4,629,479	-		GFF4632	0.40	+0.2
4,629,487	+		GFF4632	0.40	+0.2
4,629,487	+		GFF4632	0.40	-1.4
4,629,487	+		GFF4632	0.40	-0.1
4,629,487	+		GFF4632	0.40	-2.7
4,629,487	+		GFF4632	0.40	-2.1
4,629,487	+		GFF4632	0.40	-0.8
4,629,487	+		GFF4632	0.40	-2.9
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