Strain Fitness in Sphingobium sp. HT1-2 around GFF4532

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,520,252	+				-1.8
4,520,252	+				-0.2
4,520,260	+				-1.5
4,520,280	+				+0.6
4,520,280	+				-0.2
4,520,288	-				+0.0
4,520,288	-				-1.8
4,520,288	-				-1.3
4,520,291	+				+1.1
4,520,296	+				+0.5
4,520,296	+				+0.5
4,520,299	-				-0.2
4,520,301	+				-1.4
4,520,301	+				-0.2
4,520,301	+				-1.8
4,520,301	+				-1.4
4,520,301	+				-0.1
4,520,316	-				+0.2
4,520,337	-				-1.0
4,520,348	+				-1.1
4,520,353	+				-0.5
4,520,357	-				-0.1
4,520,361	-				-1.3
4,520,363	+				-0.0
4,520,363	+				+1.2
4,520,363	+				+0.9
4,520,366	+				-1.4
4,520,366	+				+0.8
4,520,371	-				+1.1
4,520,371	-				-2.5
4,520,371	-				-1.0
4,520,376	-				+0.2
4,520,376	-				-0.8
4,520,385	+				+1.5
4,520,407	+		GFF4530	0.14	-2.4
4,520,430	+		GFF4530	0.25	-1.5
4,520,442	+		GFF4530	0.30	-0.3
4,520,450	-		GFF4530	0.34	+0.1
4,520,452	+		GFF4530	0.35	-0.6
4,520,452	+		GFF4530	0.35	+0.9
4,520,460	-		GFF4530	0.38	-1.5
4,520,461	+		GFF4530	0.39	-0.5
4,520,463	+		GFF4530	0.40	+0.2
4,520,463	+		GFF4530	0.40	-1.2
4,520,469	-		GFF4530	0.43	-2.1
4,520,471	-		GFF4530	0.44	-2.5
4,520,471	-		GFF4530	0.44	-0.9
4,520,471	-		GFF4530	0.44	-1.5
4,520,486	-		GFF4530	0.50	-1.1
4,520,486	-		GFF4530	0.50	-0.2
4,520,508	+		GFF4530	0.61	-0.7
4,520,516	-		GFF4530	0.64	-1.1
4,520,595	+				+0.3
4,520,601	+				+0.6
4,520,608	-				+0.2
4,520,619	+				-0.0
4,520,656	+		GFF4531	0.11	-1.1
4,520,661	+		GFF4531	0.12	+0.7
4,520,661	+		GFF4531	0.12	-0.3
4,520,669	-		GFF4531	0.13	-0.8
4,520,708	+		GFF4531	0.20	-0.4
4,520,729	-		GFF4531	0.23	-0.0
4,520,745	+		GFF4531	0.26	+0.9
4,520,754	-		GFF4531	0.28	-1.4
4,520,762	-		GFF4531	0.29	-0.3
4,520,767	+		GFF4531	0.30	+0.1
4,520,803	+		GFF4531	0.36	-0.1
4,520,803	+		GFF4531	0.36	-0.5
4,520,811	-		GFF4531	0.37	-3.2
4,520,811	-		GFF4531	0.37	-1.4
4,520,811	-		GFF4531	0.37	-1.4
4,520,826	+		GFF4531	0.40	-1.1
4,520,829	-		GFF4531	0.40	-0.7
4,520,834	-		GFF4531	0.41	+0.7
4,520,834	-		GFF4531	0.41	-0.1
4,520,850	+		GFF4531	0.44	-1.0
4,520,850	+		GFF4531	0.44	-0.7
4,520,850	+		GFF4531	0.44	-0.9
4,520,850	+		GFF4531	0.44	-2.3
4,520,850	+		GFF4531	0.44	+0.4
4,520,850	+		GFF4531	0.44	+1.9
4,520,855	+		GFF4531	0.45	+0.6
4,520,858	-		GFF4531	0.45	+0.7
4,520,858	-		GFF4531	0.45	+0.0
4,520,858	-		GFF4531	0.45	-1.2
4,520,908	+		GFF4531	0.53	-0.2
4,520,918	+		GFF4531	0.55	+0.2
4,520,921	-		GFF4531	0.56	+0.5
4,520,965	+		GFF4531	0.63	+0.1
4,520,986	+		GFF4531	0.66	+0.6
4,520,986	+		GFF4531	0.66	-1.5
4,520,986	+		GFF4531	0.66	+0.1
4,520,989	-		GFF4531	0.67	-0.2
4,520,989	-		GFF4531	0.67	-0.3
4,521,008	+		GFF4531	0.70	-0.2
4,521,039	-		GFF4531	0.75	-0.8
4,521,047	-		GFF4531	0.77	-1.1
4,521,066	+		GFF4531	0.80	-0.0
4,521,066	+		GFF4531	0.80	+0.2
4,521,066	+		GFF4531	0.80	-0.5
4,521,072	+		GFF4531	0.81	-2.7
4,521,078	-		GFF4531	0.82	-0.5
4,521,078	-		GFF4531	0.82	-1.5
4,521,079	-		GFF4531	0.82	-1.5
4,521,086	-		GFF4531	0.83	+0.2
4,521,093	-		GFF4531	0.84	-0.1
4,521,097	-		GFF4531	0.85	-0.3
4,521,108	-		GFF4531	0.87	-1.0
4,521,123	+		GFF4531	0.89	-0.7
4,521,131	-				-0.4
4,521,150	+				-0.7
4,521,158	-				+0.1
4,521,163	-				-1.5
4,521,165	+				+1.1
4,521,165	+				-2.4
4,521,169	+				-0.4
4,521,173	-				+0.5
4,521,173	-				+0.4
4,521,173	-				-0.3
4,521,173	-				-0.8
4,521,179	+				-0.1
4,521,182	-				+0.3
4,521,184	+				-0.8
4,521,184	+				+0.5
4,521,187	-				+0.3
4,521,187	-				-1.4
4,521,187	-				+0.5
4,521,187	-				-0.4
4,521,187	-				-2.3
4,521,187	-				-1.2
4,521,187	-				-0.3
4,521,187	-				+0.5
4,521,187	-				-0.3
4,521,187	-				+0.4
4,521,190	+				-0.8
4,521,192	-				+0.3
4,521,195	+				-0.8
4,524,055	+				-2.2
4,524,055	+				+0.3
4,524,063	-				-0.0
4,524,073	-				-1.5
4,524,076	+				-1.0
4,524,079	+				+0.2
4,524,079	+				-1.4
4,524,082	-				+1.0
4,524,084	+				+0.7
4,524,087	-				-0.0
4,524,087	-				-0.8
4,524,087	-				-1.4
4,524,087	-				-0.5
4,524,088	+				-0.4
4,524,088	+				-0.2
4,524,096	-				-0.8
4,524,096	-				-1.4
4,524,101	-				+0.5
4,524,118	+				+0.3
4,524,118	+				+0.4
4,524,118	+				-2.8
4,524,118	+				-3.0
4,524,118	+				+0.5
4,524,126	-				+0.3
4,524,126	-				+0.0
4,524,126	-				-0.7
4,524,126	-				+0.8
4,524,126	-				+0.0
4,524,126	-				-0.1
4,524,126	-				+0.3
4,524,126	-				+1.6
4,524,126	-				-1.1
4,524,132	-				-0.8
4,524,139	+				+0.6
4,524,140	+				-0.8
4,524,141	+				-0.0
4,524,141	+				+0.2
4,524,141	+				+0.9
4,524,147	-				-2.5
4,524,147	-				-2.0
4,524,148	-				-0.3
4,524,149	-				+0.2
4,524,149	-				-1.5
4,524,149	-				-0.4
4,524,156	+				-0.5
4,524,157	-				-0.4
4,524,164	+				-1.1
4,524,164	+				-0.6
4,524,164	+				-1.0
4,524,164	-				-1.7
4,524,177	-				+0.1
4,524,178	+				-0.7
4,524,179	+				-1.3
4,524,187	-				-1.1
4,524,224	-				+0.9
4,524,231	-				-0.3
4,524,241	+				-2.0
4,524,278	+		GFF4533	0.10	-0.2
4,524,286	-		GFF4533	0.11	-0.2
4,524,322	+		GFF4533	0.13	-0.8
4,524,335	-		GFF4533	0.14	-2.0
4,524,348	-		GFF4533	0.15	-0.6
4,524,389	-		GFF4533	0.18	-1.9
4,524,398	+		GFF4533	0.18	+0.1
4,524,404	-		GFF4533	0.19	+0.0
4,524,406	-		GFF4533	0.19	-0.8
4,524,448	+		GFF4533	0.22	+0.2
4,524,456	-		GFF4533	0.22	-1.1
4,524,461	-		GFF4533	0.23	+0.9
4,524,487	-		GFF4533	0.25	-0.7
4,524,496	-		GFF4533	0.25	-2.5
4,524,496	-		GFF4533	0.25	-0.3
4,524,498	+		GFF4533	0.25	-0.9
4,524,501	-		GFF4533	0.26	-1.0
4,524,506	-		GFF4533	0.26	-0.2
4,524,515	-		GFF4533	0.27	-0.5
4,524,518	+		GFF4533	0.27	-1.7
4,524,526	+		GFF4533	0.27	-1.0
4,524,526	+		GFF4533	0.27	+0.1
4,524,526	-		GFF4533	0.27	-0.9
4,524,538	+		GFF4533	0.28	-1.7
4,524,541	-		GFF4533	0.28	+1.0
4,524,588	+		GFF4533	0.32	+0.8
4,524,602	+		GFF4533	0.33	-0.2
4,524,612	+		GFF4533	0.33	-0.4
4,524,637	+		GFF4533	0.35	-1.8
4,524,637	+		GFF4533	0.35	-0.9
4,524,642	+		GFF4533	0.35	-1.1
4,524,647	+		GFF4533	0.36	-2.7
4,524,647	+		GFF4533	0.36	-1.5
4,524,673	-		GFF4533	0.37	-0.8
4,524,679	-		GFF4533	0.38	-0.3
4,524,686	-		GFF4533	0.38	-0.4
4,524,695	+		GFF4533	0.39	-0.3
4,524,703	-		GFF4533	0.39	+0.4
4,524,703	-		GFF4533	0.39	-0.0
4,524,774	+		GFF4533	0.44	+0.5
4,524,787	+		GFF4533	0.45	+1.0
4,524,788	+		GFF4533	0.45	-0.9
4,524,795	-		GFF4533	0.46	-1.2
4,524,796	-		GFF4533	0.46	-0.7
4,524,804	+		GFF4533	0.46	+0.0
4,524,813	-		GFF4533	0.47	-1.0
4,524,813	-		GFF4533	0.47	+0.5
4,524,827	+		GFF4533	0.48	+0.0
4,524,827	-		GFF4533	0.48	-0.1
4,524,840	-		GFF4533	0.49	+0.3
4,524,898	+		GFF4533	0.53	+1.2
4,524,913	+		GFF4533	0.54	+0.2
4,524,929	+		GFF4533	0.55	+0.4
4,524,938	+		GFF4533	0.56	-0.9
4,524,938	+		GFF4533	0.56	-0.5
4,524,948	+		GFF4533	0.56	+0.8
4,524,991	+		GFF4533	0.59	-0.8
4,524,999	+		GFF4533	0.60	-1.1
4,524,999	+		GFF4533	0.60	-0.2
4,525,002	-		GFF4533	0.60	-0.5
4,525,002	-		GFF4533	0.60	-3.0
4,525,002	-		GFF4533	0.60	+1.0
4,525,007	-		GFF4533	0.60	+0.9
4,525,007	-		GFF4533	0.60	-0.0
4,525,007	-		GFF4533	0.60	-0.2
4,525,007	-		GFF4533	0.60	-0.1
4,525,007	-		GFF4533	0.60	+1.5
4,525,009	+		GFF4533	0.61	-1.0
4,525,020	-		GFF4533	0.61	-0.5
4,525,044	+		GFF4533	0.63	-1.4
4,525,045	-		GFF4533	0.63	+0.5