Strain Fitness in Sphingobium sp. HT1-2 around GFF4521

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,513,114	+		GFF4518	0.57	+0.5
4,513,132	-		GFF4518	0.65	-1.2
4,513,146	-		GFF4518	0.70	-1.7
4,513,175	-		GFF4518	0.82	+0.0
4,513,206	+				-0.3
4,513,229	+				-0.4
4,513,316	-				+0.4
4,513,379	+				+1.5
4,513,387	-				+0.2
4,513,427	-				-0.2
4,513,452	-				+1.2
4,513,463	+				+0.2
4,513,463	+				+0.4
4,513,463	+				-0.9
4,513,463	+				-1.2
4,513,471	-				-0.8
4,513,471	-				-0.9
4,513,471	-				+0.5
4,513,471	-				-0.0
4,513,471	-				+1.5
4,513,471	-				+1.7
4,513,471	-				-0.6
4,513,471	-				-0.7
4,513,471	-				+0.2
4,513,474	+				+0.0
4,513,482	-		GFF4519	0.12	+1.0
4,513,493	+		GFF4519	0.17	-1.1
4,513,493	+		GFF4519	0.17	+0.2
4,513,506	-		GFF4519	0.22	-0.1
4,513,506	-		GFF4519	0.22	-1.4
4,513,516	+		GFF4519	0.26	-0.2
4,513,521	+		GFF4519	0.28	-2.0
4,513,521	+		GFF4519	0.28	+0.8
4,513,524	-		GFF4519	0.29	-0.3
4,513,526	+		GFF4519	0.30	-0.2
4,513,529	-		GFF4519	0.31	-0.7
4,513,529	-		GFF4519	0.31	+1.5
4,513,534	-		GFF4519	0.33	-0.8
4,513,534	-		GFF4519	0.33	-0.2
4,513,540	-		GFF4519	0.36	-2.3
4,513,572	+		GFF4519	0.49	+1.0
4,513,574	+		GFF4519	0.50	+0.3
4,513,575	-		GFF4519	0.50	+0.5
4,513,580	-		GFF4519	0.52	+0.2
4,513,582	+		GFF4519	0.53	-0.0
4,513,582	+		GFF4519	0.53	+0.9
4,513,590	-		GFF4519	0.56	-0.2
4,513,590	-		GFF4519	0.56	-2.3
4,513,590	-		GFF4519	0.56	+0.3
4,513,617	+		GFF4519	0.67	-0.1
4,513,637	-		GFF4519	0.75	-0.5
4,513,661	-		GFF4519	0.85	+0.7
4,513,661	-		GFF4519	0.85	+0.1
4,513,661	-		GFF4519	0.85	-0.9
4,513,671	-		GFF4519	0.89	-1.1
4,513,675	+				-0.0
4,513,683	-				-0.5
4,513,683	-				-1.1
4,513,683	-				+1.3
4,513,735	+		GFF4520	0.11	-0.7
4,513,735	+		GFF4520	0.11	-0.7
4,513,735	+		GFF4520	0.11	-0.1
4,513,735	+		GFF4520	0.11	-0.4
4,513,735	+		GFF4520	0.11	+1.0
4,513,735	+		GFF4520	0.11	-0.9
4,513,735	+		GFF4520	0.11	-1.0
4,513,743	-		GFF4520	0.13	-2.1
4,513,743	-		GFF4520	0.13	+0.9
4,513,743	-		GFF4520	0.13	-0.6
4,513,743	-		GFF4520	0.13	+0.0
4,513,743	-		GFF4520	0.13	-0.2
4,513,743	-		GFF4520	0.13	-0.3
4,513,743	-		GFF4520	0.13	-0.5
4,513,743	-		GFF4520	0.13	-0.2
4,513,743	-		GFF4520	0.13	+0.3
4,513,743	-		GFF4520	0.13	-0.2
4,513,755	+		GFF4520	0.16	-0.5
4,513,755	+		GFF4520	0.16	-0.8
4,513,762	+		GFF4520	0.17	-1.4
4,513,770	-		GFF4520	0.19	-0.8
4,513,773	+		GFF4520	0.20	-0.8
4,513,781	-		GFF4520	0.22	+0.2
4,513,782	-		GFF4520	0.23	+0.2
4,513,784	+		GFF4520	0.23	-1.0
4,513,784	+		GFF4520	0.23	-0.5
4,513,789	+		GFF4520	0.24	-0.4
4,513,789	+		GFF4520	0.24	-0.3
4,513,792	-		GFF4520	0.25	+0.6
4,513,792	-		GFF4520	0.25	-0.5
4,513,806	-		GFF4520	0.29	+0.6
4,513,816	+		GFF4520	0.31	+0.9
4,513,834	+		GFF4520	0.36	-1.4
4,513,834	+		GFF4520	0.36	-0.7
4,513,841	-		GFF4520	0.38	+1.1
4,513,856	+		GFF4520	0.42	-0.7
4,513,867	+		GFF4520	0.44	-1.3
4,513,867	+		GFF4520	0.44	-0.3
4,513,868	+		GFF4520	0.45	+0.4
4,513,875	-		GFF4520	0.46	-0.3
4,513,882	-		GFF4520	0.48	+0.0
4,513,882	-		GFF4520	0.48	+0.4
4,513,897	+		GFF4520	0.52	+0.0
4,513,902	+		GFF4520	0.53	-1.3
4,513,902	+		GFF4520	0.53	-0.4
4,513,902	+		GFF4520	0.53	-0.2
4,513,907	+		GFF4520	0.55	+1.0
4,513,907	+		GFF4520	0.55	-1.1
4,513,907	+		GFF4520	0.55	-1.2
4,513,907	+		GFF4520	0.55	-0.2
4,513,910	-		GFF4520	0.55	+1.1
4,513,910	-		GFF4520	0.55	+1.6
4,513,916	-		GFF4520	0.57	-0.0
4,513,930	+		GFF4520	0.61	-0.0
4,513,930	+		GFF4520	0.61	-0.4
4,513,930	+		GFF4520	0.61	-1.4
4,513,930	+		GFF4520	0.61	-0.6
4,513,930	+		GFF4520	0.61	-1.1
4,513,930	+		GFF4520	0.61	-1.8
4,513,930	+		GFF4520	0.61	+0.0
4,513,930	+		GFF4520	0.61	+0.1
4,513,930	+		GFF4520	0.61	-0.0
4,513,930	+		GFF4520	0.61	+0.4
4,513,930	+		GFF4520	0.61	-0.8
4,513,930	+		GFF4520	0.61	-0.6
4,513,935	+		GFF4520	0.62	+0.4
4,513,938	-		GFF4520	0.63	+1.4
4,513,938	-		GFF4520	0.63	+0.8
4,513,938	-		GFF4520	0.63	-0.8
4,513,938	-		GFF4520	0.63	-2.2
4,513,949	+		GFF4520	0.65	+0.1
4,513,957	-		GFF4520	0.67	-1.9
4,513,996	+		GFF4520	0.77	+0.2
4,514,004	-		GFF4520	0.79	+0.2
4,514,006	+		GFF4520	0.80	-0.5
4,514,011	+		GFF4520	0.81	+0.2
4,514,011	+		GFF4520	0.81	-0.8
4,514,011	+		GFF4520	0.81	+0.5
4,514,019	-		GFF4520	0.83	-1.0
4,514,019	-		GFF4520	0.83	-1.8
4,514,019	-		GFF4520	0.83	-0.5
4,514,019	-		GFF4520	0.83	-0.2
4,514,019	-		GFF4520	0.83	+0.2
4,514,020	-		GFF4520	0.84	-0.8
4,514,074	+				+0.5
4,514,077	-				-0.4
4,514,091	+				-1.8
4,514,093	+				-1.7
4,514,093	+				-0.1
4,514,093	+				+0.1
4,514,093	+				+0.0
4,514,093	+				-0.7
4,514,099	+				-0.4
4,514,099	-				-1.5
4,514,099	-				-1.8
4,514,101	-				+0.7
4,514,105	+				-0.4
4,514,105	+				-0.1
4,514,105	-				-1.0
4,514,105	-				-0.2
4,514,107	-				-0.2
4,514,107	-				-0.9
4,514,113	-				-0.8
4,514,113	-				-0.3
4,514,113	-				+0.5
4,514,117	-		GFF4521	0.12	+2.1
4,514,121	+		GFF4521	0.15	+0.6
4,514,123	+		GFF4521	0.16	+1.5
4,514,128	-		GFF4521	0.20	+0.3
4,514,129	-		GFF4521	0.21	-2.7
4,514,131	+		GFF4521	0.22	-0.5
4,514,131	+		GFF4521	0.22	+0.0
4,514,131	-		GFF4521	0.22	-0.1
4,514,152	-		GFF4521	0.39	+0.3
4,514,198	+		GFF4521	0.74	-0.5
4,514,198	+		GFF4521	0.74	+0.5
4,514,198	+		GFF4521	0.74	-1.5
4,514,198	+		GFF4521	0.74	-1.7
4,514,198	+		GFF4521	0.74	+0.3
4,514,198	+		GFF4521	0.74	+0.2
4,514,198	+		GFF4521	0.74	-1.2
4,514,198	+		GFF4521	0.74	+0.5
4,514,198	+		GFF4521	0.74	+0.5
4,514,198	+		GFF4521	0.74	-2.4
4,514,198	+		GFF4521	0.74	+0.4
4,514,198	+		GFF4521	0.74	-0.7
4,514,198	+		GFF4521	0.74	+0.5
4,514,206	-		GFF4521	0.81	-0.2
4,514,206	-		GFF4521	0.81	-0.2
4,514,206	-		GFF4521	0.81	-0.8
4,514,206	-		GFF4521	0.81	-0.6
4,514,206	-		GFF4521	0.81	-0.5
4,514,206	-		GFF4521	0.81	-0.9
4,514,206	-		GFF4521	0.81	+1.0
4,514,206	-		GFF4521	0.81	-0.2
4,514,206	-		GFF4521	0.81	+0.2
4,514,206	-		GFF4521	0.81	-0.1
4,514,206	-		GFF4521	0.81	-2.1
4,514,206	-		GFF4521	0.81	-0.2
4,514,206	-		GFF4521	0.81	+1.6
4,514,206	-		GFF4521	0.81	+0.9
4,514,206	-		GFF4521	0.81	+0.6
4,514,206	-		GFF4521	0.81	+0.0
4,514,206	-		GFF4521	0.81	-1.5
4,514,206	-		GFF4521	0.81	-2.0
4,514,206	-		GFF4521	0.81	-1.4
4,514,208	+		GFF4521	0.82	+0.5
4,514,213	+		GFF4521	0.86	+1.3
4,514,213	+		GFF4521	0.86	-1.5
4,514,213	+		GFF4521	0.86	+0.2
4,514,213	+		GFF4521	0.86	-2.1
4,514,213	+		GFF4521	0.86	+0.1
4,514,213	+		GFF4521	0.86	+0.8
4,514,213	+		GFF4521	0.86	+0.1
4,514,213	+		GFF4521	0.86	-0.7
4,514,213	+		GFF4521	0.86	+0.2
4,514,213	+		GFF4521	0.86	+0.3
4,514,213	+		GFF4521	0.86	+0.3
4,514,213	+		GFF4521	0.86	+0.2
4,514,213	+		GFF4521	0.86	+0.4
4,514,213	+		GFF4521	0.86	-1.0
4,514,213	+		GFF4521	0.86	-0.9
4,514,213	+		GFF4521	0.86	+0.5
4,514,213	+		GFF4521	0.86	-1.7
4,514,213	+		GFF4521	0.86	-0.7
4,514,213	+		GFF4521	0.86	-1.1
4,514,213	+		GFF4521	0.86	+0.2
4,514,213	+		GFF4521	0.86	+0.5
4,514,213	+		GFF4521	0.86	+0.6
4,514,213	+		GFF4521	0.86	+0.2
4,514,213	+		GFF4521	0.86	+0.5
4,514,221	-				+0.5
4,514,221	-				-0.7
4,514,221	-				-0.3
4,514,221	-				+0.6
4,514,221	-				-0.5
4,514,221	-				-0.9
4,514,221	-				+0.4
4,514,221	-				-1.0
4,514,221	-				-0.3
4,514,221	-				+0.2
4,514,221	-				+1.5
4,514,221	-				+1.4
4,514,221	-				-0.9
4,514,221	-				+0.5
4,514,221	-				-0.5
4,514,228	+				-0.7
4,514,228	+				-0.2
4,514,236	-				-1.0
4,514,236	-				+0.3
4,514,236	-				-1.1
4,514,236	-				-0.3
4,514,236	-				+1.0
4,514,238	-				-1.3
4,514,251	+		GFF4522	0.15	+0.7
4,514,271	+		GFF4522	0.23	-0.9
4,514,313	-		GFF4522	0.40	+0.6
4,514,327	+		GFF4522	0.46	-0.5
4,514,338	+		GFF4522	0.50	+0.3
4,514,343	+		GFF4522	0.52	-1.0
4,514,346	-		GFF4522	0.53	-0.0
4,514,348	+		GFF4522	0.54	+0.5
4,514,348	+		GFF4522	0.54	+1.6
4,514,351	-		GFF4522	0.55	-0.2
4,514,353	+		GFF4522	0.56	+0.0
4,514,354	+		GFF4522	0.57	-0.4
4,514,380	-		GFF4522	0.67	-1.7
4,514,380	-		GFF4522	0.67	-0.4
4,514,391	+		GFF4522	0.72	-0.4
4,514,391	+		GFF4522	0.72	-0.1
4,514,412	+		GFF4522	0.80	+0.4
4,514,420	-		GFF4522	0.83	-1.2
4,514,421	-		GFF4522	0.84	+1.0
4,514,433	+		GFF4522	0.89	-1.3
4,514,433	+		GFF4522	0.89	+0.5
4,514,433	+		GFF4522	0.89	-0.0
4,514,436	-				-0.5
4,514,436	-				-0.2
4,514,439	+				+1.2
4,514,439	+				+0.5
4,514,439	+				-0.3
4,514,439	+				+0.1
4,514,439	+				+0.8
4,514,439	-				+0.6
4,514,447	-				-0.5
4,514,447	-				-0.1
4,514,447	-				-0.9
4,514,447	-				-0.5
4,514,447	-				-0.6
4,514,460	+				+0.0
4,514,470	-				-0.2
4,514,494	+				-1.9
4,514,510	+				+0.8
4,514,530	+				-2.0
4,514,530	+				-1.3
4,514,538	-				-1.0
4,514,539	-				-0.7
4,514,956	+				-0.6
4,514,959	+				-1.0
4,514,964	+				-1.1
4,514,979	+				-1.2
4,515,046	-				-1.7
4,515,055	-				+0.3
4,515,111	+				-0.9
4,515,164	-				-0.4