Strain Fitness in Sphingobium sp. HT1-2 around GFF4588

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,580,508	+		GFF4586	0.82	-0.4
4,580,511	-		GFF4586	0.82	-1.0
4,580,523	+		GFF4586	0.83	-1.9
4,580,523	+		GFF4586	0.83	+0.0
4,580,531	-		GFF4586	0.83	-1.3
4,580,531	-		GFF4586	0.83	-1.1
4,580,531	-		GFF4586	0.83	-2.1
4,580,532	-		GFF4586	0.83	-0.7
4,580,541	-		GFF4586	0.83	+1.3
4,580,541	-		GFF4586	0.83	-1.2
4,580,557	+		GFF4586	0.84	-0.8
4,580,558	+		GFF4586	0.84	-0.6
4,580,558	-		GFF4586	0.84	-0.1
4,580,569	+		GFF4586	0.85	-0.4
4,580,569	+		GFF4586	0.85	+0.4
4,580,570	-		GFF4586	0.85	-0.1
4,580,576	-		GFF4586	0.85	+0.3
4,580,576	-		GFF4586	0.85	+0.7
4,580,576	-		GFF4586	0.85	+0.6
4,580,576	-		GFF4586	0.85	+0.0
4,580,576	-		GFF4586	0.85	-0.8
4,580,577	-		GFF4586	0.85	+0.8
4,580,577	-		GFF4586	0.85	-0.7
4,580,623	+		GFF4586	0.87	+0.1
4,580,623	+		GFF4586	0.87	-0.2
4,580,626	-		GFF4586	0.87	-0.9
4,580,641	+		GFF4586	0.87	+0.6
4,580,649	-		GFF4586	0.88	-1.4
4,580,669	-		GFF4586	0.89	+0.5
4,580,684	+		GFF4586	0.89	-0.2
4,580,684	+		GFF4586	0.89	+0.5
4,580,684	+		GFF4586	0.89	-0.5
4,580,684	+		GFF4586	0.89	-0.1
4,580,684	+		GFF4586	0.89	+0.5
4,580,684	+		GFF4586	0.89	-0.5
4,580,684	+		GFF4586	0.89	-0.6
4,580,692	-		GFF4586	0.90	-0.4
4,580,692	-		GFF4586	0.90	-1.0
4,580,692	-		GFF4586	0.90	-0.3
4,580,692	-		GFF4586	0.90	-0.4
4,580,692	-		GFF4586	0.90	+0.7
4,580,700	+		GFF4586	0.90	-0.1
4,580,719	-				-0.3
4,580,740	+				+0.7
4,580,771	-				-1.2
4,580,797	-				-1.4
4,580,805	-				+0.3
4,580,805	-				-0.6
4,580,807	+				-1.0
4,580,815	-				+1.3
4,580,843	+				-0.8
4,580,855	+				-0.4
4,580,856	+				-0.0
4,580,873	+				+0.0
4,580,874	-				-2.5
4,580,875	+				+1.0
4,580,884	+				+0.2
4,580,884	+				-0.2
4,580,884	+				-0.1
4,580,884	+				+0.3
4,580,895	+				-0.9
4,580,920	-				-0.9
4,580,937	-				+0.8
4,580,940	+				-0.3
4,580,946	+				-1.5
4,580,948	+				-0.3
4,580,948	-				+0.5
4,580,956	+				-1.3
4,580,964	-				-2.0
4,580,964	-				-1.8
4,580,964	-				-0.0
4,580,964	-				+0.1
4,581,030	-				-0.9
4,581,033	-				+0.7
4,581,041	+				-0.2
4,581,049	+				-0.7
4,581,051	+				-0.7
4,581,056	+				-0.2
4,581,057	-				+0.2
4,581,066	-				+0.4
4,581,069	+				-0.7
4,581,071	+				-0.7
4,581,077	-				-0.3
4,581,079	+				-0.9
4,581,083	+				+0.5
4,581,096	-				-0.2
4,581,105	-		GFF4587	0.10	-0.5
4,581,106	+		GFF4587	0.10	+0.4
4,581,114	+		GFF4587	0.12	-0.3
4,581,114	+		GFF4587	0.12	-1.8
4,581,123	-		GFF4587	0.15	+0.2
4,581,123	-		GFF4587	0.15	-0.1
4,581,131	-		GFF4587	0.17	-0.7
4,581,139	+		GFF4587	0.19	-1.3
4,581,140	+		GFF4587	0.19	-2.1
4,581,150	+		GFF4587	0.22	-0.6
4,581,158	-		GFF4587	0.24	-0.8
4,581,160	+		GFF4587	0.24	+0.8
4,581,164	+		GFF4587	0.25	+1.0
4,581,166	-		GFF4587	0.26	-0.1
4,581,174	+		GFF4587	0.28	-0.2
4,581,177	-		GFF4587	0.29	-0.3
4,581,182	-		GFF4587	0.30	-1.3
4,581,190	-		GFF4587	0.32	-0.3
4,581,209	+		GFF4587	0.37	-0.2
4,581,209	+		GFF4587	0.37	-0.1
4,581,209	+		GFF4587	0.37	-1.6
4,581,209	+		GFF4587	0.37	+0.2
4,581,209	+		GFF4587	0.37	-1.3
4,581,217	-		GFF4587	0.39	-0.1
4,581,217	-		GFF4587	0.39	-0.1
4,581,217	-		GFF4587	0.39	+0.7
4,581,217	-		GFF4587	0.39	+0.7
4,581,217	-		GFF4587	0.39	+0.3
4,581,221	+		GFF4587	0.40	-0.4
4,581,233	+		GFF4587	0.44	-0.7
4,581,253	+		GFF4587	0.49	-2.3
4,581,254	+		GFF4587	0.49	-2.5
4,581,254	+		GFF4587	0.49	-1.3
4,581,262	-		GFF4587	0.51	+0.9
4,581,272	+		GFF4587	0.54	-0.8
4,581,272	+		GFF4587	0.54	-0.2
4,581,310	+		GFF4587	0.64	-0.3
4,581,320	-		GFF4587	0.66	-0.7
4,581,320	-		GFF4587	0.66	-2.0
4,581,339	+		GFF4587	0.71	-1.7
4,581,353	-		GFF4587	0.75	-0.8
4,581,397	+		GFF4587	0.87	-2.8
4,581,407	+		GFF4587	0.89	-1.6
4,581,413	-				-1.8
4,581,421	-				-1.0
4,581,461	+				-0.5
4,581,462	-				+0.1
4,581,469	+				-2.0
4,581,469	-				-0.3
4,581,469	-				-0.5
4,581,474	-				+0.1
4,581,479	-				-1.9
4,581,487	+				-0.6
4,581,490	-				+0.3
4,581,493	-				-2.8
4,581,493	-				+0.0
4,581,495	-				-0.9
4,581,495	-				+0.4
4,581,513	-				-1.4
4,581,529	+				+0.2
4,581,535	-				-0.8
4,581,561	+				-1.1
4,581,562	-				+0.4
4,581,603	+		GFF4588	0.12	-0.2
4,581,611	-		GFF4588	0.13	-0.8
4,581,612	-		GFF4588	0.13	-1.6
4,581,643	+		GFF4588	0.16	-0.2
4,581,643	+		GFF4588	0.16	-2.0
4,581,643	+		GFF4588	0.16	-0.8
4,581,651	-		GFF4588	0.17	-0.1
4,581,651	-		GFF4588	0.17	-1.2
4,581,651	-		GFF4588	0.17	-0.0
4,581,651	-		GFF4588	0.17	-1.1
4,581,651	-		GFF4588	0.17	-1.9
4,581,653	+		GFF4588	0.17	+0.1
4,581,661	-		GFF4588	0.18	+0.1
4,581,661	-		GFF4588	0.18	-1.1
4,581,661	-		GFF4588	0.18	+0.1
4,581,697	-		GFF4588	0.22	-0.8
4,581,702	+		GFF4588	0.23	-0.7
4,581,702	+		GFF4588	0.23	-0.3
4,581,709	+		GFF4588	0.24	+0.4
4,581,710	-		GFF4588	0.24	+0.4
4,581,710	-		GFF4588	0.24	-0.1
4,581,710	-		GFF4588	0.24	+1.1
4,581,717	+		GFF4588	0.25	-0.0
4,581,717	+		GFF4588	0.25	+0.1
4,581,717	-		GFF4588	0.25	-1.5
4,581,728	+		GFF4588	0.26	-0.6
4,581,728	+		GFF4588	0.26	-2.2
4,581,733	+		GFF4588	0.27	-1.5
4,581,741	-		GFF4588	0.28	-2.2
4,581,741	-		GFF4588	0.28	-1.2
4,581,745	+		GFF4588	0.28	+2.1
4,581,750	+		GFF4588	0.29	-2.0
4,581,753	-		GFF4588	0.29	-0.2
4,581,758	-		GFF4588	0.29	-0.8
4,581,789	-		GFF4588	0.33	+0.5
4,581,801	+		GFF4588	0.34	-2.9
4,581,809	-		GFF4588	0.35	-0.5
4,581,809	-		GFF4588	0.35	+0.1
4,581,809	-		GFF4588	0.35	-0.3
4,581,809	-		GFF4588	0.35	-0.8
4,581,809	-		GFF4588	0.35	-0.5
4,581,809	-		GFF4588	0.35	+1.7
4,581,817	+		GFF4588	0.36	-1.4
4,581,820	-		GFF4588	0.37	-0.3
4,581,863	-		GFF4588	0.41	+1.5
4,581,869	+		GFF4588	0.42	-0.7
4,581,869	+		GFF4588	0.42	+0.7
4,581,878	-		GFF4588	0.43	-0.5
4,581,897	-		GFF4588	0.45	-0.6
4,581,939	-		GFF4588	0.50	-0.0
4,581,943	+		GFF4588	0.51	-2.6
4,581,952	-		GFF4588	0.52	-1.8
4,581,955	+		GFF4588	0.52	+0.3
4,581,966	+		GFF4588	0.53	-0.4
4,581,974	-		GFF4588	0.54	-0.1
4,581,974	-		GFF4588	0.54	-0.9
4,581,983	+		GFF4588	0.55	-1.3
4,581,991	+		GFF4588	0.56	+0.7
4,581,991	+		GFF4588	0.56	+0.2
4,581,991	+		GFF4588	0.56	-0.4
4,581,991	+		GFF4588	0.56	+0.3
4,581,991	+		GFF4588	0.56	+0.7
4,581,999	+		GFF4588	0.57	-1.5
4,581,999	+		GFF4588	0.57	-0.6
4,581,999	+		GFF4588	0.57	-1.5
4,581,999	-		GFF4588	0.57	-0.5
4,581,999	-		GFF4588	0.57	-1.2
4,581,999	-		GFF4588	0.57	+0.3
4,582,001	+		GFF4588	0.57	-0.0
4,582,001	+		GFF4588	0.57	-1.5
4,582,001	+		GFF4588	0.57	-0.1
4,582,009	-		GFF4588	0.58	-0.2
4,582,009	-		GFF4588	0.58	-0.5
4,582,009	-		GFF4588	0.58	-1.3
4,582,015	+		GFF4588	0.59	+0.4
4,582,032	-		GFF4588	0.61	+0.6
4,582,032	-		GFF4588	0.61	-0.5
4,582,038	-		GFF4588	0.61	-0.5
4,582,045	+		GFF4588	0.62	+0.9
4,582,045	+		GFF4588	0.62	-1.0
4,582,046	+		GFF4588	0.62	-0.2
4,582,046	+		GFF4588	0.62	+0.1
4,582,051	+		GFF4588	0.63	-1.5
4,582,051	+		GFF4588	0.63	-1.3
4,582,051	+		GFF4588	0.63	-2.1
4,582,051	+		GFF4588	0.63	-0.8
4,582,051	+		GFF4588	0.63	-2.0
4,582,053	-		GFF4588	0.63	-0.7
4,582,054	-		GFF4588	0.63	-0.3
4,582,056	+		GFF4588	0.63	-0.1
4,582,059	-		GFF4588	0.64	-2.3
4,582,059	-		GFF4588	0.64	+1.0
4,582,059	-		GFF4588	0.64	-2.5
4,582,064	-		GFF4588	0.64	-0.2
4,582,066	+		GFF4588	0.65	+0.2
4,582,066	+		GFF4588	0.65	+0.8
4,582,066	+		GFF4588	0.65	-0.7
4,582,074	-		GFF4588	0.66	+0.3
4,582,074	-		GFF4588	0.66	+0.3
4,582,079	+		GFF4588	0.66	-0.7
4,582,084	+		GFF4588	0.67	+0.1
4,582,087	-		GFF4588	0.67	-0.3
4,582,087	-		GFF4588	0.67	-2.5
4,582,087	-		GFF4588	0.67	+0.6
4,582,092	-		GFF4588	0.68	-0.6
4,582,092	-		GFF4588	0.68	-0.1
4,582,092	-		GFF4588	0.68	-1.4
4,582,121	+		GFF4588	0.71	+1.1
4,582,121	+		GFF4588	0.71	-0.1
4,582,121	+		GFF4588	0.71	+0.2
4,582,126	+		GFF4588	0.71	+1.1
4,582,134	-		GFF4588	0.72	-1.3
4,582,134	-		GFF4588	0.72	-1.4
4,582,135	+		GFF4588	0.72	-1.1
4,582,144	-		GFF4588	0.74	-0.1
4,582,157	-		GFF4588	0.75	-0.2
4,582,157	-		GFF4588	0.75	-0.2
4,582,168	-		GFF4588	0.76	-0.6
4,582,170	+		GFF4588	0.76	-1.5
4,582,170	+		GFF4588	0.76	-1.3
4,582,171	+		GFF4588	0.77	-0.3
4,582,174	-		GFF4588	0.77	-0.7
4,582,174	-		GFF4588	0.77	-0.2
4,582,176	-		GFF4588	0.77	-0.0
4,582,178	-		GFF4588	0.77	-0.3
4,582,190	+		GFF4588	0.79	-0.2
4,582,215	-		GFF4588	0.82	-0.3
4,582,219	+		GFF4588	0.82	-1.5
4,582,230	+		GFF4588	0.83	-1.0
4,582,230	+		GFF4588	0.83	+0.7
4,582,234	+		GFF4588	0.84	-1.0
4,582,235	+		GFF4588	0.84	-2.1
4,582,235	+		GFF4588	0.84	-0.6
4,582,237	-		GFF4588	0.84	-0.9
4,582,238	-		GFF4588	0.84	-0.8
4,582,239	+		GFF4588	0.84	-0.2
4,582,242	-		GFF4588	0.85	-0.4
4,582,242	-		GFF4588	0.85	-1.3
4,582,248	+		GFF4588	0.85	-1.8
4,582,260	-		GFF4588	0.87	-1.3
4,582,262	+		GFF4588	0.87	+0.6
4,582,268	-		GFF4588	0.88	-1.8
4,582,271	-		GFF4588	0.88	-1.1
4,582,276	+		GFF4588	0.89	-0.6
4,582,285	+		GFF4588	0.90	+0.5
4,582,288	+				-0.8
4,582,288	+				-1.7
4,582,288	+				-0.8
4,582,288	+				-0.6
4,582,288	+				+0.6
4,582,288	+				+0.0
4,582,288	+				-1.0
4,582,288	+				-0.4
4,582,296	-				-0.4
4,582,296	-				+0.8
4,582,296	-				-0.8
4,582,296	-				-0.7
4,582,308	+				-0.1
4,582,324	+				-0.2
4,582,325	+				-1.2
4,582,333	-				-0.3
4,582,333	-				-0.5
4,582,335	+				+0.9
4,582,335	+				-0.1
4,582,335	+				-1.5
4,582,338	-				-0.3
4,582,345	+				-1.5
4,582,350	+				+0.4
4,582,353	-				+0.3
4,582,365	-				-0.5
4,582,369	+				+0.4
4,582,369	+				-0.3
4,582,375	+				-0.8
4,582,375	+				-1.6
4,582,375	+				+0.2
4,582,375	+				-0.9
4,582,377	-				-0.0
4,582,377	-				+0.7
4,582,383	+				+0.2
4,582,390	+				+0.1
4,582,390	+				-0.8
4,582,398	-				-0.2
4,582,410	+				-2.3
4,582,410	+				-0.7
4,582,410	+				-0.8
4,582,410	+				-0.2
4,582,410	+				+0.1
4,582,410	+				-0.1
4,582,410	+				+0.3
4,582,410	+				-1.5
4,582,410	+				+0.3
4,582,410	+				-0.0
4,582,410	+				-0.3
4,582,410	+				-1.0
4,582,410	+				+1.3
4,582,410	+				-0.1
4,582,410	+				-0.8
4,582,410	+				-0.8
4,582,410	+				-1.0
4,582,411	-				-0.7
4,582,412	+				+0.9
4,582,412	+				-1.7
4,582,412	+				-0.0
4,582,412	+				+0.4
4,582,412	+				-2.6
4,582,412	-				+0.4
4,582,414	+				+0.3
4,582,418	-				-1.0
4,582,418	-				-0.9
4,582,418	-				-0.0
4,582,418	-				+0.1
4,582,418	-				+0.3
4,582,418	-				+1.1
4,582,420	-				+0.0
4,582,420	-				-0.8
4,582,420	-				+0.6
4,582,430	-				+0.3
4,582,472	+				+0.8
4,582,477	+				-2.0
4,582,477	+				-0.6
4,582,477	+				-1.5
4,582,477	+				-0.7
4,582,477	+				+0.2
4,582,483	-				-0.2
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4,582,519	-				-1.9
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4,582,559	+				-1.5
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4,582,701	-		GFF4589	0.29	-2.3
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4,582,708	-		GFF4589	0.30	-1.0
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4,582,729	+		GFF4589	0.33	+0.5
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4,582,764	+		GFF4589	0.39	-0.1
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4,582,764	+		GFF4589	0.39	-1.7
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4,582,772	-		GFF4589	0.40	-1.4
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4,582,791	-		GFF4589	0.43	-0.1
4,582,826	-		GFF4589	0.49	+0.8
4,582,835	-		GFF4589	0.50	+0.2
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4,582,849	+		GFF4589	0.53	-3.1
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4,582,867	-		GFF4589	0.55	+0.1
4,582,869	+		GFF4589	0.56	-0.3
4,582,869	+		GFF4589	0.56	-0.1
4,582,877	-		GFF4589	0.57	-0.5
4,582,898	+		GFF4589	0.60	-0.8
4,582,903	-		GFF4589	0.61	-1.9
4,582,932	+		GFF4589	0.66	-1.3
4,582,934	-		GFF4589	0.66	-0.1
4,582,944	-		GFF4589	0.68	-0.0
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4,582,985	-		GFF4589	0.74	-0.2
4,582,991	+		GFF4589	0.75	-1.3
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4,582,999	-		GFF4589	0.77	+0.1
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4,583,034	-		GFF4589	0.82	-1.8
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4,583,037	+		GFF4589	0.83	-1.3
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4,583,095	-				-1.0
4,583,095	-				-0.7
4,583,096	+				+0.2
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4,583,115	-				-1.7
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4,583,185	+				-0.8
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4,583,193	-				-1.1
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4,583,194	+				-1.4
4,583,194	+				+0.3
4,583,194	+				-1.5
4,583,194	+				+0.2
4,583,194	+				-0.0
4,583,194	+				-0.9
4,583,202	-				-0.8
4,583,209	+				+0.0
4,583,220	+				-0.0
4,583,233	+				+0.6
4,583,241	-				-0.1
4,583,245	+				+0.8
4,583,247	-				+0.5
4,583,286	+				-0.1
4,583,286	+				+0.4
4,583,286	+				+0.2
4,583,294	-				-2.5
4,583,294	-				-2.5
4,583,300	+				-1.0
4,583,301	+				-1.8
4,583,309	-				+1.1
4,583,310	-				+1.0
4,583,317	-				+0.5
4,583,357	+		GFF4590	0.13	-0.3