Strain Fitness in Sphingobium sp. HT1-2 around GFF4589

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,581,529	+				+0.2
4,581,535	-				-0.8
4,581,561	+				-1.1
4,581,562	-				+0.4
4,581,603	+		GFF4588	0.12	-0.2
4,581,611	-		GFF4588	0.13	-0.8
4,581,612	-		GFF4588	0.13	-1.6
4,581,643	+		GFF4588	0.16	-0.2
4,581,643	+		GFF4588	0.16	-2.0
4,581,643	+		GFF4588	0.16	-0.8
4,581,651	-		GFF4588	0.17	-0.1
4,581,651	-		GFF4588	0.17	-1.2
4,581,651	-		GFF4588	0.17	-0.0
4,581,651	-		GFF4588	0.17	-1.1
4,581,651	-		GFF4588	0.17	-1.9
4,581,653	+		GFF4588	0.17	+0.1
4,581,661	-		GFF4588	0.18	+0.1
4,581,661	-		GFF4588	0.18	-1.1
4,581,661	-		GFF4588	0.18	+0.1
4,581,697	-		GFF4588	0.22	-0.8
4,581,702	+		GFF4588	0.23	-0.7
4,581,702	+		GFF4588	0.23	-0.3
4,581,709	+		GFF4588	0.24	+0.4
4,581,710	-		GFF4588	0.24	+0.4
4,581,710	-		GFF4588	0.24	-0.1
4,581,710	-		GFF4588	0.24	+1.1
4,581,717	+		GFF4588	0.25	-0.0
4,581,717	+		GFF4588	0.25	+0.1
4,581,717	-		GFF4588	0.25	-1.5
4,581,728	+		GFF4588	0.26	-0.6
4,581,728	+		GFF4588	0.26	-2.2
4,581,733	+		GFF4588	0.27	-1.5
4,581,741	-		GFF4588	0.28	-2.2
4,581,741	-		GFF4588	0.28	-1.2
4,581,745	+		GFF4588	0.28	+2.1
4,581,750	+		GFF4588	0.29	-2.0
4,581,753	-		GFF4588	0.29	-0.2
4,581,758	-		GFF4588	0.29	-0.8
4,581,789	-		GFF4588	0.33	+0.5
4,581,801	+		GFF4588	0.34	-2.9
4,581,809	-		GFF4588	0.35	-0.5
4,581,809	-		GFF4588	0.35	+0.1
4,581,809	-		GFF4588	0.35	-0.3
4,581,809	-		GFF4588	0.35	-0.8
4,581,809	-		GFF4588	0.35	-0.5
4,581,809	-		GFF4588	0.35	+1.7
4,581,817	+		GFF4588	0.36	-1.4
4,581,820	-		GFF4588	0.37	-0.3
4,581,863	-		GFF4588	0.41	+1.5
4,581,869	+		GFF4588	0.42	-0.7
4,581,869	+		GFF4588	0.42	+0.7
4,581,878	-		GFF4588	0.43	-0.5
4,581,897	-		GFF4588	0.45	-0.6
4,581,939	-		GFF4588	0.50	-0.0
4,581,943	+		GFF4588	0.51	-2.6
4,581,952	-		GFF4588	0.52	-1.8
4,581,955	+		GFF4588	0.52	+0.3
4,581,966	+		GFF4588	0.53	-0.4
4,581,974	-		GFF4588	0.54	-0.1
4,581,974	-		GFF4588	0.54	-0.9
4,581,983	+		GFF4588	0.55	-1.3
4,581,991	+		GFF4588	0.56	+0.7
4,581,991	+		GFF4588	0.56	+0.2
4,581,991	+		GFF4588	0.56	-0.4
4,581,991	+		GFF4588	0.56	+0.3
4,581,991	+		GFF4588	0.56	+0.7
4,581,999	+		GFF4588	0.57	-1.5
4,581,999	+		GFF4588	0.57	-0.6
4,581,999	+		GFF4588	0.57	-1.5
4,581,999	-		GFF4588	0.57	-0.5
4,581,999	-		GFF4588	0.57	-1.2
4,581,999	-		GFF4588	0.57	+0.3
4,582,001	+		GFF4588	0.57	-0.0
4,582,001	+		GFF4588	0.57	-1.5
4,582,001	+		GFF4588	0.57	-0.1
4,582,009	-		GFF4588	0.58	-0.2
4,582,009	-		GFF4588	0.58	-0.5
4,582,009	-		GFF4588	0.58	-1.3
4,582,015	+		GFF4588	0.59	+0.4
4,582,032	-		GFF4588	0.61	+0.6
4,582,032	-		GFF4588	0.61	-0.5
4,582,038	-		GFF4588	0.61	-0.5
4,582,045	+		GFF4588	0.62	+0.9
4,582,045	+		GFF4588	0.62	-1.0
4,582,046	+		GFF4588	0.62	-0.2
4,582,046	+		GFF4588	0.62	+0.1
4,582,051	+		GFF4588	0.63	-1.5
4,582,051	+		GFF4588	0.63	-1.3
4,582,051	+		GFF4588	0.63	-2.1
4,582,051	+		GFF4588	0.63	-0.8
4,582,051	+		GFF4588	0.63	-2.0
4,582,053	-		GFF4588	0.63	-0.7
4,582,054	-		GFF4588	0.63	-0.3
4,582,056	+		GFF4588	0.63	-0.1
4,582,059	-		GFF4588	0.64	-2.3
4,582,059	-		GFF4588	0.64	+1.0
4,582,059	-		GFF4588	0.64	-2.5
4,582,064	-		GFF4588	0.64	-0.2
4,582,066	+		GFF4588	0.65	+0.2
4,582,066	+		GFF4588	0.65	+0.8
4,582,066	+		GFF4588	0.65	-0.7
4,582,074	-		GFF4588	0.66	+0.3
4,582,074	-		GFF4588	0.66	+0.3
4,582,079	+		GFF4588	0.66	-0.7
4,582,084	+		GFF4588	0.67	+0.1
4,582,087	-		GFF4588	0.67	-0.3
4,582,087	-		GFF4588	0.67	-2.5
4,582,087	-		GFF4588	0.67	+0.6
4,582,092	-		GFF4588	0.68	-0.6
4,582,092	-		GFF4588	0.68	-0.1
4,582,092	-		GFF4588	0.68	-1.4
4,582,121	+		GFF4588	0.71	+1.1
4,582,121	+		GFF4588	0.71	-0.1
4,582,121	+		GFF4588	0.71	+0.2
4,582,126	+		GFF4588	0.71	+1.1
4,582,134	-		GFF4588	0.72	-1.3
4,582,134	-		GFF4588	0.72	-1.4
4,582,135	+		GFF4588	0.72	-1.1
4,582,144	-		GFF4588	0.74	-0.1
4,582,157	-		GFF4588	0.75	-0.2
4,582,157	-		GFF4588	0.75	-0.2
4,582,168	-		GFF4588	0.76	-0.6
4,582,170	+		GFF4588	0.76	-1.5
4,582,170	+		GFF4588	0.76	-1.3
4,582,171	+		GFF4588	0.77	-0.3
4,582,174	-		GFF4588	0.77	-0.7
4,582,174	-		GFF4588	0.77	-0.2
4,582,176	-		GFF4588	0.77	-0.0
4,582,178	-		GFF4588	0.77	-0.3
4,582,190	+		GFF4588	0.79	-0.2
4,582,215	-		GFF4588	0.82	-0.3
4,582,219	+		GFF4588	0.82	-1.5
4,582,230	+		GFF4588	0.83	-1.0
4,582,230	+		GFF4588	0.83	+0.7
4,582,234	+		GFF4588	0.84	-1.0
4,582,235	+		GFF4588	0.84	-2.1
4,582,235	+		GFF4588	0.84	-0.6
4,582,237	-		GFF4588	0.84	-0.9
4,582,238	-		GFF4588	0.84	-0.8
4,582,239	+		GFF4588	0.84	-0.2
4,582,242	-		GFF4588	0.85	-0.4
4,582,242	-		GFF4588	0.85	-1.3
4,582,248	+		GFF4588	0.85	-1.8
4,582,260	-		GFF4588	0.87	-1.3
4,582,262	+		GFF4588	0.87	+0.6
4,582,268	-		GFF4588	0.88	-1.8
4,582,271	-		GFF4588	0.88	-1.1
4,582,276	+		GFF4588	0.89	-0.6
4,582,285	+		GFF4588	0.90	+0.5
4,582,288	+				-0.8
4,582,288	+				-1.7
4,582,288	+				-0.8
4,582,288	+				-0.6
4,582,288	+				+0.6
4,582,288	+				+0.0
4,582,288	+				-1.0
4,582,288	+				-0.4
4,582,296	-				-0.4
4,582,296	-				+0.8
4,582,296	-				-0.8
4,582,296	-				-0.7
4,582,308	+				-0.1
4,582,324	+				-0.2
4,582,325	+				-1.2
4,582,333	-				-0.3
4,582,333	-				-0.5
4,582,335	+				+0.9
4,582,335	+				-0.1
4,582,335	+				-1.5
4,582,338	-				-0.3
4,582,345	+				-1.5
4,582,350	+				+0.4
4,582,353	-				+0.3
4,582,365	-				-0.5
4,582,369	+				+0.4
4,582,369	+				-0.3
4,582,375	+				-0.8
4,582,375	+				-1.6
4,582,375	+				+0.2
4,582,375	+				-0.9
4,582,377	-				-0.0
4,582,377	-				+0.7
4,582,383	+				+0.2
4,582,390	+				+0.1
4,582,390	+				-0.8
4,582,398	-				-0.2
4,582,410	+				-2.3
4,582,410	+				-0.7
4,582,410	+				-0.8
4,582,410	+				-0.2
4,582,410	+				+0.1
4,582,410	+				-0.1
4,582,410	+				+0.3
4,582,410	+				-1.5
4,582,410	+				+0.3
4,582,410	+				-0.0
4,582,410	+				-0.3
4,582,410	+				-1.0
4,582,410	+				+1.3
4,582,410	+				-0.1
4,582,410	+				-0.8
4,582,410	+				-0.8
4,582,410	+				-1.0
4,582,411	-				-0.7
4,582,412	+				+0.9
4,582,412	+				-1.7
4,582,412	+				-0.0
4,582,412	+				+0.4
4,582,412	+				-2.6
4,582,412	-				+0.4
4,582,414	+				+0.3
4,582,418	-				-1.0
4,582,418	-				-0.9
4,582,418	-				-0.0
4,582,418	-				+0.1
4,582,418	-				+0.3
4,582,418	-				+1.1
4,582,420	-				+0.0
4,582,420	-				-0.8
4,582,420	-				+0.6
4,582,430	-				+0.3
4,582,472	+				+0.8
4,582,477	+				-2.0
4,582,477	+				-0.6
4,582,477	+				-1.5
4,582,477	+				-0.7
4,582,477	+				+0.2
4,582,483	-				-0.2
4,582,485	-				-0.4
4,582,512	+				-0.3
4,582,519	-				-1.9
4,582,521	-				-0.5
4,582,526	-				-0.8
4,582,528	+				-1.2
4,582,559	+				-1.5
4,582,563	-				+1.8
4,582,569	+				-0.1
4,582,572	-				-0.1
4,582,577	-				+0.2
4,582,596	-		GFF4589	0.12	-0.2
4,582,607	-		GFF4589	0.14	+0.6
4,582,611	-		GFF4589	0.14	-1.8
4,582,616	+		GFF4589	0.15	-0.0
4,582,636	-		GFF4589	0.18	-0.2
4,582,655	+		GFF4589	0.21	-0.5
4,582,663	+		GFF4589	0.23	+0.0
4,582,663	-		GFF4589	0.23	+1.2
4,582,663	-		GFF4589	0.23	-1.0
4,582,663	-		GFF4589	0.23	-0.6
4,582,670	-		GFF4589	0.24	-1.1
4,582,671	-		GFF4589	0.24	+0.4
4,582,683	+		GFF4589	0.26	-1.0
4,582,683	+		GFF4589	0.26	+0.5
4,582,683	+		GFF4589	0.26	-1.0
4,582,691	-		GFF4589	0.27	+0.3
4,582,691	-		GFF4589	0.27	+0.7
4,582,691	-		GFF4589	0.27	+0.3
4,582,691	-		GFF4589	0.27	+0.6
4,582,693	+		GFF4589	0.28	+0.6
4,582,693	+		GFF4589	0.28	-0.6
4,582,693	+		GFF4589	0.28	-1.2
4,582,693	+		GFF4589	0.28	-0.7
4,582,693	+		GFF4589	0.28	-0.4
4,582,693	+		GFF4589	0.28	-1.5
4,582,693	+		GFF4589	0.28	-1.6
4,582,693	+		GFF4589	0.28	-0.0
4,582,693	-		GFF4589	0.28	+0.7
4,582,693	-		GFF4589	0.28	-0.8
4,582,693	-		GFF4589	0.28	-0.5
4,582,701	-		GFF4589	0.29	-3.1
4,582,701	-		GFF4589	0.29	+0.3
4,582,701	-		GFF4589	0.29	-1.6
4,582,701	-		GFF4589	0.29	-2.3
4,582,701	-		GFF4589	0.29	+1.2
4,582,708	-		GFF4589	0.30	-1.0
4,582,719	-		GFF4589	0.32	-0.5
4,582,719	-		GFF4589	0.32	+0.8
4,582,719	-		GFF4589	0.32	-0.2
4,582,724	+		GFF4589	0.33	+1.2
4,582,724	-		GFF4589	0.33	+1.2
4,582,729	+		GFF4589	0.33	+0.5
4,582,732	-		GFF4589	0.34	-2.6
4,582,732	-		GFF4589	0.34	+0.1
4,582,737	-		GFF4589	0.35	-2.6
4,582,762	-		GFF4589	0.39	-0.1
4,582,764	+		GFF4589	0.39	-0.1
4,582,764	+		GFF4589	0.39	+0.3
4,582,764	+		GFF4589	0.39	-1.7
4,582,772	-		GFF4589	0.40	-1.1
4,582,772	-		GFF4589	0.40	+0.1
4,582,772	-		GFF4589	0.40	-0.3
4,582,772	-		GFF4589	0.40	-0.2
4,582,772	-		GFF4589	0.40	-0.4
4,582,772	-		GFF4589	0.40	-1.4
4,582,791	-		GFF4589	0.43	+1.6
4,582,791	-		GFF4589	0.43	-0.1
4,582,826	-		GFF4589	0.49	+0.8
4,582,835	-		GFF4589	0.50	+0.2
4,582,849	+		GFF4589	0.53	+0.4
4,582,849	+		GFF4589	0.53	-3.1
4,582,851	+		GFF4589	0.53	+1.0
4,582,864	+		GFF4589	0.55	+0.5
4,582,867	-		GFF4589	0.55	-0.5
4,582,867	-		GFF4589	0.55	+0.1
4,582,869	+		GFF4589	0.56	-0.3
4,582,869	+		GFF4589	0.56	-0.1
4,582,877	-		GFF4589	0.57	-0.5
4,582,898	+		GFF4589	0.60	-0.8
4,582,903	-		GFF4589	0.61	-1.9
4,582,932	+		GFF4589	0.66	-1.3
4,582,934	-		GFF4589	0.66	-0.1
4,582,944	-		GFF4589	0.68	-0.0
4,582,953	+		GFF4589	0.69	-0.3
4,582,967	+		GFF4589	0.71	-1.0
4,582,970	-		GFF4589	0.72	-0.3
4,582,985	-		GFF4589	0.74	-0.2
4,582,991	+		GFF4589	0.75	-1.3
4,582,995	-		GFF4589	0.76	-0.2
4,582,999	-		GFF4589	0.77	-0.2
4,582,999	-		GFF4589	0.77	+0.3
4,582,999	-		GFF4589	0.77	+0.1
4,582,999	-		GFF4589	0.77	-0.3
4,583,004	-		GFF4589	0.77	+0.4
4,583,007	-		GFF4589	0.78	-1.2
4,583,021	+		GFF4589	0.80	+0.3
4,583,026	+		GFF4589	0.81	-1.3
4,583,027	+		GFF4589	0.81	-0.5
4,583,027	+		GFF4589	0.81	-0.8
4,583,027	+		GFF4589	0.81	-2.4
4,583,034	-		GFF4589	0.82	-1.8
4,583,035	-		GFF4589	0.82	-0.5
4,583,035	-		GFF4589	0.82	-0.9
4,583,035	-		GFF4589	0.82	-0.5
4,583,036	-		GFF4589	0.83	-0.2
4,583,037	+		GFF4589	0.83	-0.3
4,583,037	+		GFF4589	0.83	-0.4
4,583,037	+		GFF4589	0.83	-1.3
4,583,045	-		GFF4589	0.84	+0.0
4,583,055	-		GFF4589	0.86	-0.3
4,583,087	+				+0.5
4,583,095	-				-2.3
4,583,095	-				-1.0
4,583,095	-				-0.7
4,583,096	+				+0.2
4,583,115	+				+1.3
4,583,115	+				-2.5
4,583,115	-				-1.7
4,583,115	-				-3.2
4,583,123	-				-1.1
4,583,152	+				+1.1
4,583,152	+				-0.4
4,583,160	-				-0.7
4,583,167	+				-0.6
4,583,185	+				-1.1
4,583,185	+				-0.6
4,583,185	+				-0.8
4,583,193	-				+0.9
4,583,193	-				-1.1
4,583,194	+				+0.6
4,583,194	+				-1.4
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4,583,194	+				+0.2
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4,583,194	+				-0.9
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4,583,286	+				+0.2
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4,583,294	-				-2.5
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4,583,301	+				-1.8
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4,583,715	-		GFF4590	0.54	-1.7
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4,583,720	-		GFF4590	0.55	-2.2
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4,583,764	-		GFF4590	0.60	-0.3
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4,583,788	-		GFF4590	0.63	+0.0
4,583,813	+		GFF4590	0.66	+0.7
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4,583,821	-		GFF4590	0.67	-2.6
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4,584,051	+				+0.8