Strain Fitness in Sphingobium sp. HT1-2 around GFF4512

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,503,757	+		GFF4510	0.62	+1.0
4,503,765	-		GFF4510	0.63	-0.5
4,503,770	-		GFF4510	0.63	-2.0
4,503,770	-		GFF4510	0.63	-0.7
4,503,795	+		GFF4510	0.65	-0.4
4,503,818	+		GFF4510	0.67	-0.2
4,503,829	-		GFF4510	0.68	-0.3
4,503,871	-		GFF4510	0.72	-2.5
4,503,880	-		GFF4510	0.73	-0.1
4,503,883	+		GFF4510	0.73	+0.0
4,503,883	+		GFF4510	0.73	-0.3
4,503,883	+		GFF4510	0.73	-1.1
4,503,883	+		GFF4510	0.73	-1.1
4,503,884	+		GFF4510	0.73	+0.3
4,503,885	+		GFF4510	0.73	+0.4
4,503,891	-		GFF4510	0.74	+0.1
4,503,891	-		GFF4510	0.74	-2.0
4,503,891	-		GFF4510	0.74	-1.0
4,503,892	+		GFF4510	0.74	-0.0
4,503,892	+		GFF4510	0.74	-1.3
4,503,892	+		GFF4510	0.74	+0.2
4,503,893	+		GFF4510	0.74	+0.3
4,503,893	+		GFF4510	0.74	-1.3
4,503,893	-		GFF4510	0.74	+0.1
4,503,893	-		GFF4510	0.74	-2.3
4,503,900	-		GFF4510	0.74	-1.6
4,503,900	-		GFF4510	0.74	-0.7
4,503,901	-		GFF4510	0.75	-1.1
4,503,903	+		GFF4510	0.75	-0.4
4,503,906	+		GFF4510	0.75	+0.3
4,503,906	+		GFF4510	0.75	+0.3
4,503,911	+		GFF4510	0.75	+0.3
4,503,911	-		GFF4510	0.75	-0.1
4,503,914	-		GFF4510	0.76	-0.6
4,503,919	-		GFF4510	0.76	+1.4
4,503,921	+		GFF4510	0.76	-0.7
4,503,924	-		GFF4510	0.77	-0.7
4,503,967	-		GFF4510	0.80	-0.4
4,503,967	-		GFF4510	0.80	+1.5
4,503,978	-		GFF4510	0.81	-0.1
4,503,986	+		GFF4510	0.82	-0.9
4,503,986	+		GFF4510	0.82	-0.1
4,503,986	+		GFF4510	0.82	+0.0
4,503,986	+		GFF4510	0.82	-1.7
4,503,988	-		GFF4510	0.82	-1.4
4,503,994	-		GFF4510	0.83	-0.5
4,503,994	-		GFF4510	0.83	+1.2
4,504,000	+		GFF4510	0.83	-0.6
4,504,015	+		GFF4510	0.85	-0.2
4,504,015	+		GFF4510	0.85	+0.1
4,504,023	-		GFF4510	0.85	+0.1
4,504,053	-		GFF4510	0.88	+0.4
4,504,056	+		GFF4510	0.88	+1.4
4,504,083	-				+0.2
4,504,105	+				+0.0
4,504,105	+				+0.2
4,504,105	+				+0.4
4,504,105	+				+0.1
4,504,105	+				+0.4
4,504,105	+				-0.4
4,504,113	-				+0.3
4,504,113	-				+0.6
4,504,113	-				+0.0
4,504,113	-				-0.1
4,504,113	-				-0.6
4,504,113	-				+0.0
4,504,113	-				+0.7
4,504,113	-				-0.1
4,504,113	-				+0.3
4,504,120	+				+1.4
4,504,155	-				+0.5
4,504,164	+				+0.4
4,504,208	-				-0.6
4,504,209	-				-1.8
4,504,225	+				-1.4
4,504,246	+		GFF4511	0.10	+1.4
4,504,246	+		GFF4511	0.10	-1.4
4,504,247	-		GFF4511	0.10	+1.0
4,504,254	-		GFF4511	0.12	-0.0
4,504,256	+		GFF4511	0.12	+1.0
4,504,298	+		GFF4511	0.19	+0.5
4,504,298	+		GFF4511	0.19	-1.2
4,504,306	-		GFF4511	0.21	-1.6
4,504,306	-		GFF4511	0.21	-0.5
4,504,306	-		GFF4511	0.21	-2.3
4,504,306	-		GFF4511	0.21	-0.6
4,504,312	-		GFF4511	0.22	+1.0
4,504,366	+		GFF4511	0.31	-1.5
4,504,374	-		GFF4511	0.33	+0.5
4,504,376	+		GFF4511	0.33	-0.3
4,504,376	+		GFF4511	0.33	+1.1
4,504,376	+		GFF4511	0.33	+0.1
4,504,376	+		GFF4511	0.33	+0.3
4,504,384	-		GFF4511	0.34	+0.4
4,504,384	-		GFF4511	0.34	+0.4
4,504,384	-		GFF4511	0.34	+0.7
4,504,384	-		GFF4511	0.34	-0.6
4,504,390	-		GFF4511	0.35	-1.0
4,504,390	-		GFF4511	0.35	+0.2
4,504,397	+		GFF4511	0.37	+0.5
4,504,397	+		GFF4511	0.37	-0.8
4,504,398	-		GFF4511	0.37	-1.7
4,504,407	-		GFF4511	0.38	-0.4
4,504,409	+		GFF4511	0.39	+0.1
4,504,410	-		GFF4511	0.39	+0.6
4,504,416	+		GFF4511	0.40	-0.8
4,504,417	-		GFF4511	0.40	-1.5
4,504,451	+		GFF4511	0.46	+0.7
4,504,454	+		GFF4511	0.47	-0.9
4,504,454	+		GFF4511	0.47	-0.4
4,504,462	-		GFF4511	0.48	-0.7
4,504,468	+		GFF4511	0.49	-0.8
4,504,468	+		GFF4511	0.49	-0.4
4,504,468	+		GFF4511	0.49	+1.8
4,504,468	+		GFF4511	0.49	+1.1
4,504,468	+		GFF4511	0.49	+1.6
4,504,468	+		GFF4511	0.49	-0.0
4,504,468	+		GFF4511	0.49	-0.4
4,504,468	+		GFF4511	0.49	-0.2
4,504,468	+		GFF4511	0.49	+0.5
4,504,468	+		GFF4511	0.49	-0.1
4,504,468	+		GFF4511	0.49	-1.3
4,504,468	+		GFF4511	0.49	-0.9
4,504,468	+		GFF4511	0.49	+0.1
4,504,470	+		GFF4511	0.49	+1.1
4,504,476	-		GFF4511	0.50	-0.4
4,504,476	-		GFF4511	0.50	-0.4
4,504,476	-		GFF4511	0.50	-1.6
4,504,476	-		GFF4511	0.50	-0.3
4,504,476	-		GFF4511	0.50	-0.2
4,504,476	-		GFF4511	0.50	-0.7
4,504,476	-		GFF4511	0.50	+0.2
4,504,476	-		GFF4511	0.50	+1.0
4,504,476	-		GFF4511	0.50	+0.6
4,504,476	-		GFF4511	0.50	+0.6
4,504,476	-		GFF4511	0.50	-2.1
4,504,476	-		GFF4511	0.50	+1.2
4,504,476	-		GFF4511	0.50	+0.4
4,504,476	-		GFF4511	0.50	+1.4
4,504,476	-		GFF4511	0.50	-2.3
4,504,476	-		GFF4511	0.50	-0.3
4,504,478	+		GFF4511	0.51	-1.1
4,504,486	-		GFF4511	0.52	-0.8
4,504,486	-		GFF4511	0.52	-0.4
4,504,488	+		GFF4511	0.53	-1.3
4,504,488	+		GFF4511	0.53	-0.5
4,504,488	+		GFF4511	0.53	-0.8
4,504,488	+		GFF4511	0.53	-1.2
4,504,494	-		GFF4511	0.54	+1.2
4,504,496	-		GFF4511	0.54	-0.9
4,504,496	-		GFF4511	0.54	-0.0
4,504,496	-		GFF4511	0.54	-0.4
4,504,496	-		GFF4511	0.54	-0.4
4,504,507	+		GFF4511	0.56	+0.0
4,504,507	+		GFF4511	0.56	-1.0
4,504,507	+		GFF4511	0.56	-0.3
4,504,515	-		GFF4511	0.57	+0.4
4,504,515	-		GFF4511	0.57	-0.8
4,504,525	+		GFF4511	0.59	-0.5
4,504,538	-		GFF4511	0.61	-0.9
4,504,539	+		GFF4511	0.61	+0.3
4,504,571	+		GFF4511	0.67	-1.1
4,504,580	-		GFF4511	0.69	-1.1
4,504,605	+		GFF4511	0.73	-1.6
4,504,617	+		GFF4511	0.75	-0.9
4,504,637	+		GFF4511	0.79	+0.1
4,504,655	+		GFF4511	0.82	+1.1
4,504,655	+		GFF4511	0.82	-0.3
4,504,660	+		GFF4511	0.83	+0.5
4,504,663	-		GFF4511	0.83	+0.2
4,504,665	+		GFF4511	0.83	+0.4
4,504,686	+		GFF4511	0.87	-1.3
4,504,686	+		GFF4511	0.87	-1.0
4,504,686	+		GFF4511	0.87	-1.6
4,504,692	+		GFF4511	0.88	+0.4
4,504,692	+		GFF4511	0.88	+0.1
4,504,692	+		GFF4511	0.88	+0.1
4,504,692	+		GFF4511	0.88	-0.9
4,504,700	-		GFF4511	0.90	+0.6
4,504,700	-		GFF4511	0.90	-0.2
4,504,700	-		GFF4511	0.90	-0.2
4,504,700	-		GFF4511	0.90	+0.5
4,504,702	+				+1.1
4,504,702	+				-0.9
4,504,702	-				+0.6
4,504,702	-				-0.2
4,504,703	+				-0.1
4,504,703	+				-1.4
4,504,703	+				+0.4
4,504,703	+				-0.4
4,504,703	+				-1.4
4,504,703	+				-1.2
4,504,703	+				+1.0
4,504,703	+				+0.8
4,504,703	+				-0.1
4,504,703	+				+0.6
4,504,703	+				-1.2
4,504,703	+				-1.5
4,504,703	+				-0.4
4,504,703	+				+0.4
4,504,703	+				+0.6
4,504,703	+				-1.7
4,504,703	+				-0.1
4,504,703	+				-1.9
4,504,711	-				-2.7
4,504,711	-				+0.1
4,504,711	-				-0.1
4,504,711	-				-0.4
4,504,711	-				-1.6
4,504,711	-				+0.5
4,504,711	-				-2.9
4,504,711	-				-1.3
4,504,711	-				+0.1
4,504,711	-				+1.5
4,504,711	-				+1.6
4,504,711	-				-0.2
4,504,711	-				-0.6
4,504,711	-				+0.3
4,504,711	-				+0.1
4,504,711	-				-0.9
4,504,711	-				+0.1
4,504,711	-				+0.8
4,504,711	-				-0.6
4,504,711	-				-0.4
4,504,711	-				-0.9
4,504,711	-				-0.4
4,504,711	-				-0.5
4,504,711	-				+0.2
4,504,711	-				-1.2
4,504,711	-				+0.1
4,504,711	-				+0.2
4,504,711	-				+0.3
4,504,711	-				-1.4
4,504,711	-				-1.5
4,504,740	+				+0.1
4,504,740	+				-1.0
4,504,740	+				+0.4
4,504,740	+				+0.7
4,504,748	-				+0.1
4,504,748	-				-0.0
4,504,748	-				+0.2
4,504,748	-				+0.7
4,504,755	+				+0.3
4,504,756	-				+0.1
4,504,758	-				+0.3
4,504,762	-				+0.2
4,504,821	+				-0.6
4,504,821	+				+1.0
4,504,821	+				-1.7
4,504,824	-				+1.2
4,504,829	-				-3.0
4,504,829	-				-1.6
4,504,831	+				-0.7
4,504,838	+				-0.5
4,504,842	+		GFF4512	0.10	-0.7
4,504,842	+		GFF4512	0.10	+1.2
4,504,850	-		GFF4512	0.11	-0.2
4,504,850	-		GFF4512	0.11	-1.3
4,504,866	-		GFF4512	0.13	+0.4
4,504,896	-		GFF4512	0.17	+0.8
4,504,906	+		GFF4512	0.18	-0.3
4,504,906	+		GFF4512	0.18	-0.3
4,504,909	-		GFF4512	0.18	-0.2
4,504,914	-		GFF4512	0.19	-0.7
4,504,914	-		GFF4512	0.19	+0.3
4,504,914	-		GFF4512	0.19	-0.4
4,504,914	-		GFF4512	0.19	-0.2
4,504,914	-		GFF4512	0.19	+0.7
4,504,914	-		GFF4512	0.19	-0.1
4,504,914	-		GFF4512	0.19	-1.2
4,504,914	-		GFF4512	0.19	+0.0
4,504,914	-		GFF4512	0.19	-0.2
4,504,914	-		GFF4512	0.19	-1.8
4,504,914	-		GFF4512	0.19	+0.6
4,504,914	-		GFF4512	0.19	+0.3
4,504,914	-		GFF4512	0.19	+0.8
4,504,914	-		GFF4512	0.19	-1.6
4,504,916	-		GFF4512	0.19	-0.4
4,504,925	+		GFF4512	0.20	-0.6
4,504,933	-		GFF4512	0.21	-0.7
4,504,959	-		GFF4512	0.25	-1.4
4,504,964	-		GFF4512	0.25	-1.1
4,504,984	+		GFF4512	0.28	-0.8
4,504,985	-		GFF4512	0.28	-0.8
4,504,990	+		GFF4512	0.28	-0.8
4,505,029	+		GFF4512	0.33	+0.4
4,505,037	-		GFF4512	0.34	-0.2
4,505,044	+		GFF4512	0.35	-0.7
4,505,044	+		GFF4512	0.35	+1.2
4,505,047	+		GFF4512	0.35	+0.3
4,505,052	-		GFF4512	0.36	-1.8
4,505,065	-		GFF4512	0.37	+0.3
4,505,073	+		GFF4512	0.38	+0.0
4,505,081	-		GFF4512	0.39	+1.0
4,505,087	+		GFF4512	0.40	+0.6
4,505,133	+		GFF4512	0.46	-0.5
4,505,141	-		GFF4512	0.46	-0.4
4,505,177	-		GFF4512	0.51	+1.1
4,505,180	+		GFF4512	0.51	-0.5
4,505,183	+		GFF4512	0.52	-1.6
4,505,190	-		GFF4512	0.52	-0.6
4,505,202	+		GFF4512	0.54	-0.5
4,505,202	+		GFF4512	0.54	-1.3
4,505,202	+		GFF4512	0.54	+0.4
4,505,202	+		GFF4512	0.54	+0.5
4,505,203	+		GFF4512	0.54	-1.7
4,505,203	+		GFF4512	0.54	+1.2
4,505,203	+		GFF4512	0.54	-1.1
4,505,210	-		GFF4512	0.55	+0.8
4,505,210	-		GFF4512	0.55	+1.0
4,505,210	-		GFF4512	0.55	-0.1
4,505,210	-		GFF4512	0.55	+1.5
4,505,211	-		GFF4512	0.55	-0.6
4,505,211	-		GFF4512	0.55	+0.6
4,505,223	+		GFF4512	0.56	-0.1
4,505,223	+		GFF4512	0.56	-2.1
4,505,231	-		GFF4512	0.57	-1.5
4,505,231	-		GFF4512	0.57	-0.9
4,505,237	+		GFF4512	0.58	+0.7
4,505,253	-		GFF4512	0.60	-1.3
4,505,265	+		GFF4512	0.61	+0.8
4,505,270	+		GFF4512	0.62	-0.4
4,505,271	+		GFF4512	0.62	-0.3
4,505,271	+		GFF4512	0.62	-0.1
4,505,271	+		GFF4512	0.62	-0.0
4,505,273	-		GFF4512	0.62	-1.0
4,505,277	+		GFF4512	0.63	-1.9
4,505,278	-		GFF4512	0.63	-0.9
4,505,279	-		GFF4512	0.63	-0.5
4,505,279	-		GFF4512	0.63	-0.2
4,505,279	-		GFF4512	0.63	-0.1
4,505,279	-		GFF4512	0.63	-0.6
4,505,286	+		GFF4512	0.64	-1.6
4,505,288	+		GFF4512	0.64	-2.1
4,505,296	+		GFF4512	0.65	-0.8
4,505,296	-		GFF4512	0.65	+0.9
4,505,302	-		GFF4512	0.66	+0.2
4,505,362	+		GFF4512	0.73	+0.6
4,505,362	+		GFF4512	0.73	+0.1
4,505,390	+		GFF4512	0.77	+0.3
4,505,390	+		GFF4512	0.77	-2.0
4,505,398	-		GFF4512	0.78	-2.8
4,505,398	-		GFF4512	0.78	+1.2
4,505,405	+		GFF4512	0.78	+0.7
4,505,406	-		GFF4512	0.79	+1.2
4,505,430	-		GFF4512	0.81	-0.9
4,505,448	+		GFF4512	0.84	+0.1
4,505,463	-		GFF4512	0.85	+1.3
4,505,463	-		GFF4512	0.85	-0.9
4,505,482	-		GFF4512	0.88	-0.1
4,505,527	-				-0.5
4,505,527	-				-1.6
4,505,541	+				+1.2
4,505,563	+				-2.1
4,505,563	+				+0.3
4,505,563	+				+0.1
4,505,563	-				-0.5
4,505,571	-				-0.3
4,505,573	+				+0.5
4,505,583	-				-0.3
4,505,660	-				-0.5
4,505,667	+				-0.6
4,505,672	+				+0.6
4,505,679	+				-0.2
4,505,679	+				-1.4
4,505,682	-				+0.6
4,505,687	+				-0.1
4,505,692	+				-1.2
4,505,693	-				-1.0
4,505,699	+				-1.7
4,505,700	-				-1.7
4,505,708	-				-2.7
4,505,708	-				-1.7
4,505,715	-				+0.8
4,505,724	+				+0.7
4,505,733	-				+0.1
4,505,734	+				-1.0
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