Strain Fitness in Sphingobium sp. HT1-2 around GFF4549

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,539,459	+		GFF4547	0.90	-1.2
4,539,461	+				-0.7
4,539,469	-				-1.0
4,539,497	+				+0.5
4,539,500	-				-0.3
4,539,505	-				-0.1
4,539,505	-				+0.6
4,539,505	-				-0.4
4,539,505	-				-0.4
4,539,505	-				-2.6
4,539,511	+				+0.2
4,539,522	+				-1.9
4,539,527	+				-0.3
4,539,532	+				-1.4
4,539,532	+				+0.8
4,539,540	-				-1.7
4,539,540	-				-0.5
4,539,546	+				-0.0
4,539,554	-				+0.5
4,539,566	+				-3.1
4,539,566	+				-0.5
4,539,571	+				-1.7
4,539,571	+				-1.7
4,539,574	-				-0.0
4,539,574	-				-1.2
4,539,574	-				+0.7
4,539,574	-				+0.0
4,539,579	-				-2.9
4,539,579	-				+0.2
4,539,579	-				-1.7
4,539,579	-				-1.9
4,539,579	-				-0.3
4,539,579	-				+0.2
4,539,584	-				+0.9
4,539,585	+				+0.3
4,539,613	+		GFF4548	0.12	-0.1
4,539,623	+		GFF4548	0.14	+0.1
4,539,623	+		GFF4548	0.14	-0.9
4,539,623	+		GFF4548	0.14	-1.0
4,539,624	-		GFF4548	0.14	-0.5
4,539,626	+		GFF4548	0.14	-0.8
4,539,626	-		GFF4548	0.14	-0.8
4,539,631	+		GFF4548	0.14	-1.5
4,539,631	+		GFF4548	0.14	-0.3
4,539,631	+		GFF4548	0.14	+0.0
4,539,631	-		GFF4548	0.14	-1.5
4,539,631	-		GFF4548	0.14	-0.5
4,539,633	+		GFF4548	0.15	-1.8
4,539,639	-		GFF4548	0.15	+0.3
4,539,641	-		GFF4548	0.16	-1.0
4,539,643	+		GFF4548	0.16	-0.5
4,539,651	+		GFF4548	0.17	-1.0
4,539,658	-		GFF4548	0.17	-2.7
4,539,669	+		GFF4548	0.19	-0.4
4,539,675	-		GFF4548	0.19	+0.1
4,539,684	+		GFF4548	0.20	-0.3
4,539,689	+		GFF4548	0.21	-1.3
4,539,692	-		GFF4548	0.21	-0.9
4,539,694	+		GFF4548	0.21	-2.2
4,539,697	-		GFF4548	0.22	-0.0
4,539,697	-		GFF4548	0.22	+0.9
4,539,702	-		GFF4548	0.22	+0.2
4,539,702	-		GFF4548	0.22	+1.2
4,539,702	-		GFF4548	0.22	-0.3
4,539,705	+		GFF4548	0.23	+1.6
4,539,705	+		GFF4548	0.23	+0.2
4,539,705	+		GFF4548	0.23	-0.5
4,539,713	-		GFF4548	0.24	-0.3
4,539,713	-		GFF4548	0.24	-0.2
4,539,723	+		GFF4548	0.25	-1.3
4,539,723	+		GFF4548	0.25	-1.3
4,539,731	-		GFF4548	0.25	-0.5
4,539,731	-		GFF4548	0.25	+0.4
4,539,741	-		GFF4548	0.27	-0.6
4,539,749	-		GFF4548	0.27	+0.7
4,539,751	+		GFF4548	0.28	+0.6
4,539,751	+		GFF4548	0.28	-0.3
4,539,753	+		GFF4548	0.28	-3.1
4,539,753	+		GFF4548	0.28	+0.0
4,539,758	+		GFF4548	0.28	-2.0
4,539,758	+		GFF4548	0.28	+0.4
4,539,759	-		GFF4548	0.29	-1.3
4,539,759	-		GFF4548	0.29	-1.0
4,539,759	-		GFF4548	0.29	-0.3
4,539,759	-		GFF4548	0.29	-1.7
4,539,761	-		GFF4548	0.29	-1.4
4,539,761	-		GFF4548	0.29	-1.1
4,539,761	-		GFF4548	0.29	+0.4
4,539,766	-		GFF4548	0.29	-2.2
4,539,766	-		GFF4548	0.29	-1.0
4,539,775	+		GFF4548	0.30	+0.5
4,539,778	+		GFF4548	0.31	+0.0
4,539,778	+		GFF4548	0.31	-1.0
4,539,786	-		GFF4548	0.32	-0.5
4,539,788	-		GFF4548	0.32	+0.5
4,539,788	-		GFF4548	0.32	-2.3
4,539,788	-		GFF4548	0.32	-0.7
4,539,788	-		GFF4548	0.32	+0.4
4,539,830	+		GFF4548	0.36	-2.4
4,539,844	-		GFF4548	0.38	-2.5
4,539,852	-		GFF4548	0.39	-0.6
4,539,856	+		GFF4548	0.39	-1.7
4,539,866	-		GFF4548	0.40	+0.0
4,539,877	+		GFF4548	0.42	-1.4
4,539,877	+		GFF4548	0.42	+0.1
4,539,891	-		GFF4548	0.43	-0.1
4,539,891	-		GFF4548	0.43	-0.4
4,539,894	+		GFF4548	0.43	-1.2
4,539,894	+		GFF4548	0.43	-0.7
4,539,894	+		GFF4548	0.43	+0.7
4,539,894	+		GFF4548	0.43	+0.3
4,539,901	-		GFF4548	0.44	+0.2
4,539,902	-		GFF4548	0.44	-1.5
4,539,911	+		GFF4548	0.45	-0.9
4,539,922	+		GFF4548	0.47	-2.4
4,539,922	+		GFF4548	0.47	-2.0
4,539,929	+		GFF4548	0.47	-0.3
4,539,930	-		GFF4548	0.47	-0.4
4,539,930	-		GFF4548	0.47	-1.1
4,539,930	-		GFF4548	0.47	-1.5
4,539,957	+		GFF4548	0.50	-0.7
4,539,959	-		GFF4548	0.51	+0.3
4,539,959	-		GFF4548	0.51	+0.1
4,539,974	-		GFF4548	0.52	+0.0
4,539,989	+		GFF4548	0.54	-0.3
4,539,989	+		GFF4548	0.54	+0.6
4,539,997	-		GFF4548	0.55	+0.4
4,539,997	-		GFF4548	0.55	-1.5
4,540,029	+		GFF4548	0.58	+0.1
4,540,034	+		GFF4548	0.59	-0.5
4,540,037	-		GFF4548	0.59	-1.1
4,540,042	-		GFF4548	0.60	-0.8
4,540,053	+		GFF4548	0.61	-2.0
4,540,069	+		GFF4548	0.63	-0.7
4,540,078	-		GFF4548	0.64	-0.3
4,540,083	-		GFF4548	0.64	-0.7
4,540,092	-		GFF4548	0.65	+0.1
4,540,110	+		GFF4548	0.67	-1.2
4,540,116	-		GFF4548	0.68	-0.7
4,540,122	+		GFF4548	0.69	-1.0
4,540,145	+		GFF4548	0.71	+0.0
4,540,161	-		GFF4548	0.73	-0.5
4,540,185	-		GFF4548	0.76	+0.2
4,540,203	+		GFF4548	0.78	-2.0
4,540,223	+		GFF4548	0.80	-2.1
4,540,230	+		GFF4548	0.81	+0.5
4,540,231	-		GFF4548	0.81	-0.4
4,540,231	-		GFF4548	0.81	-0.4
4,540,240	+		GFF4548	0.82	-2.1
4,540,246	+		GFF4548	0.82	+0.0
4,540,248	-		GFF4548	0.83	+0.2
4,540,254	+		GFF4548	0.83	-2.6
4,540,262	-		GFF4548	0.84	+0.0
4,540,264	-		GFF4548	0.84	-0.3
4,540,264	-		GFF4548	0.84	-0.5
4,540,266	+		GFF4548	0.85	-0.9
4,540,271	+		GFF4548	0.85	-2.7
4,540,276	+		GFF4548	0.86	-2.1
4,540,284	-		GFF4548	0.87	-1.5
4,540,292	-		GFF4548	0.87	-0.9
4,540,316	+				-1.3
4,540,316	-				-1.5
4,540,336	-				-2.9
4,540,345	+				-1.1
4,540,351	+				-0.4
4,540,351	+				+0.1
4,540,353	-				-1.4
4,540,353	-				+0.4
4,540,364	+				-0.8
4,540,382	+				-1.3
4,540,382	+				-2.1
4,540,395	+				+1.0
4,540,395	-				-1.6
4,540,403	-				-0.7
4,540,403	-				-0.1
4,540,403	-				-0.3
4,540,403	-				-0.7
4,540,403	-				-2.0
4,540,408	-				-2.6
4,540,412	+				+0.2
4,540,412	+				+0.3
4,540,450	-				-0.2
4,540,470	-				-0.2
4,540,525	+				-0.9
4,540,537	+				-1.4
4,540,538	+				-0.5
4,540,538	+				-0.4
4,540,546	-		GFF4549	0.11	-2.0
4,540,546	-		GFF4549	0.11	-0.4
4,540,550	+		GFF4549	0.11	-0.2
4,540,560	+		GFF4549	0.13	+1.8
4,540,561	+		GFF4549	0.13	+1.6
4,540,569	-		GFF4549	0.14	-1.0
4,540,586	+		GFF4549	0.16	+0.6
4,540,586	+		GFF4549	0.16	-1.4
4,540,586	+		GFF4549	0.16	-1.7
4,540,586	+		GFF4549	0.16	+0.2
4,540,594	-		GFF4549	0.17	-0.2
4,540,594	-		GFF4549	0.17	-0.3
4,540,598	+		GFF4549	0.17	-0.3
4,540,611	+		GFF4549	0.19	-0.6
4,540,630	+		GFF4549	0.21	+0.3
4,540,664	+		GFF4549	0.25	+0.2
4,540,664	+		GFF4549	0.25	+0.5
4,540,664	+		GFF4549	0.25	-0.1
4,540,671	+		GFF4549	0.26	-0.6
4,540,671	+		GFF4549	0.26	+0.2
4,540,671	-		GFF4549	0.26	-0.5
4,540,672	-		GFF4549	0.26	-1.4
4,540,672	-		GFF4549	0.26	-1.3
4,540,679	-		GFF4549	0.27	-1.9
4,540,679	-		GFF4549	0.27	-0.0
4,540,733	+		GFF4549	0.34	-0.6
4,540,741	-		GFF4549	0.35	-0.5
4,540,751	-		GFF4549	0.36	-0.8
4,540,754	+		GFF4549	0.37	-0.8
4,540,754	+		GFF4549	0.37	-1.7
4,540,754	+		GFF4549	0.37	-0.7
4,540,754	+		GFF4549	0.37	-0.6
4,540,754	+		GFF4549	0.37	-0.2
4,540,754	+		GFF4549	0.37	-0.2
4,540,762	-		GFF4549	0.38	-0.3
4,540,762	-		GFF4549	0.38	-0.3
4,540,762	-		GFF4549	0.38	-2.1
4,540,762	-		GFF4549	0.38	-1.8
4,540,762	-		GFF4549	0.38	+0.7
4,540,762	-		GFF4549	0.38	-0.7
4,540,762	-		GFF4549	0.38	+0.9
4,540,777	+		GFF4549	0.39	-0.3
4,540,813	+		GFF4549	0.44	-1.9
4,540,816	-		GFF4549	0.44	-0.3
4,540,816	-		GFF4549	0.44	-0.6
4,540,821	-		GFF4549	0.45	+1.2
4,540,821	-		GFF4549	0.45	+0.1
4,540,821	-		GFF4549	0.45	-1.6
4,540,821	-		GFF4549	0.45	+0.6
4,540,821	-		GFF4549	0.45	-2.1
4,540,821	-		GFF4549	0.45	+1.2
4,540,821	-		GFF4549	0.45	-1.7
4,540,821	-		GFF4549	0.45	-2.2
4,540,831	+		GFF4549	0.46	-1.9
4,540,831	+		GFF4549	0.46	-0.3
4,540,831	+		GFF4549	0.46	-1.1
4,540,839	-		GFF4549	0.47	+0.5
4,540,839	-		GFF4549	0.47	-0.6
4,540,839	-		GFF4549	0.47	-1.0
4,540,839	-		GFF4549	0.47	+0.3
4,540,875	+		GFF4549	0.52	+0.0
4,540,883	-		GFF4549	0.53	-1.4
4,540,892	+		GFF4549	0.54	-1.1
4,540,892	+		GFF4549	0.54	-0.7
4,540,903	+		GFF4549	0.55	-0.3
4,540,917	-		GFF4549	0.57	-0.3
4,540,933	-		GFF4549	0.59	-0.5
4,540,937	-		GFF4549	0.59	-0.9
4,540,944	+		GFF4549	0.60	-1.4
4,540,952	-		GFF4549	0.61	+0.9
4,540,952	-		GFF4549	0.61	+0.3
4,540,974	+		GFF4549	0.64	-0.3
4,540,974	+		GFF4549	0.64	-0.1
4,540,982	-		GFF4549	0.65	-1.9
4,540,982	-		GFF4549	0.65	-0.0
4,540,987	-		GFF4549	0.65	-0.2
4,540,987	-		GFF4549	0.65	-0.4
4,541,032	+		GFF4549	0.71	-0.1
4,541,042	+		GFF4549	0.72	-0.5
4,541,044	+		GFF4549	0.72	-1.3
4,541,044	+		GFF4549	0.72	-0.8
4,541,048	+		GFF4549	0.73	-0.2
4,541,050	-		GFF4549	0.73	-0.8
4,541,050	-		GFF4549	0.73	-0.8
4,541,052	-		GFF4549	0.73	-0.0
4,541,052	-		GFF4549	0.73	+0.5
4,541,059	+		GFF4549	0.74	-2.4
4,541,070	+		GFF4549	0.76	+0.8
4,541,120	+		GFF4549	0.82	-0.3
4,541,138	-		GFF4549	0.84	-2.1
4,541,180	+		GFF4549	0.89	+1.3
4,541,218	+				+0.9
4,541,218	+				+0.0
4,541,218	+				-1.6
4,541,223	+				-2.1
4,541,225	-				-1.4
4,541,225	-				-1.8
4,541,231	-				-0.8
4,541,231	-				-0.1
4,541,231	-				-0.2
4,541,272	+				-0.8
4,541,272	+				-1.8
4,541,272	+				-0.6
4,541,272	+				-2.1
4,541,274	-				+0.1
4,541,274	-				-0.0
4,541,280	-				+0.5
4,541,290	-				+1.1
4,541,290	-				-1.4
4,541,290	-				-0.8
4,541,298	-				-1.0
4,541,304	-				-1.1
4,541,337	+				-0.6
4,541,343	+				-0.6
4,541,345	-				-0.6
4,541,350	-				-2.1
4,541,351	+				-0.9
4,541,352	+				-1.1
4,541,356	+				-0.7
4,541,359	-				-1.4
4,541,360	-				+0.4
4,541,360	-				-0.0
4,541,411	-				-0.8
4,541,414	-				-1.4
4,541,421	+				-0.9
4,541,421	+				+0.8
4,541,421	+				+0.3
4,541,421	+				-1.4
4,541,424	-				-0.5
4,541,429	-		GFF4550	0.10	+0.7
4,541,436	-		GFF4550	0.11	-0.8
4,541,461	-		GFF4550	0.15	-1.7
4,541,498	-		GFF4550	0.20	+0.7
4,541,498	-		GFF4550	0.20	+1.4
4,541,522	+		GFF4550	0.23	+0.0
4,541,524	+		GFF4550	0.24	+1.1
4,541,524	+		GFF4550	0.24	+0.2
4,541,532	+		GFF4550	0.25	-1.7
4,541,532	-		GFF4550	0.25	+0.0
4,541,539	+		GFF4550	0.26	-2.9
4,541,541	+		GFF4550	0.26	-0.7
4,541,541	+		GFF4550	0.26	-0.7
4,541,541	+		GFF4550	0.26	-1.1
4,541,541	+		GFF4550	0.26	-1.4
4,541,541	+		GFF4550	0.26	-1.9
4,541,546	+		GFF4550	0.27	+0.7
4,541,546	+		GFF4550	0.27	-2.4
4,541,546	+		GFF4550	0.27	-1.9
4,541,546	+		GFF4550	0.27	+0.2
4,541,547	-		GFF4550	0.27	+1.2
4,541,547	-		GFF4550	0.27	-1.4
4,541,549	-		GFF4550	0.27	+0.9
4,541,549	-		GFF4550	0.27	+1.1
4,541,566	-		GFF4550	0.29	-0.3
4,541,573	+		GFF4550	0.30	-1.4
4,541,581	-		GFF4550	0.31	-0.1
4,541,585	+		GFF4550	0.32	-1.4
4,541,591	-		GFF4550	0.33	+1.2
4,541,593	+		GFF4550	0.33	-0.8
4,541,593	-		GFF4550	0.33	-0.5
4,541,606	-		GFF4550	0.35	-0.9
4,541,614	-		GFF4550	0.36	-0.6
4,541,646	-		GFF4550	0.40	-2.0
4,541,648	-		GFF4550	0.41	-0.1
4,541,653	+		GFF4550	0.41	+0.4
4,541,661	-		GFF4550	0.42	+0.0
4,541,661	-		GFF4550	0.42	-1.2
4,541,661	-		GFF4550	0.42	-0.6
4,541,667	-		GFF4550	0.43	-1.1
4,541,670	+		GFF4550	0.44	-1.5
4,541,670	+		GFF4550	0.44	+0.9
4,541,670	+		GFF4550	0.44	-0.7
4,541,670	+		GFF4550	0.44	-1.4
4,541,678	-		GFF4550	0.45	-1.3
4,541,678	-		GFF4550	0.45	-0.8
4,541,678	-		GFF4550	0.45	+0.6
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