Strain Fitness in Sphingobium sp. HT1-2 around GFF4595

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,587,011	-		GFF4593	0.65	+0.1
4,587,014	-		GFF4593	0.65	+0.7
4,587,036	+		GFF4593	0.67	-1.4
4,587,080	+		GFF4593	0.71	-1.0
4,587,087	-		GFF4593	0.71	-1.9
4,587,088	-		GFF4593	0.71	-0.2
4,587,095	+		GFF4593	0.72	-1.5
4,587,095	+		GFF4593	0.72	-0.3
4,587,095	+		GFF4593	0.72	+0.2
4,587,095	+		GFF4593	0.72	-0.1
4,587,103	-		GFF4593	0.72	-0.3
4,587,103	-		GFF4593	0.72	-0.9
4,587,113	-		GFF4593	0.73	-1.0
4,587,115	-		GFF4593	0.73	-0.2
4,587,127	+		GFF4593	0.74	+0.8
4,587,164	+		GFF4593	0.77	+0.3
4,587,164	+		GFF4593	0.77	+0.5
4,587,172	-		GFF4593	0.78	-0.3
4,587,172	-		GFF4593	0.78	-1.9
4,587,178	+		GFF4593	0.78	-0.8
4,587,220	+		GFF4593	0.81	-0.4
4,587,237	+		GFF4593	0.83	+0.2
4,587,237	+		GFF4593	0.83	-0.1
4,587,250	-		GFF4593	0.84	-0.2
4,587,252	+		GFF4593	0.84	-0.5
4,587,260	-		GFF4593	0.85	+0.0
4,587,265	-		GFF4593	0.85	-1.4
4,587,299	+		GFF4593	0.88	-2.6
4,587,307	-		GFF4593	0.88	-0.5
4,587,309	+		GFF4593	0.88	-1.0
4,587,316	+		GFF4593	0.89	-0.2
4,587,317	-		GFF4593	0.89	-0.7
4,587,318	+		GFF4593	0.89	-0.0
4,587,323	+		GFF4593	0.90	-1.3
4,587,346	+				+0.3
4,587,351	+				-0.2
4,587,351	+				+0.9
4,587,351	+				-1.0
4,587,351	+				+1.1
4,587,351	+				-0.0
4,587,352	+				-0.1
4,587,352	+				-0.9
4,587,354	-				-0.5
4,587,354	-				+0.3
4,587,359	-				-1.2
4,587,359	-				-0.8
4,587,359	-				-0.6
4,587,359	-				+0.6
4,587,379	-				-0.1
4,587,381	-				+0.7
4,587,381	-				+0.4
4,587,381	-				-2.2
4,587,381	-				-1.6
4,587,381	-				-0.2
4,587,392	-				-1.6
4,587,398	+				-0.1
4,587,399	+				+0.4
4,587,399	+				-0.6
4,587,407	-				-0.8
4,587,424	-				-2.5
4,587,449	+				+0.7
4,587,449	+				-0.3
4,587,451	+				-0.8
4,587,459	+				-0.0
4,587,508	-				-0.0
4,587,529	+				-0.8
4,587,530	+				-1.5
4,587,545	+				-0.3
4,587,545	+				-0.5
4,587,553	-				+1.0
4,587,558	-				-1.0
4,587,558	-				-1.2
4,587,560	+				+0.6
4,587,562	+				+0.0
4,587,562	+				+0.3
4,587,562	+				-1.2
4,587,568	-				-0.7
4,587,570	+				-1.5
4,587,570	-				-0.4
4,587,570	-				-1.8
4,587,570	-				-2.3
4,587,597	+				+0.7
4,587,597	+				-0.6
4,587,597	+				+0.2
4,587,597	+				+0.8
4,587,597	+				+0.2
4,587,597	+				-2.3
4,587,605	-				-0.4
4,587,605	-				+0.3
4,587,605	-				-2.0
4,587,605	-				-1.5
4,587,619	+				-1.0
4,587,619	+				+0.3
4,587,627	-				-1.5
4,587,628	-				+1.1
4,587,639	+				+0.7
4,587,639	+				+0.7
4,587,649	+				-0.2
4,587,657	-				-0.4
4,587,701	+				+0.7
4,587,701	+				+1.1
4,587,701	+				-0.2
4,587,701	+				-1.6
4,587,701	+				+0.1
4,587,701	+				-1.0
4,587,701	+				+0.6
4,587,709	-				-0.8
4,587,756	+				-0.8
4,587,771	+				-2.6
4,587,771	+				+0.8
4,587,771	+				+0.1
4,587,778	+				-1.6
4,587,779	-				-0.5
4,587,779	-				-0.3
4,587,779	-				+0.2
4,587,791	-				+0.6
4,587,797	+				-0.5
4,587,823	-				-1.3
4,587,856	-				+0.2
4,587,858	-				-1.5
4,587,877	-		GFF4594	0.14	-0.6
4,587,877	-		GFF4594	0.14	-0.1
4,588,163	-		GFF4595	0.56	-0.8
4,588,171	+		GFF4595	0.58	+1.6
4,588,197	-		GFF4595	0.67	-2.7
4,588,207	-		GFF4595	0.70	+0.1
4,588,209	+		GFF4595	0.71	-1.3
4,588,242	+		GFF4595	0.82	-0.3
4,588,242	+		GFF4595	0.82	+0.3
4,588,242	+		GFF4595	0.82	-2.2
4,588,244	-		GFF4595	0.82	-0.9
4,588,250	-		GFF4595	0.84	-0.3
4,588,250	-		GFF4595	0.84	-2.1
4,588,256	+		GFF4595	0.86	-0.1
4,588,264	-		GFF4595	0.89	+0.4
4,588,266	-		GFF4595	0.90	-0.0
4,588,315	-				-0.4
4,588,323	-				-1.7
4,588,324	+				-0.1
4,588,331	-				-0.7
4,588,340	-				-0.1
4,588,347	+				-0.4
4,588,380	-				-0.1
4,588,409	+				-0.1
4,588,418	+				-0.6
4,588,418	+				+0.8
4,588,419	+				-0.3
4,588,419	+				-1.1
4,588,419	+				+0.2
4,588,419	+				-1.1
4,588,419	+				-0.2
4,588,419	+				-2.2
4,588,419	+				+0.8
4,588,419	+				-0.3
4,588,419	+				+0.7
4,588,419	+				-1.7
4,588,419	+				-0.8
4,588,419	+				-1.0
4,588,426	-				-0.7
4,588,426	-				-1.8
4,588,426	-				+0.4
4,588,426	-				-0.3
4,588,427	-				+0.4
4,588,427	-				-0.5
4,588,427	-				-0.9
4,588,427	-				+0.1
4,588,427	-				+0.2
4,588,453	+		GFF4596	0.12	-2.3
4,588,454	-		GFF4596	0.12	+0.1
4,588,470	-		GFF4596	0.13	-1.2
4,588,472	+		GFF4596	0.13	+0.4
4,588,472	+		GFF4596	0.13	+0.5
4,588,480	-		GFF4596	0.14	-1.6
4,588,526	+		GFF4596	0.18	-0.5
4,588,534	-		GFF4596	0.18	+1.0
4,588,534	-		GFF4596	0.18	-1.3
4,588,534	-		GFF4596	0.18	-0.2
4,588,548	+		GFF4596	0.20	+0.1
4,588,548	+		GFF4596	0.20	-2.3
4,588,548	+		GFF4596	0.20	-1.2
4,588,548	+		GFF4596	0.20	-0.6
4,588,548	+		GFF4596	0.20	-1.4
4,588,548	+		GFF4596	0.20	+0.2
4,588,548	+		GFF4596	0.20	-1.3
4,588,548	+		GFF4596	0.20	-0.6
4,588,548	+		GFF4596	0.20	+0.3
4,588,548	+		GFF4596	0.20	+0.7
4,588,548	+		GFF4596	0.20	-0.1
4,588,548	+		GFF4596	0.20	+0.2
4,588,548	+		GFF4596	0.20	+1.0
4,588,548	+		GFF4596	0.20	+0.3
4,588,548	+		GFF4596	0.20	-0.6
4,588,548	+		GFF4596	0.20	-1.5
4,588,548	+		GFF4596	0.20	-1.2
4,588,548	+		GFF4596	0.20	+0.2
4,588,548	+		GFF4596	0.20	+0.5
4,588,548	+		GFF4596	0.20	-1.5
4,588,548	+		GFF4596	0.20	-0.3
4,588,548	+		GFF4596	0.20	+0.3
4,588,548	+		GFF4596	0.20	-1.6
4,588,548	+		GFF4596	0.20	-1.7
4,588,548	+		GFF4596	0.20	+0.4
4,588,548	+		GFF4596	0.20	-1.3
4,588,548	+		GFF4596	0.20	-1.8
4,588,548	+		GFF4596	0.20	-0.0
4,588,548	+		GFF4596	0.20	-2.5
4,588,548	+		GFF4596	0.20	-2.7
4,588,556	-		GFF4596	0.20	+0.1
4,588,556	-		GFF4596	0.20	-0.2
4,588,556	-		GFF4596	0.20	-0.6
4,588,556	-		GFF4596	0.20	-1.7
4,588,556	-		GFF4596	0.20	-1.6
4,588,556	-		GFF4596	0.20	-1.6
4,588,556	-		GFF4596	0.20	+0.9
4,588,556	-		GFF4596	0.20	-1.1
4,588,556	-		GFF4596	0.20	-0.3
4,588,556	-		GFF4596	0.20	+0.5
4,588,556	-		GFF4596	0.20	-0.1
4,588,556	-		GFF4596	0.20	+0.6
4,588,556	-		GFF4596	0.20	-2.2
4,588,556	-		GFF4596	0.20	+0.5
4,588,556	-		GFF4596	0.20	-0.4
4,588,556	-		GFF4596	0.20	-0.0
4,588,556	-		GFF4596	0.20	+0.2
4,588,556	-		GFF4596	0.20	-1.1
4,588,556	-		GFF4596	0.20	-0.7
4,588,556	-		GFF4596	0.20	+0.2
4,588,556	-		GFF4596	0.20	-0.6
4,588,556	-		GFF4596	0.20	-0.5
4,588,556	-		GFF4596	0.20	-0.9
4,588,556	-		GFF4596	0.20	-1.6
4,588,556	-		GFF4596	0.20	+0.7
4,588,556	-		GFF4596	0.20	-1.3
4,588,556	-		GFF4596	0.20	+1.1
4,588,556	-		GFF4596	0.20	+0.6
4,588,600	+		GFF4596	0.24	-1.6
4,588,600	+		GFF4596	0.24	+0.2
4,588,604	-		GFF4596	0.24	-2.2
4,588,611	+		GFF4596	0.25	-0.3
4,588,616	+		GFF4596	0.26	-1.8
4,588,616	+		GFF4596	0.26	+0.3
4,588,618	+		GFF4596	0.26	+0.7
4,588,619	-		GFF4596	0.26	-1.9
4,588,633	+		GFF4596	0.27	-0.1
4,588,633	+		GFF4596	0.27	-0.7
4,588,641	-		GFF4596	0.28	+0.2
4,588,641	-		GFF4596	0.28	-0.5
4,588,641	-		GFF4596	0.28	+0.1
4,588,641	-		GFF4596	0.28	-0.2
4,588,641	-		GFF4596	0.28	+0.4
4,588,678	+		GFF4596	0.31	-1.2
4,588,678	+		GFF4596	0.31	+0.1
4,588,686	-		GFF4596	0.32	-0.6
4,588,711	+		GFF4596	0.34	-0.0
4,588,711	+		GFF4596	0.34	-0.6
4,588,726	+		GFF4596	0.35	-0.1
4,588,731	+		GFF4596	0.35	+0.4
4,588,734	-		GFF4596	0.36	-0.5
4,588,739	+		GFF4596	0.36	+1.0
4,588,767	+		GFF4596	0.38	-0.7
4,588,775	-		GFF4596	0.39	+0.0
4,588,775	-		GFF4596	0.39	+1.1
4,588,810	-		GFF4596	0.42	-2.1
4,588,812	+		GFF4596	0.42	-0.9
4,588,820	+		GFF4596	0.43	+0.5
4,588,820	-		GFF4596	0.43	-0.3
4,588,871	+		GFF4596	0.47	-0.0
4,588,915	+		GFF4596	0.51	+0.3
4,588,988	+		GFF4596	0.57	-1.0
4,588,998	-		GFF4596	0.58	+0.8
4,589,011	+		GFF4596	0.59	-0.6
4,589,011	+		GFF4596	0.59	+0.4
4,589,019	-		GFF4596	0.60	-0.5
4,589,019	-		GFF4596	0.60	-1.6
4,589,021	+		GFF4596	0.60	+0.1
4,589,021	+		GFF4596	0.60	+0.3
4,589,021	+		GFF4596	0.60	-0.4
4,589,021	+		GFF4596	0.60	-1.8
4,589,026	+		GFF4596	0.61	-0.2
4,589,026	+		GFF4596	0.61	+0.4
4,589,029	-		GFF4596	0.61	-1.7
4,589,031	+		GFF4596	0.61	-0.7
4,589,053	+		GFF4596	0.63	+0.2
4,589,054	+		GFF4596	0.63	-0.7
4,589,058	-		GFF4596	0.63	+1.2
4,589,061	-		GFF4596	0.64	-1.4
4,589,093	+		GFF4596	0.66	-0.6
4,589,095	+		GFF4596	0.67	-2.2
4,589,106	+		GFF4596	0.68	+0.3
4,589,112	-		GFF4596	0.68	-0.1
4,589,114	-		GFF4596	0.68	-1.2
4,589,122	-		GFF4596	0.69	-1.6
4,589,125	+		GFF4596	0.69	+0.9
4,589,142	+		GFF4596	0.71	-1.5
4,589,146	+		GFF4596	0.71	-0.7
4,589,154	-		GFF4596	0.72	-1.8
4,589,154	-		GFF4596	0.72	-3.2
4,589,167	+		GFF4596	0.73	+0.9
4,589,167	+		GFF4596	0.73	+0.1
4,589,168	-		GFF4596	0.73	-0.8
4,589,175	+		GFF4596	0.74	-0.5
4,589,175	+		GFF4596	0.74	-2.5
4,589,175	-		GFF4596	0.74	+0.1
4,589,183	-		GFF4596	0.74	-2.3
4,589,183	-		GFF4596	0.74	+0.1
4,589,183	-		GFF4596	0.74	+1.0
4,589,183	-		GFF4596	0.74	-0.6
4,589,197	+		GFF4596	0.75	+0.0
4,589,205	-		GFF4596	0.76	-1.6
4,589,205	-		GFF4596	0.76	-0.0
4,589,245	+		GFF4596	0.80	-0.2