Strain Fitness in Sphingobium sp. HT1-2 around GFF4536

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,527,585	+				-2.0
4,527,588	+				-0.0
4,527,593	-				-0.2
4,527,593	-				-1.2
4,527,593	-				-0.1
4,527,598	-				-2.2
4,527,644	+		GFF4535	0.13	+0.0
4,527,648	+		GFF4535	0.14	-1.5
4,527,648	+		GFF4535	0.14	+0.7
4,527,648	+		GFF4535	0.14	-1.0
4,527,656	-		GFF4535	0.15	-2.5
4,527,656	-		GFF4535	0.15	-0.1
4,527,656	-		GFF4535	0.15	-1.0
4,527,702	+		GFF4535	0.19	-1.2
4,527,751	+		GFF4535	0.23	-0.5
4,527,754	-		GFF4535	0.24	+0.1
4,527,774	-		GFF4535	0.25	-0.1
4,527,816	-		GFF4535	0.29	-1.8
4,527,827	+		GFF4535	0.30	-0.4
4,527,847	-		GFF4535	0.32	-2.3
4,527,857	+		GFF4535	0.33	+0.3
4,527,865	-		GFF4535	0.34	+0.0
4,527,959	+		GFF4535	0.43	+0.4
4,527,967	-		GFF4535	0.43	-0.6
4,527,973	-		GFF4535	0.44	-1.6
4,527,980	-		GFF4535	0.45	+0.6
4,527,998	+		GFF4535	0.46	+0.4
4,528,003	+		GFF4535	0.47	-2.5
4,528,003	+		GFF4535	0.47	+0.5
4,528,028	+		GFF4535	0.49	-2.2
4,528,068	+		GFF4535	0.53	-0.5
4,528,068	+		GFF4535	0.53	-0.5
4,528,076	-		GFF4535	0.53	-0.3
4,528,076	-		GFF4535	0.53	-0.8
4,528,076	-		GFF4535	0.53	+0.2
4,528,076	-		GFF4535	0.53	-0.4
4,528,076	-		GFF4535	0.53	-0.3
4,528,076	-		GFF4535	0.53	+0.6
4,528,086	+		GFF4535	0.54	-1.6
4,528,089	+		GFF4535	0.55	+0.3
4,528,110	+		GFF4535	0.57	-0.5
4,528,111	+		GFF4535	0.57	-1.8
4,528,127	+		GFF4535	0.58	+1.0
4,528,132	+		GFF4535	0.59	-0.4
4,528,132	+		GFF4535	0.59	-2.2
4,528,152	+		GFF4535	0.60	-2.6
4,528,152	+		GFF4535	0.60	-0.4
4,528,152	+		GFF4535	0.60	-1.0
4,528,160	-		GFF4535	0.61	-1.6
4,528,170	+		GFF4535	0.62	+0.9
4,528,170	+		GFF4535	0.62	-0.2
4,528,170	+		GFF4535	0.62	-0.8
4,528,178	-		GFF4535	0.63	+0.5
4,528,185	-		GFF4535	0.63	-0.4
4,528,187	+		GFF4535	0.64	-1.4
4,528,187	+		GFF4535	0.64	-0.7
4,528,187	+		GFF4535	0.64	-1.4
4,528,187	+		GFF4535	0.64	+0.2
4,528,195	-		GFF4535	0.64	-2.8
4,528,195	-		GFF4535	0.64	-1.0
4,528,195	-		GFF4535	0.64	-0.2
4,528,202	+		GFF4535	0.65	-2.2
4,528,202	+		GFF4535	0.65	-0.3
4,528,202	+		GFF4535	0.65	+0.6
4,528,202	+		GFF4535	0.65	-0.3
4,528,202	+		GFF4535	0.65	-0.5
4,528,202	+		GFF4535	0.65	-0.9
4,528,202	+		GFF4535	0.65	+0.6
4,528,202	+		GFF4535	0.65	-0.5
4,528,202	+		GFF4535	0.65	-0.8
4,528,202	+		GFF4535	0.65	-0.5
4,528,202	+		GFF4535	0.65	-1.6
4,528,202	+		GFF4535	0.65	+0.6
4,528,202	+		GFF4535	0.65	+0.3
4,528,210	-		GFF4535	0.66	-0.7
4,528,210	-		GFF4535	0.66	-0.3
4,528,210	-		GFF4535	0.66	-2.0
4,528,210	-		GFF4535	0.66	-0.8
4,528,210	-		GFF4535	0.66	-1.0
4,528,210	-		GFF4535	0.66	-0.5
4,528,210	-		GFF4535	0.66	-1.1
4,528,210	-		GFF4535	0.66	-1.2
4,528,210	-		GFF4535	0.66	-1.5
4,528,210	-		GFF4535	0.66	+0.3
4,528,210	-		GFF4535	0.66	-0.3
4,528,210	-		GFF4535	0.66	-0.7
4,528,210	-		GFF4535	0.66	-1.5
4,528,210	-		GFF4535	0.66	+0.3
4,528,225	+		GFF4535	0.67	-0.4
4,528,239	+		GFF4535	0.68	-0.8
4,528,245	+		GFF4535	0.69	-2.0
4,528,245	+		GFF4535	0.69	+0.1
4,528,247	-		GFF4535	0.69	-1.5
4,528,250	+		GFF4535	0.69	-0.8
4,528,250	+		GFF4535	0.69	-0.6
4,528,253	-		GFF4535	0.70	+0.6
4,528,261	+		GFF4535	0.70	-0.9
4,528,262	-		GFF4535	0.71	-0.3
4,528,279	-		GFF4535	0.72	+0.0
4,528,304	+		GFF4535	0.74	-2.1
4,528,312	-		GFF4535	0.75	-0.3
4,528,312	-		GFF4535	0.75	-0.8
4,528,312	-		GFF4535	0.75	+0.8
4,528,325	-		GFF4535	0.76	-0.4
4,528,338	+		GFF4535	0.78	-0.1
4,528,343	+		GFF4535	0.78	+0.1
4,528,343	+		GFF4535	0.78	-0.1
4,528,343	+		GFF4535	0.78	-1.1
4,528,350	+		GFF4535	0.79	+1.0
4,528,355	+		GFF4535	0.79	-2.3
4,528,355	+		GFF4535	0.79	+0.8
4,528,355	+		GFF4535	0.79	-0.9
4,528,356	+		GFF4535	0.79	-0.1
4,528,357	-		GFF4535	0.79	+0.4
4,528,357	-		GFF4535	0.79	-1.5
4,528,357	-		GFF4535	0.79	+0.7
4,528,358	-		GFF4535	0.79	+0.3
4,528,367	+		GFF4535	0.80	+0.2
4,528,391	-		GFF4535	0.82	+0.3
4,528,391	-		GFF4535	0.82	+1.0
4,528,391	-		GFF4535	0.82	+0.9
4,528,402	-		GFF4535	0.83	+0.0
4,528,416	-		GFF4535	0.85	-0.3
4,528,421	-		GFF4535	0.85	-0.0
4,528,426	+		GFF4535	0.86	-0.8
4,528,443	+		GFF4535	0.87	-0.7
4,528,448	+		GFF4535	0.88	+0.7
4,528,483	-				-0.2
4,528,490	+				-2.0
4,528,496	+				-1.8
4,528,535	+				-1.0
4,528,545	+				-0.2
4,528,555	-				-0.6
4,528,558	-				-1.2
4,528,604	+				+0.2
4,528,617	+				-0.1
4,528,640	-				+0.4
4,528,666	+				-0.5
4,528,666	+				+0.1
4,528,674	-				+0.9
4,528,674	-				-0.6
4,528,733	+		GFF4536	0.15	+0.4
4,528,752	+		GFF4536	0.16	+0.9
4,528,762	+		GFF4536	0.17	+0.8
4,528,767	+		GFF4536	0.18	+0.2
4,528,767	+		GFF4536	0.18	+0.3
4,528,770	-		GFF4536	0.18	-2.2
4,528,770	-		GFF4536	0.18	-0.7
4,528,775	-		GFF4536	0.19	-0.0
4,528,778	+		GFF4536	0.19	-0.2
4,528,779	+		GFF4536	0.19	+1.0
4,528,789	+		GFF4536	0.20	-1.3
4,528,803	+		GFF4536	0.21	-0.4
4,528,838	+		GFF4536	0.25	+0.8
4,528,851	-		GFF4536	0.26	-2.7
4,528,856	-		GFF4536	0.27	+0.2
4,528,856	-		GFF4536	0.27	+1.4
4,528,858	-		GFF4536	0.27	-0.1
4,528,878	-		GFF4536	0.29	+0.1
4,528,878	-		GFF4536	0.29	-0.7
4,528,878	-		GFF4536	0.29	-2.8
4,528,886	+		GFF4536	0.30	-0.8
4,528,891	+		GFF4536	0.30	-2.0
4,528,895	+		GFF4536	0.31	-0.2
4,528,899	-		GFF4536	0.31	-0.5
4,528,904	-		GFF4536	0.31	-2.0
4,528,905	+		GFF4536	0.32	+0.0
4,528,913	-		GFF4536	0.32	-1.0
4,528,946	+		GFF4536	0.36	-0.0
4,528,952	-		GFF4536	0.36	-1.2
4,528,954	-		GFF4536	0.36	-0.7
4,528,965	+		GFF4536	0.37	-0.4
4,529,005	-		GFF4536	0.41	-2.2
4,529,007	+		GFF4536	0.42	-0.1
4,529,037	+		GFF4536	0.45	-0.4
4,529,041	+		GFF4536	0.45	-1.0
4,529,042	+		GFF4536	0.45	+1.0
4,529,042	+		GFF4536	0.45	-0.7
4,529,042	+		GFF4536	0.45	+0.9
4,529,042	+		GFF4536	0.45	-0.1
4,529,049	-		GFF4536	0.46	-1.1
4,529,050	-		GFF4536	0.46	-1.0
4,529,050	-		GFF4536	0.46	-0.2
4,529,050	-		GFF4536	0.46	+0.3
4,529,050	-		GFF4536	0.46	-0.2
4,529,050	-		GFF4536	0.46	+0.0
4,529,055	-		GFF4536	0.46	-0.8
4,529,080	+		GFF4536	0.49	+0.2
4,529,085	+		GFF4536	0.49	-0.8
4,529,086	+		GFF4536	0.49	-1.0
4,529,120	+		GFF4536	0.53	+0.2
4,529,129	+		GFF4536	0.54	-0.2
4,529,137	-		GFF4536	0.54	-1.1
4,529,137	-		GFF4536	0.54	+0.3
4,529,148	+		GFF4536	0.56	+0.0
4,529,169	-		GFF4536	0.58	-1.4
4,529,170	+		GFF4536	0.58	+0.4
4,529,178	-		GFF4536	0.58	-0.6
4,529,192	+		GFF4536	0.60	-0.8
4,529,197	+		GFF4536	0.60	+0.1
4,529,197	+		GFF4536	0.60	-1.4
4,529,197	+		GFF4536	0.60	-1.0
4,529,200	-		GFF4536	0.61	-0.5
4,529,207	+		GFF4536	0.61	+0.0
4,529,210	-		GFF4536	0.62	-0.8
4,529,210	-		GFF4536	0.62	-0.1
4,529,210	-		GFF4536	0.62	-1.9
4,529,220	-		GFF4536	0.63	+0.2
4,529,224	+		GFF4536	0.63	+0.0
4,529,258	-		GFF4536	0.66	+0.5
4,529,269	+		GFF4536	0.67	-1.5
4,529,269	+		GFF4536	0.67	-0.7
4,529,269	+		GFF4536	0.67	-0.2
4,529,269	+		GFF4536	0.67	-0.7
4,529,269	+		GFF4536	0.67	+0.5
4,529,269	+		GFF4536	0.67	-2.4
4,529,274	+		GFF4536	0.68	-0.1
4,529,274	+		GFF4536	0.68	-1.9
4,529,275	+		GFF4536	0.68	+0.5
4,529,277	-		GFF4536	0.68	+0.0
4,529,277	-		GFF4536	0.68	-0.5
4,529,277	-		GFF4536	0.68	-0.7
4,529,282	-		GFF4536	0.69	-0.8
4,529,282	-		GFF4536	0.69	+0.4
4,529,282	-		GFF4536	0.69	+0.3
4,529,296	+		GFF4536	0.70	+0.5
4,529,312	+		GFF4536	0.72	+1.6
4,529,320	+		GFF4536	0.72	-1.6
4,529,320	-		GFF4536	0.72	-2.0
4,529,320	-		GFF4536	0.72	+1.5
4,529,320	-		GFF4536	0.72	-0.9
4,529,322	+		GFF4536	0.73	-0.3
4,529,345	+		GFF4536	0.75	-0.2
4,529,350	+		GFF4536	0.75	+0.1
4,529,353	-		GFF4536	0.76	+1.0
4,529,355	+		GFF4536	0.76	+0.4
4,529,363	-		GFF4536	0.77	-0.5
4,529,367	-		GFF4536	0.77	-2.0
4,529,377	-		GFF4536	0.78	+0.0
4,529,413	+		GFF4536	0.82	+0.5
4,529,414	-		GFF4536	0.82	-1.1
4,529,433	+		GFF4536	0.84	+0.8
4,529,441	-		GFF4536	0.84	+0.1
4,529,466	+		GFF4536	0.87	+0.7
4,529,473	-		GFF4536	0.88	+1.3
4,529,474	-		GFF4536	0.88	-0.9
4,529,480	-		GFF4536	0.88	+0.6
4,529,480	-		GFF4536	0.88	+0.5
4,529,490	-		GFF4536	0.89	-1.7
4,529,508	+				+0.2
4,529,526	+				-0.1
4,529,546	-				-0.4
4,529,592	-				+1.2
4,529,603	-				-2.3
4,529,611	-				+0.0
4,529,661	-				+0.3
4,529,661	-				-0.5
4,529,673	+				-1.0
4,529,724	+		GFF4537	0.21	-0.8
4,529,732	-		GFF4537	0.22	-0.8
4,529,732	-		GFF4537	0.22	-1.9
4,529,736	+		GFF4537	0.23	+0.5
4,529,736	+		GFF4537	0.23	+0.6
4,529,736	+		GFF4537	0.23	+1.4
4,529,736	+		GFF4537	0.23	-0.5
4,529,736	+		GFF4537	0.23	-0.0
4,529,739	-		GFF4537	0.24	-1.1
4,529,744	-		GFF4537	0.25	-0.6
4,529,744	-		GFF4537	0.25	-0.7
4,529,744	-		GFF4537	0.25	-1.8
4,529,744	-		GFF4537	0.25	-2.5
4,529,749	-		GFF4537	0.26	+1.2
4,529,765	+		GFF4537	0.30	-0.2
4,529,773	-		GFF4537	0.32	-1.6
4,529,773	-		GFF4537	0.32	+0.1
4,529,773	-		GFF4537	0.32	-1.1
4,529,779	+		GFF4537	0.33	-1.2
4,529,801	+		GFF4537	0.38	+0.5
4,529,804	-		GFF4537	0.39	-0.7
4,529,819	+		GFF4537	0.43	-0.2
4,529,834	+		GFF4537	0.46	-0.8
4,529,840	+		GFF4537	0.47	-1.0
4,529,845	+		GFF4537	0.49	-0.3
4,529,848	-		GFF4537	0.49	-1.6
4,529,853	-		GFF4537	0.50	-0.5
4,529,853	-		GFF4537	0.50	+0.7
4,529,853	-		GFF4537	0.50	-0.2
4,529,855	+		GFF4537	0.51	-0.7
4,529,855	-		GFF4537	0.51	-0.1
4,529,883	+		GFF4537	0.57	-0.1
4,529,883	+		GFF4537	0.57	-1.0
4,529,891	-		GFF4537	0.59	-1.3
4,529,891	-		GFF4537	0.59	-0.2
4,529,898	+		GFF4537	0.61	-0.5
4,529,924	+		GFF4537	0.67	-0.5
4,529,929	+		GFF4537	0.68	+0.4
4,529,934	+		GFF4537	0.69	-0.1
4,529,940	-		GFF4537	0.71	+0.4
4,529,960	-		GFF4537	0.75	-0.4
4,529,980	-		GFF4537	0.80	-2.0
4,529,996	+		GFF4537	0.84	-1.1
4,530,001	+		GFF4537	0.85	-1.8
4,530,001	+		GFF4537	0.85	+0.0
4,530,001	+		GFF4537	0.85	-0.0
4,530,001	+		GFF4537	0.85	+0.9
4,530,001	+		GFF4537	0.85	-1.8
4,530,004	-		GFF4537	0.85	-1.0
4,530,009	-		GFF4537	0.87	+0.6
4,530,009	-		GFF4537	0.87	+0.7
4,530,011	+		GFF4537	0.87	-0.5
4,530,011	+		GFF4537	0.87	-1.2
4,530,014	-		GFF4537	0.88	-0.9
4,530,016	+		GFF4537	0.88	-0.4
4,530,019	-		GFF4537	0.89	+0.4
4,530,045	+				-1.9
4,530,066	+				-1.5
4,530,069	+				-1.3
4,530,074	+				-2.4
4,530,107	+				+0.6
4,530,107	+				-0.3
4,530,107	+				-1.7
4,530,115	-				-0.8
4,530,132	+				-1.0
4,530,140	-				+0.5
4,530,140	-				-0.7
4,530,142	-				-1.2
4,530,185	-		GFF4538	0.27	-0.4
4,530,190	-		GFF4538	0.29	+0.1
4,530,214	+		GFF4538	0.39	-2.2
4,530,214	+		GFF4538	0.39	-1.3
4,530,222	-		GFF4538	0.42	-0.6
4,530,252	+		GFF4538	0.55	+0.4
4,530,260	-		GFF4538	0.58	-3.0
4,530,280	+		GFF4538	0.67	-0.7
4,530,280	+		GFF4538	0.67	-1.7
4,530,280	+		GFF4538	0.67	-1.8
4,530,280	+		GFF4538	0.67	-1.0
4,530,280	+		GFF4538	0.67	+0.2
4,530,283	-		GFF4538	0.68	-1.2
4,530,288	-		GFF4538	0.70	-0.1
4,530,288	-		GFF4538	0.70	+0.1
4,530,293	-		GFF4538	0.72	-0.0
4,530,294	-		GFF4538	0.73	-0.3
4,530,294	-		GFF4538	0.73	-1.3
4,530,311	-		GFF4538	0.80	-0.0
4,530,315	+		GFF4538	0.81	-1.0
4,530,323	-		GFF4538	0.85	+0.3
4,530,355	+				+0.0
4,530,363	-				+1.0
4,530,365	+				-0.5
4,530,388	-				-0.3
4,530,388	-				-0.7