Strain Fitness in Sphingobium sp. HT1-2 around GFF4501

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,493,869	-		GFF4500	0.51	+0.0
4,493,872	+		GFF4500	0.51	-0.5
4,493,872	+		GFF4500	0.51	-0.4
4,493,875	+		GFF4500	0.52	+0.0
4,493,880	-		GFF4500	0.52	+0.0
4,493,882	-		GFF4500	0.52	-0.4
4,493,884	+		GFF4500	0.52	-0.7
4,493,884	+		GFF4500	0.52	+0.3
4,493,884	+		GFF4500	0.52	-0.7
4,493,892	-		GFF4500	0.52	-1.5
4,493,928	-		GFF4500	0.54	-1.6
4,493,930	+		GFF4500	0.54	-0.1
4,493,930	+		GFF4500	0.54	+0.3
4,493,963	+		GFF4500	0.56	-0.1
4,493,963	+		GFF4500	0.56	-2.1
4,493,963	+		GFF4500	0.56	-0.6
4,493,963	+		GFF4500	0.56	-1.2
4,493,963	+		GFF4500	0.56	-0.5
4,493,963	+		GFF4500	0.56	-0.8
4,493,963	+		GFF4500	0.56	+0.4
4,493,963	+		GFF4500	0.56	-0.9
4,493,963	+		GFF4500	0.56	+0.4
4,493,963	+		GFF4500	0.56	+0.6
4,493,963	+		GFF4500	0.56	+1.0
4,493,963	+		GFF4500	0.56	-2.2
4,493,963	+		GFF4500	0.56	-1.4
4,493,963	+		GFF4500	0.56	-0.6
4,493,963	+		GFF4500	0.56	+0.1
4,493,963	+		GFF4500	0.56	+0.5
4,493,963	+		GFF4500	0.56	-0.6
4,493,963	+		GFF4500	0.56	-0.2
4,493,963	+		GFF4500	0.56	+0.6
4,493,963	+		GFF4500	0.56	-0.2
4,493,963	+		GFF4500	0.56	+0.2
4,493,963	+		GFF4500	0.56	+0.4
4,493,963	+		GFF4500	0.56	+0.4
4,493,963	+		GFF4500	0.56	-0.2
4,493,963	+		GFF4500	0.56	-0.9
4,493,963	+		GFF4500	0.56	-0.8
4,493,963	+		GFF4500	0.56	+1.8
4,493,963	+		GFF4500	0.56	+0.1
4,493,963	+		GFF4500	0.56	+0.2
4,493,963	+		GFF4500	0.56	-0.6
4,493,963	+		GFF4500	0.56	+1.5
4,493,963	+		GFF4500	0.56	-0.0
4,493,963	+		GFF4500	0.56	+0.4
4,493,963	+		GFF4500	0.56	+0.3
4,493,963	+		GFF4500	0.56	-0.6
4,493,963	+		GFF4500	0.56	-0.4
4,493,963	+		GFF4500	0.56	-0.6
4,493,963	+		GFF4500	0.56	+0.6
4,493,971	+		GFF4500	0.56	-0.2
4,493,971	+		GFF4500	0.56	-1.5
4,493,971	+		GFF4500	0.56	-0.0
4,493,971	-		GFF4500	0.56	-0.4
4,493,971	-		GFF4500	0.56	+0.1
4,493,971	-		GFF4500	0.56	+1.0
4,493,971	-		GFF4500	0.56	-1.6
4,493,971	-		GFF4500	0.56	+0.5
4,493,971	-		GFF4500	0.56	-0.5
4,493,971	-		GFF4500	0.56	-0.5
4,493,971	-		GFF4500	0.56	-0.5
4,493,971	-		GFF4500	0.56	+0.8
4,493,971	-		GFF4500	0.56	-1.0
4,493,971	-		GFF4500	0.56	+0.2
4,493,971	-		GFF4500	0.56	+0.7
4,493,971	-		GFF4500	0.56	-0.8
4,493,971	-		GFF4500	0.56	+0.5
4,493,971	-		GFF4500	0.56	-1.6
4,493,971	-		GFF4500	0.56	+0.6
4,493,971	-		GFF4500	0.56	-0.6
4,493,971	-		GFF4500	0.56	-0.4
4,493,971	-		GFF4500	0.56	-0.2
4,493,971	-		GFF4500	0.56	+0.2
4,493,971	-		GFF4500	0.56	-0.9
4,493,971	-		GFF4500	0.56	-0.6
4,493,971	-		GFF4500	0.56	-0.2
4,493,971	-		GFF4500	0.56	-1.9
4,493,971	-		GFF4500	0.56	-0.6
4,493,971	-		GFF4500	0.56	-0.5
4,493,971	-		GFF4500	0.56	+0.5
4,493,971	-		GFF4500	0.56	+0.4
4,493,971	-		GFF4500	0.56	+0.2
4,493,971	-		GFF4500	0.56	+1.3
4,493,971	-		GFF4500	0.56	+0.5
4,493,971	-		GFF4500	0.56	+0.3
4,493,971	-		GFF4500	0.56	+0.2
4,493,971	-		GFF4500	0.56	+0.3
4,493,971	-		GFF4500	0.56	+1.2
4,493,971	-		GFF4500	0.56	-0.2
4,493,971	-		GFF4500	0.56	-0.9
4,493,978	-		GFF4500	0.57	-1.2
4,493,997	-		GFF4500	0.58	-0.6
4,494,007	-		GFF4500	0.58	-0.5
4,494,015	-		GFF4500	0.59	-1.6
4,494,020	+		GFF4500	0.59	+0.8
4,494,025	+		GFF4500	0.59	+0.9
4,494,027	-		GFF4500	0.59	-0.8
4,494,028	-		GFF4500	0.59	-0.3
4,494,033	-		GFF4500	0.59	+0.6
4,494,033	-		GFF4500	0.59	-0.7
4,494,079	+		GFF4500	0.62	-1.5
4,494,079	+		GFF4500	0.62	+0.3
4,494,079	+		GFF4500	0.62	-0.5
4,494,079	+		GFF4500	0.62	+0.0
4,494,087	-		GFF4500	0.62	-0.3
4,494,087	-		GFF4500	0.62	-0.4
4,494,088	+		GFF4500	0.62	+0.7
4,494,096	-		GFF4500	0.63	-0.9
4,494,098	+		GFF4500	0.63	+0.5
4,494,100	+		GFF4500	0.63	+0.0
4,494,100	+		GFF4500	0.63	-0.3
4,494,110	+		GFF4500	0.63	+0.2
4,494,110	-		GFF4500	0.63	-1.6
4,494,120	-		GFF4500	0.64	-0.4
4,494,128	-		GFF4500	0.64	+0.8
4,494,142	-		GFF4500	0.65	-1.4
4,494,177	-		GFF4500	0.67	+0.0
4,494,184	-		GFF4500	0.67	-0.1
4,494,187	-		GFF4500	0.67	-0.7
4,494,203	+		GFF4500	0.68	+0.2
4,494,211	-		GFF4500	0.68	-2.3
4,494,211	-		GFF4500	0.68	-0.1
4,494,211	-		GFF4500	0.68	+1.4
4,494,211	-		GFF4500	0.68	-1.6
4,494,212	-		GFF4500	0.68	+0.6
4,494,214	+		GFF4500	0.68	+0.8
4,494,221	-		GFF4500	0.69	+0.7
4,494,221	-		GFF4500	0.69	+0.9
4,494,222	+		GFF4500	0.69	+0.2
4,494,223	+		GFF4500	0.69	-0.5
4,494,230	-		GFF4500	0.69	+0.6
4,494,232	-		GFF4500	0.69	+0.4
4,494,232	-		GFF4500	0.69	+0.8
4,494,242	-		GFF4500	0.70	-0.5
4,494,254	-		GFF4500	0.70	+1.1
4,494,276	-		GFF4500	0.71	-0.3
4,494,371	+		GFF4500	0.76	-2.7
4,494,394	+		GFF4500	0.77	-2.2
4,494,394	+		GFF4500	0.77	-0.7
4,494,394	+		GFF4500	0.77	+1.0
4,494,394	+		GFF4500	0.77	-0.4
4,494,394	+		GFF4500	0.77	-0.7
4,494,394	+		GFF4500	0.77	-0.1
4,494,394	+		GFF4500	0.77	-1.1
4,494,402	-		GFF4500	0.78	+0.1
4,494,402	-		GFF4500	0.78	-1.3
4,494,402	-		GFF4500	0.78	-0.3
4,494,402	-		GFF4500	0.78	-0.9
4,494,402	-		GFF4500	0.78	+0.0
4,494,402	-		GFF4500	0.78	+1.2
4,494,402	-		GFF4500	0.78	-0.1
4,494,402	-		GFF4500	0.78	+0.2
4,494,402	-		GFF4500	0.78	+0.1
4,494,402	-		GFF4500	0.78	-1.3
4,494,402	-		GFF4500	0.78	+0.6
4,494,402	-		GFF4500	0.78	+0.1
4,494,402	-		GFF4500	0.78	+0.2
4,494,402	-		GFF4500	0.78	-0.7
4,494,404	-		GFF4500	0.78	-0.7
4,494,420	+		GFF4500	0.79	-0.1
4,494,441	+		GFF4500	0.80	-0.7
4,494,447	-		GFF4500	0.80	+0.5
4,494,468	-		GFF4500	0.81	-0.1
4,494,477	+		GFF4500	0.81	-0.7
4,494,589	+		GFF4500	0.87	-1.5
4,494,597	-		GFF4500	0.87	+0.5
4,494,597	-		GFF4500	0.87	+0.9
4,494,603	-		GFF4500	0.88	-0.1
4,494,603	-		GFF4500	0.88	+0.7
4,494,603	-		GFF4500	0.88	+0.0
4,494,603	-		GFF4500	0.88	+0.5
4,494,603	-		GFF4500	0.88	-1.1
4,494,605	+		GFF4500	0.88	-0.2
4,494,608	-		GFF4500	0.88	+1.1
4,494,625	+		GFF4500	0.89	-0.7
4,494,633	-		GFF4500	0.89	+0.4
4,494,642	+		GFF4500	0.89	-0.5
4,494,650	-		GFF4500	0.90	-0.7
4,494,666	+				-1.2
4,494,677	-				-0.2
4,494,684	-				+0.4
4,494,684	-				-1.8
4,494,701	+				+1.2
4,494,703	+				+0.3
4,494,713	+				+0.7
4,494,721	-				-1.0
4,494,725	-				-0.8
4,494,735	+				-2.5
4,494,743	-				-0.9
4,494,761	+				+0.3
4,494,935	-				+0.3
4,494,935	-				-1.0
4,494,944	+				-1.6
4,494,946	+				-0.5
4,494,986	-		GFF4501	0.13	+0.0
4,495,048	+		GFF4501	0.20	-0.5
4,495,050	-		GFF4501	0.20	+0.5
4,495,050	-		GFF4501	0.20	+0.4
4,495,051	-		GFF4501	0.20	-1.5
4,495,053	+		GFF4501	0.21	-2.5
4,495,060	-		GFF4501	0.21	-0.5
4,495,062	+		GFF4501	0.22	-0.9
4,495,095	+		GFF4501	0.25	-0.1
4,495,112	+		GFF4501	0.27	+0.8
4,495,115	-		GFF4501	0.27	-1.1
4,495,115	-		GFF4501	0.27	+1.0
4,495,125	-		GFF4501	0.28	+0.5
4,495,130	-		GFF4501	0.29	+0.3
4,495,130	-		GFF4501	0.29	+0.2
4,495,150	-		GFF4501	0.31	-1.7
4,495,150	-		GFF4501	0.31	-1.5
4,495,184	-		GFF4501	0.35	-1.1
4,495,209	-		GFF4501	0.38	+0.3
4,495,213	-		GFF4501	0.38	-0.3
4,495,216	+		GFF4501	0.39	+1.2
4,495,223	+		GFF4501	0.39	-0.2
4,495,223	+		GFF4501	0.39	-1.0
4,495,223	+		GFF4501	0.39	-0.2
4,495,224	-		GFF4501	0.39	-0.5
4,495,231	-		GFF4501	0.40	-0.3
4,495,231	-		GFF4501	0.40	-0.9
4,495,231	-		GFF4501	0.40	+1.2
4,495,231	-		GFF4501	0.40	-0.7
4,495,236	-		GFF4501	0.41	-0.1
4,495,239	+		GFF4501	0.41	-0.5
4,495,242	-		GFF4501	0.41	-1.5
4,495,245	+		GFF4501	0.42	-0.8
4,495,323	+		GFF4501	0.50	-0.5
4,495,323	+		GFF4501	0.50	+0.1
4,495,331	-		GFF4501	0.51	-0.3
4,495,331	-		GFF4501	0.51	-1.4
4,495,341	+		GFF4501	0.52	+0.3
4,495,351	+		GFF4501	0.53	-0.1
4,495,351	+		GFF4501	0.53	+0.3
4,495,374	+		GFF4501	0.56	+0.0
4,495,390	+		GFF4501	0.58	-1.9
4,495,390	+		GFF4501	0.58	-1.2
4,495,392	-		GFF4501	0.58	-0.5
4,495,397	+		GFF4501	0.58	-0.5
4,495,405	-		GFF4501	0.59	+0.0
4,495,405	-		GFF4501	0.59	-0.2
4,495,407	+		GFF4501	0.60	-0.6
4,495,415	-		GFF4501	0.60	-2.4
4,495,416	-		GFF4501	0.61	-2.2
4,495,417	-		GFF4501	0.61	+1.2
4,495,417	-		GFF4501	0.61	-1.5
4,495,417	-		GFF4501	0.61	+1.0
4,495,417	-		GFF4501	0.61	-0.2
4,495,419	-		GFF4501	0.61	-0.1
4,495,421	+		GFF4501	0.61	-0.8
4,495,421	+		GFF4501	0.61	+0.7
4,495,427	+		GFF4501	0.62	-1.5
4,495,429	-		GFF4501	0.62	-2.1
4,495,429	-		GFF4501	0.62	+0.1
4,495,429	-		GFF4501	0.62	-0.9
4,495,429	-		GFF4501	0.62	+1.1
4,495,429	-		GFF4501	0.62	-0.6
4,495,435	-		GFF4501	0.63	-1.5
4,495,435	-		GFF4501	0.63	+0.2
4,495,435	-		GFF4501	0.63	-0.1
4,495,438	+		GFF4501	0.63	-0.8
4,495,449	-		GFF4501	0.64	+0.8
4,495,456	-		GFF4501	0.65	+0.4
4,495,460	-		GFF4501	0.65	+0.2
4,495,485	+		GFF4501	0.68	-1.0
4,495,490	+		GFF4501	0.69	-0.0
4,495,500	+		GFF4501	0.70	-0.9
4,495,500	+		GFF4501	0.70	+0.0
4,495,518	-		GFF4501	0.72	-0.3
4,495,522	+		GFF4501	0.72	-0.6
4,495,530	-		GFF4501	0.73	+1.7
4,495,538	-		GFF4501	0.74	+0.1
4,495,579	+		GFF4501	0.79	-0.6
4,495,588	+		GFF4501	0.80	+0.3
4,495,588	-		GFF4501	0.80	-0.5
4,495,596	-		GFF4501	0.80	-1.9
4,495,596	-		GFF4501	0.80	-0.5
4,495,607	+		GFF4501	0.82	-0.5
4,495,614	+		GFF4501	0.82	+0.0
4,495,614	+		GFF4501	0.82	-0.6
4,495,622	-		GFF4501	0.83	-1.2
4,495,622	-		GFF4501	0.83	-1.1
4,495,655	+		GFF4501	0.87	-0.1
4,495,663	+		GFF4501	0.88	-0.1
4,495,671	+		GFF4501	0.89	-3.0
4,495,671	-		GFF4501	0.89	-2.7
4,495,676	+		GFF4501	0.89	+0.2
4,495,676	+		GFF4501	0.89	-0.6
4,495,684	-				-0.6
4,495,692	+				-0.3
4,495,697	+				-2.9
4,495,697	+				-0.8
4,495,698	+				-0.5
4,495,701	-				-0.7
4,495,710	+				-0.1
4,495,710	+				+0.7
4,495,718	-				+0.4
4,495,744	-				-0.0
4,495,756	-				-0.2
4,495,766	+				+0.7
4,495,766	+				+0.0
4,495,766	+				+1.1
4,495,774	-				-0.6
4,495,776	+				+1.2
4,495,779	-				-0.7
4,495,794	+				+0.2
4,495,794	+				-0.8
4,495,794	+				+1.3
4,495,794	+				-0.1
4,495,794	+				-0.5
4,495,794	+				+0.5
4,495,802	-				+0.1
4,495,802	-				-0.1
4,495,802	-				-1.5
4,495,802	-				+1.8
4,495,802	-				+0.3
4,495,802	-				-1.0
4,495,802	-				+1.0
4,495,840	+				-0.3
4,495,848	-				-0.5
4,495,853	-				-0.5
4,495,853	-				-0.5
4,495,855	+				-1.9
4,495,899	+				+1.8
4,495,900	-				-0.2
4,495,907	-				+0.6
4,495,907	-				-0.1
4,495,938	-				-0.2
4,495,940	-				+0.4
4,495,941	+				-2.0
4,495,951	-				-0.2
4,495,966	+				-3.4
4,495,980	+				-0.8
4,495,987	-				-0.6
4,495,989	+				+1.3
4,495,994	+				-0.3
4,495,994	+				-0.1
4,495,994	+				-2.5
4,495,994	+				-0.8
4,495,994	+				+1.1
4,495,997	-				-1.8
4,496,002	-				+0.0
4,496,002	-				+0.4
4,496,002	-				+1.4
4,496,005	+				+0.8
4,496,005	+				-1.1
4,496,005	+				-0.2
4,496,005	+				-2.2
4,496,006	+				+0.1
4,496,013	-				-1.1
4,496,013	-				+0.4
4,496,013	-				-1.7
4,496,014	-				-0.7
4,496,019	-				+0.3
4,496,019	-				+0.4
4,496,019	-				-0.9
4,496,023	-				+0.7
4,496,042	-				-0.6
4,496,044	+				-1.7
4,496,044	+				+0.4
4,496,050	-				-0.3
4,496,052	+				-0.1
4,496,052	+				+0.5
4,496,059	+				-0.9
4,496,059	+				-1.2
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