Strain Fitness in Sphingobium sp. HT1-2 around GFF4577

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,567,791	-				+0.1
4,567,791	-				-0.4
4,567,825	-				-0.5
4,567,857	+		GFF4576	0.13	+0.1
4,567,865	-		GFF4576	0.14	-2.5
4,567,865	-		GFF4576	0.14	-2.2
4,567,892	+		GFF4576	0.16	-0.7
4,567,892	+		GFF4576	0.16	-0.0
4,567,892	+		GFF4576	0.16	-0.6
4,567,900	-		GFF4576	0.17	+0.6
4,567,900	-		GFF4576	0.17	+0.7
4,567,900	-		GFF4576	0.17	-0.3
4,567,907	+		GFF4576	0.18	-0.9
4,567,923	+		GFF4576	0.19	+1.9
4,567,923	+		GFF4576	0.19	+1.7
4,567,931	-		GFF4576	0.20	+0.4
4,567,944	-		GFF4576	0.21	-0.2
4,567,946	+		GFF4576	0.22	-0.9
4,567,946	+		GFF4576	0.22	+0.3
4,567,949	-		GFF4576	0.22	-1.2
4,567,952	+		GFF4576	0.22	+1.1
4,567,953	+		GFF4576	0.22	+0.6
4,567,954	-		GFF4576	0.22	-0.9
4,567,958	+		GFF4576	0.23	+1.5
4,567,961	-		GFF4576	0.23	-0.2
4,567,963	+		GFF4576	0.23	-0.2
4,567,971	-		GFF4576	0.24	+0.4
4,567,991	-		GFF4576	0.26	-1.2
4,568,020	+		GFF4576	0.29	+0.3
4,568,035	+		GFF4576	0.31	-0.8
4,568,054	+		GFF4576	0.32	+0.8
4,568,054	+		GFF4576	0.32	-0.6
4,568,062	-		GFF4576	0.33	-0.6
4,568,062	-		GFF4576	0.33	+0.6
4,568,068	+		GFF4576	0.34	+0.4
4,568,068	+		GFF4576	0.34	-0.6
4,568,068	+		GFF4576	0.34	-0.4
4,568,075	+		GFF4576	0.35	+0.7
4,568,076	-		GFF4576	0.35	-0.3
4,568,086	+		GFF4576	0.36	-1.4
4,568,092	-		GFF4576	0.36	+0.8
4,568,092	-		GFF4576	0.36	-1.4
4,568,098	+		GFF4576	0.37	-2.3
4,568,098	+		GFF4576	0.37	-1.0
4,568,098	+		GFF4576	0.37	-2.2
4,568,105	+		GFF4576	0.38	+0.5
4,568,110	+		GFF4576	0.38	+0.1
4,568,110	+		GFF4576	0.38	-0.8
4,568,110	+		GFF4576	0.38	-0.9
4,568,115	+		GFF4576	0.39	+0.2
4,568,123	-		GFF4576	0.39	-0.2
4,568,134	+		GFF4576	0.40	-0.5
4,568,153	-		GFF4576	0.42	-0.1
4,568,161	-		GFF4576	0.43	-0.5
4,568,167	+		GFF4576	0.44	-1.5
4,568,185	+		GFF4576	0.45	-0.2
4,568,193	-		GFF4576	0.46	-1.3
4,568,193	-		GFF4576	0.46	+0.7
4,568,193	-		GFF4576	0.46	+0.1
4,568,193	-		GFF4576	0.46	+1.8
4,568,207	-		GFF4576	0.48	+0.2
4,568,208	+		GFF4576	0.48	-1.0
4,568,220	-		GFF4576	0.49	-0.1
4,568,222	-		GFF4576	0.49	-0.5
4,568,240	+		GFF4576	0.51	-1.2
4,568,246	+		GFF4576	0.52	+1.0
4,568,295	+		GFF4576	0.56	-1.6
4,568,295	+		GFF4576	0.56	+0.0
4,568,295	+		GFF4576	0.56	-1.6
4,568,295	+		GFF4576	0.56	-0.1
4,568,303	-		GFF4576	0.57	-1.2
4,568,303	-		GFF4576	0.57	-0.7
4,568,303	-		GFF4576	0.57	-0.8
4,568,303	-		GFF4576	0.57	+0.0
4,568,303	-		GFF4576	0.57	-0.8
4,568,303	-		GFF4576	0.57	+0.7
4,568,303	-		GFF4576	0.57	-0.8
4,568,303	-		GFF4576	0.57	-0.1
4,568,304	+		GFF4576	0.57	+1.1
4,568,312	+		GFF4576	0.58	-0.2
4,568,313	+		GFF4576	0.58	-0.7
4,568,313	+		GFF4576	0.58	-0.3
4,568,313	+		GFF4576	0.58	-0.6
4,568,313	+		GFF4576	0.58	+1.6
4,568,313	+		GFF4576	0.58	+1.5
4,568,313	+		GFF4576	0.58	-1.5
4,568,314	+		GFF4576	0.58	-2.5
4,568,321	-		GFF4576	0.59	-1.0
4,568,341	+		GFF4576	0.61	-0.7
4,568,341	+		GFF4576	0.61	+0.3
4,568,361	-		GFF4576	0.63	-0.5
4,568,368	+		GFF4576	0.64	+0.6
4,568,369	+		GFF4576	0.64	-1.2
4,568,371	-		GFF4576	0.64	-1.4
4,568,372	-		GFF4576	0.64	-1.0
4,568,379	+		GFF4576	0.65	-0.8
4,568,384	+		GFF4576	0.65	-1.5
4,568,398	+		GFF4576	0.67	-0.5
4,568,405	-		GFF4576	0.67	-0.7
4,568,415	-		GFF4576	0.68	+0.6
4,568,426	+		GFF4576	0.69	-0.8
4,568,504	+		GFF4576	0.77	+0.7
4,568,512	-		GFF4576	0.78	+0.2
4,568,526	+		GFF4576	0.79	-1.4
4,568,538	+		GFF4576	0.81	-0.7
4,568,546	-		GFF4576	0.81	+0.2
4,568,562	-		GFF4576	0.83	-1.7
4,568,575	-		GFF4576	0.84	+0.6
4,568,586	+		GFF4576	0.85	-1.3
4,568,599	-		GFF4576	0.87	-0.2
4,568,619	-		GFF4576	0.89	-1.6
4,568,620	+		GFF4576	0.89	-0.3
4,568,630	+		GFF4576	0.90	+0.5
4,568,637	+				+0.4
4,568,675	-				-1.1
4,568,680	+				-0.5
4,568,687	-				-0.8
4,568,697	+				+0.0
4,568,710	-				-0.6
4,568,715	+				+0.4
4,568,717	+				+1.3
4,568,717	+				+0.0
4,568,723	-				-0.2
4,568,759	-				-0.4
4,568,760	+				+0.3
4,568,760	+				+0.8
4,568,768	-				-0.6
4,568,778	-				-1.9
4,568,787	+				-1.7
4,568,790	-				-0.8
4,568,797	+				-0.1
4,568,816	+				-0.5
4,568,817	+				-2.2
4,568,838	-				+0.5
4,568,838	-				-2.1
4,568,848	-		GFF4577	0.10	-0.9
4,568,862	+		GFF4577	0.12	+0.7
4,568,894	+		GFF4577	0.14	-2.4
4,568,894	+		GFF4577	0.14	+0.1
4,568,894	+		GFF4577	0.14	-0.5
4,568,894	+		GFF4577	0.14	+0.7
4,568,894	+		GFF4577	0.14	+1.1
4,568,894	+		GFF4577	0.14	-0.6
4,568,894	+		GFF4577	0.14	-0.2
4,568,894	+		GFF4577	0.14	-0.5
4,568,894	+		GFF4577	0.14	-0.2
4,568,894	+		GFF4577	0.14	-0.5
4,568,902	-		GFF4577	0.15	-1.3
4,568,902	-		GFF4577	0.15	+0.4
4,568,902	-		GFF4577	0.15	-2.3
4,568,902	-		GFF4577	0.15	-0.6
4,568,902	-		GFF4577	0.15	-0.9
4,568,912	+		GFF4577	0.16	+0.4
4,568,920	-		GFF4577	0.16	-1.5
4,568,930	+		GFF4577	0.17	+0.0
4,568,930	+		GFF4577	0.17	+0.0
4,568,940	+		GFF4577	0.18	+0.1
4,568,940	+		GFF4577	0.18	-0.7
4,568,947	+		GFF4577	0.19	-0.7
4,568,948	-		GFF4577	0.19	+1.7
4,568,948	-		GFF4577	0.19	+0.4
4,568,962	-		GFF4577	0.20	+0.4
4,568,967	+		GFF4577	0.20	-1.7
4,568,983	+		GFF4577	0.22	+0.3
4,568,988	+		GFF4577	0.22	-2.1
4,568,988	+		GFF4577	0.22	-0.5
4,568,988	+		GFF4577	0.22	-0.4
4,568,988	+		GFF4577	0.22	+0.8
4,568,988	+		GFF4577	0.22	+0.6
4,568,991	-		GFF4577	0.23	+0.8
4,568,996	-		GFF4577	0.23	-0.0
4,568,996	-		GFF4577	0.23	+0.9
4,568,996	-		GFF4577	0.23	-1.5
4,569,008	+		GFF4577	0.24	-0.1
4,569,018	+		GFF4577	0.25	-0.1
4,569,019	-		GFF4577	0.25	+0.3
4,569,024	+		GFF4577	0.25	+0.1
4,569,027	+		GFF4577	0.26	-1.5
4,569,035	-		GFF4577	0.26	-0.3
4,569,035	-		GFF4577	0.26	-0.5
4,569,058	+		GFF4577	0.28	+0.0
4,569,058	+		GFF4577	0.28	+0.2
4,569,058	+		GFF4577	0.28	+0.9
4,569,058	+		GFF4577	0.28	-0.7
4,569,059	+		GFF4577	0.28	+1.5
4,569,061	+		GFF4577	0.28	-0.1
4,569,065	+		GFF4577	0.29	-0.3
4,569,065	+		GFF4577	0.29	+0.4
4,569,066	-		GFF4577	0.29	+0.3
4,569,066	-		GFF4577	0.29	-0.1
4,569,068	-		GFF4577	0.29	+0.6
4,569,074	+		GFF4577	0.30	-0.5
4,569,082	-		GFF4577	0.30	-0.1
4,569,092	+		GFF4577	0.31	-1.1
4,569,098	-		GFF4577	0.32	-0.7
4,569,100	+		GFF4577	0.32	-0.5
4,569,100	+		GFF4577	0.32	-2.2
4,569,100	+		GFF4577	0.32	-1.1
4,569,100	+		GFF4577	0.32	+0.9
4,569,100	+		GFF4577	0.32	-1.5
4,569,100	+		GFF4577	0.32	+0.3
4,569,100	+		GFF4577	0.32	-0.1
4,569,100	+		GFF4577	0.32	+0.7
4,569,100	+		GFF4577	0.32	-0.2
4,569,100	+		GFF4577	0.32	+0.1
4,569,100	+		GFF4577	0.32	-1.7
4,569,100	+		GFF4577	0.32	+0.2
4,569,100	+		GFF4577	0.32	+1.0
4,569,108	-		GFF4577	0.32	+0.5
4,569,108	-		GFF4577	0.32	-1.7
4,569,108	-		GFF4577	0.32	+0.7
4,569,108	-		GFF4577	0.32	-2.5
4,569,108	-		GFF4577	0.32	-0.1
4,569,108	-		GFF4577	0.32	+0.3
4,569,108	-		GFF4577	0.32	+0.9
4,569,108	-		GFF4577	0.32	-0.4
4,569,108	-		GFF4577	0.32	+0.1
4,569,108	-		GFF4577	0.32	-1.3
4,569,108	-		GFF4577	0.32	-1.4
4,569,108	-		GFF4577	0.32	+0.3
4,569,108	-		GFF4577	0.32	+0.7
4,569,109	-		GFF4577	0.32	-0.6
4,569,111	+		GFF4577	0.33	-2.2
4,569,111	+		GFF4577	0.33	+0.0
4,569,111	+		GFF4577	0.33	-0.8
4,569,111	+		GFF4577	0.33	+0.7
4,569,111	+		GFF4577	0.33	+1.2
4,569,129	-		GFF4577	0.34	-0.5
4,569,163	-		GFF4577	0.37	+0.6
4,569,188	-		GFF4577	0.39	-1.7
4,569,212	+		GFF4577	0.41	-0.3
4,569,212	-		GFF4577	0.41	-0.9
4,569,220	-		GFF4577	0.42	-0.2
4,569,220	-		GFF4577	0.42	-0.4
4,569,233	+		GFF4577	0.43	-0.2
4,569,237	+		GFF4577	0.43	+0.3
4,569,237	+		GFF4577	0.43	+1.1
4,569,237	+		GFF4577	0.43	-0.2
4,569,245	-		GFF4577	0.44	-2.6
4,569,245	-		GFF4577	0.44	+0.8
4,569,245	-		GFF4577	0.44	+0.9
4,569,245	-		GFF4577	0.44	+0.1
4,569,245	-		GFF4577	0.44	-0.4
4,569,245	-		GFF4577	0.44	+0.5
4,569,247	-		GFF4577	0.44	+0.4
4,569,261	+		GFF4577	0.45	-1.0
4,569,274	+		GFF4577	0.46	-1.1
4,569,286	+		GFF4577	0.47	+0.0
4,569,294	-		GFF4577	0.48	-0.7
4,569,304	+		GFF4577	0.49	+0.6
4,569,308	+		GFF4577	0.49	-0.4
4,569,320	+		GFF4577	0.50	+1.0
4,569,356	-		GFF4577	0.53	+0.5
4,569,356	-		GFF4577	0.53	-2.6
4,569,382	-		GFF4577	0.56	-0.6
4,569,386	+		GFF4577	0.56	+1.0
4,569,396	+		GFF4577	0.57	-1.5
4,569,397	+		GFF4577	0.57	-0.7
4,569,397	+		GFF4577	0.57	-1.2
4,569,405	-		GFF4577	0.58	-0.1
4,569,407	+		GFF4577	0.58	-1.0
4,569,407	+		GFF4577	0.58	-1.9
4,569,415	-		GFF4577	0.58	-2.4
4,569,415	-		GFF4577	0.58	-0.1
4,569,415	-		GFF4577	0.58	+0.2
4,569,415	-		GFF4577	0.58	-0.7
4,569,415	-		GFF4577	0.58	+0.2
4,569,456	+		GFF4577	0.62	-1.2
4,569,456	+		GFF4577	0.62	+0.2
4,569,492	-		GFF4577	0.65	+0.8
4,569,522	+		GFF4577	0.67	+0.7
4,569,525	+		GFF4577	0.68	-0.4
4,569,525	-		GFF4577	0.68	-1.9
4,569,525	-		GFF4577	0.68	-1.6
4,569,533	-		GFF4577	0.68	+0.3
4,569,572	-		GFF4577	0.72	+0.4
4,569,605	-		GFF4577	0.74	-1.5
4,569,608	+		GFF4577	0.75	-1.3
4,569,608	+		GFF4577	0.75	-0.2
4,569,608	+		GFF4577	0.75	-1.6
4,569,618	+		GFF4577	0.76	-1.3
4,569,626	-		GFF4577	0.76	+0.5
4,569,626	-		GFF4577	0.76	-1.2
4,569,626	-		GFF4577	0.76	-0.7
4,569,638	+		GFF4577	0.77	-2.0
4,569,647	+		GFF4577	0.78	-0.6
4,569,656	+		GFF4577	0.79	-0.1
4,569,688	-		GFF4577	0.81	-1.0
4,569,688	-		GFF4577	0.81	-2.0
4,569,688	-		GFF4577	0.81	-2.1
4,569,702	+		GFF4577	0.83	-1.6
4,569,709	+		GFF4577	0.83	+0.5
4,569,716	+		GFF4577	0.84	+0.4
4,569,734	+		GFF4577	0.85	-0.6
4,569,734	+		GFF4577	0.85	-0.1
4,569,742	-		GFF4577	0.86	+0.6
4,569,758	+		GFF4577	0.87	-0.8
4,569,763	+		GFF4577	0.88	+1.0
4,569,766	-		GFF4577	0.88	-0.4
4,569,777	+		GFF4577	0.89	-1.7
4,569,778	+		GFF4577	0.89	+0.3
4,569,783	+		GFF4577	0.90	-0.5
4,569,786	-		GFF4577	0.90	-2.3
4,569,786	-		GFF4577	0.90	-1.6
4,569,793	+				+0.7
4,569,797	-				-1.4
4,569,803	+				-0.1
4,569,803	+				+0.7
4,569,865	+				-0.1
4,569,865	+				+0.2
4,569,873	-				+0.9
4,569,873	-				-0.5
4,569,882	+				-1.1
4,569,900	+				-1.3
4,569,900	+				+0.2
4,569,908	-				-0.9
4,569,908	-				+0.2
4,569,916	+				-1.0
4,569,968	-				+0.5
4,570,013	+				-0.5
4,570,019	-				-1.7
4,570,031	+				-1.4
4,570,056	+				-0.6
4,570,057	+				+1.3
4,570,057	+				-0.1
4,570,096	-				-1.9
4,570,100	+				+0.1
4,570,118	+				+0.9
4,570,284	+				-1.2
4,570,294	+				-0.8
4,570,294	+				-1.2
4,570,315	+				+0.8
4,570,343	+				+0.0
4,570,352	+				-0.5
4,570,357	+				+0.5
4,570,357	+				-0.6
4,570,357	+				+0.1
4,570,357	+				+0.3
4,570,357	+				-0.1
4,570,357	+				-1.7
4,570,360	-				+1.0
4,570,365	-				+0.6
4,570,365	-				-1.4
4,570,365	-				-0.5
4,570,365	-				+0.2
4,570,367	+				-0.2
4,570,367	+				-0.7
4,570,375	-				-0.7
4,570,383	+				-0.1
4,570,396	-		GFF4578	0.11	-0.7
4,570,407	+		GFF4578	0.14	-1.2
4,570,424	+		GFF4578	0.19	+0.1
4,570,452	+		GFF4578	0.27	-2.6
4,570,474	+		GFF4578	0.34	+0.5
4,570,482	-		GFF4578	0.36	-1.3
4,570,506	+		GFF4578	0.43	-1.7
4,570,512	+		GFF4578	0.45	-0.0
4,570,520	-		GFF4578	0.48	+0.0
4,570,520	-		GFF4578	0.48	+1.0
4,570,569	-		GFF4578	0.62	+1.3
4,570,591	-		GFF4578	0.69	-0.8
4,570,619	+		GFF4578	0.77	+0.0
4,570,624	+		GFF4578	0.79	-1.9
4,570,624	+		GFF4578	0.79	+0.2
4,570,624	+		GFF4578	0.79	+0.4
4,570,624	+		GFF4578	0.79	+0.0
4,570,624	+		GFF4578	0.79	-2.1
4,570,626	+		GFF4578	0.79	-1.2
4,570,632	-		GFF4578	0.81	-2.8
4,570,632	-		GFF4578	0.81	-1.9
4,570,632	-		GFF4578	0.81	-0.4
4,570,634	-		GFF4578	0.82	+0.4
4,570,634	-		GFF4578	0.82	+0.1
4,570,658	+		GFF4578	0.89	+0.8
4,570,661	-		GFF4578	0.90	-1.0
4,570,666	-				+0.2
4,570,667	+				-0.8
4,570,667	+				-1.6
4,570,667	+				+0.4
4,570,667	+				-0.6
4,570,667	+				+0.6
4,570,672	+				-0.5
4,570,675	-				-2.1
4,570,675	-				+0.1
4,570,675	-				+0.3
4,570,675	-				+0.4
4,570,675	-				-0.8
4,570,684	+				+1.0
4,570,684	+				+0.8
4,570,684	+				+1.6
4,570,684	+				+0.5
4,570,684	+				+0.7
4,570,684	+				+0.7
4,570,684	+				+0.2
4,570,684	+				-0.1
4,570,684	+				+0.4
4,570,692	-				-1.3
4,570,692	-				-0.2
4,570,692	-				-0.1
4,570,692	-				+0.6
4,570,692	-				-0.1
4,570,692	-				-0.7
4,570,692	-				-0.1
4,570,698	-				-0.7
4,570,698	-				-0.3
4,570,700	+				+0.5
4,570,712	-				-1.6
4,570,741	+				+0.6
4,570,764	+				-0.3
4,570,788	+				-1.5
4,570,788	+				+1.3
4,570,788	+				+0.0
4,570,788	+				-0.3
4,570,793	+				-0.7
4,570,800	+				-0.5
4,570,800	+				-0.4
4,570,805	+				+0.6
4,570,808	-				+0.1
4,570,808	-				-0.2
4,570,808	-				-0.9
4,570,815	+				-0.6
4,570,826	+				+0.4
4,570,840	-				+1.0
4,570,848	+				-0.2
4,570,857	+				+0.0
4,570,857	+				+0.6
4,570,865	+				-0.9
4,570,865	-				-0.9
4,570,865	-				-0.9
4,570,870	-				-1.2
4,570,878	-				-2.4
4,570,903	-		GFF4579	0.11	-1.0