Strain Fitness in Sphingobium sp. HT1-2 around GFF4486

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,478,611	-		GFF4484	0.83	+0.5
4,478,642	-		GFF4484	0.84	+1.2
4,478,681	+		GFF4484	0.86	-1.0
4,478,701	+		GFF4484	0.87	-0.9
4,478,701	+		GFF4484	0.87	-0.6
4,478,704	-		GFF4484	0.88	+1.3
4,478,707	-		GFF4484	0.88	-0.5
4,478,720	+		GFF4484	0.88	-1.0
4,478,722	-		GFF4484	0.88	-0.8
4,478,728	-		GFF4484	0.89	-0.0
4,478,760	-				+0.2
4,478,843	+				-0.6
4,478,872	-				+1.1
4,478,890	+				+0.6
4,478,895	+				+0.5
4,478,895	+				-0.5
4,478,898	-				+0.4
4,478,898	-				-0.5
4,478,900	+				-0.8
4,478,903	-				+0.7
4,478,903	-				+0.5
4,478,903	-				+1.1
4,478,927	+				-0.1
4,478,967	+				+0.6
4,478,967	+				-1.5
4,478,967	-				-0.2
4,478,967	-				-1.0
4,478,972	-				+0.1
4,478,994	+				+0.3
4,479,001	+				-1.0
4,479,008	-				+0.8
4,479,008	-				-0.7
4,479,008	-				-1.0
4,479,009	-				-2.2
4,479,009	-				+0.1
4,479,030	+				+0.1
4,479,032	+				-0.3
4,479,032	+				-0.3
4,479,032	+				-0.6
4,479,038	-				+0.5
4,479,040	-				+1.2
4,479,040	-				-0.2
4,479,053	+				-0.1
4,479,076	+				+0.1
4,479,085	+				+0.8
4,479,095	+		GFF4485	0.11	+0.5
4,479,096	-		GFF4485	0.11	+0.2
4,479,096	-		GFF4485	0.11	-0.9
4,479,114	-		GFF4485	0.14	+0.6
4,479,129	+		GFF4485	0.17	+0.8
4,479,129	+		GFF4485	0.17	-0.0
4,479,131	+		GFF4485	0.17	+1.3
4,479,136	+		GFF4485	0.18	-1.3
4,479,137	-		GFF4485	0.18	-0.3
4,479,152	+		GFF4485	0.21	+0.6
4,479,152	+		GFF4485	0.21	-0.6
4,479,152	+		GFF4485	0.21	+0.9
4,479,152	+		GFF4485	0.21	-0.4
4,479,152	+		GFF4485	0.21	-1.7
4,479,152	+		GFF4485	0.21	-0.3
4,479,152	+		GFF4485	0.21	+0.6
4,479,160	+		GFF4485	0.22	+0.9
4,479,160	-		GFF4485	0.22	+1.1
4,479,160	-		GFF4485	0.22	-0.2
4,479,160	-		GFF4485	0.22	-1.2
4,479,160	-		GFF4485	0.22	-0.7
4,479,165	+		GFF4485	0.23	+0.1
4,479,168	-		GFF4485	0.23	+0.7
4,479,175	-		GFF4485	0.25	+0.4
4,479,179	+		GFF4485	0.25	+0.7
4,479,222	-		GFF4485	0.33	+1.0
4,479,236	+		GFF4485	0.35	+1.7
4,479,236	+		GFF4485	0.35	+0.9
4,479,236	+		GFF4485	0.35	+0.4
4,479,244	-		GFF4485	0.37	-0.8
4,479,247	+		GFF4485	0.37	+0.9
4,479,270	-		GFF4485	0.41	+1.3
4,479,308	-		GFF4485	0.48	+0.6
4,479,318	+		GFF4485	0.50	+0.0
4,479,324	+		GFF4485	0.51	-0.1
4,479,324	-		GFF4485	0.51	+1.0
4,479,324	-		GFF4485	0.51	+0.1
4,479,326	-		GFF4485	0.51	+0.5
4,479,382	-		GFF4485	0.61	+0.7
4,479,418	+		GFF4485	0.67	-0.0
4,479,429	+		GFF4485	0.69	-0.5
4,479,434	+		GFF4485	0.70	-2.4
4,479,434	+		GFF4485	0.70	-0.5
4,479,442	-		GFF4485	0.71	-0.1
4,479,442	-		GFF4485	0.71	+0.8
4,479,442	-		GFF4485	0.71	-0.7
4,479,442	-		GFF4485	0.71	-0.3
4,479,478	-		GFF4485	0.77	+0.1
4,479,482	-		GFF4485	0.78	+0.4
4,479,489	-		GFF4485	0.79	-0.2
4,479,506	+		GFF4485	0.82	-1.7
4,479,514	-		GFF4485	0.84	-1.3
4,479,514	-		GFF4485	0.84	-0.6
4,479,514	-		GFF4485	0.84	-0.9
4,479,514	-		GFF4485	0.84	+0.5
4,479,514	-		GFF4485	0.84	-1.5
4,479,529	+		GFF4485	0.86	+1.7
4,479,577	-				+0.4
4,479,581	+				+0.5
4,479,581	+				+0.7
4,479,594	+				-0.4
4,479,594	+				+1.3
4,479,594	+				-1.2
4,479,594	-				+0.5
4,479,596	-				-1.3
4,479,602	-				+0.1
4,479,602	-				+0.8
4,479,602	-				-1.1
4,479,602	-				-2.4
4,479,602	-				-0.3
4,479,613	+				-0.6
4,479,621	-				-1.9
4,479,649	+		GFF4486	0.11	-1.0
4,479,649	+		GFF4486	0.11	+0.1
4,479,649	+		GFF4486	0.11	+0.7
4,479,649	+		GFF4486	0.11	-0.9
4,479,649	+		GFF4486	0.11	+0.3
4,479,649	+		GFF4486	0.11	-2.0
4,479,649	+		GFF4486	0.11	-0.2
4,479,649	+		GFF4486	0.11	-0.3
4,479,649	+		GFF4486	0.11	+0.1
4,479,649	+		GFF4486	0.11	-0.2
4,479,654	+		GFF4486	0.12	+0.3
4,479,657	-		GFF4486	0.12	+1.0
4,479,657	-		GFF4486	0.12	+0.2
4,479,657	-		GFF4486	0.12	+0.1
4,479,657	-		GFF4486	0.12	-0.6
4,479,657	-		GFF4486	0.12	-0.1
4,479,657	-		GFF4486	0.12	+1.3
4,479,657	-		GFF4486	0.12	+0.9
4,479,657	-		GFF4486	0.12	+0.1
4,479,657	-		GFF4486	0.12	-1.6
4,479,657	-		GFF4486	0.12	+0.5
4,479,657	-		GFF4486	0.12	+0.9
4,479,657	-		GFF4486	0.12	-0.8
4,479,657	-		GFF4486	0.12	-0.8
4,479,657	-		GFF4486	0.12	+0.0
4,479,657	-		GFF4486	0.12	+0.4
4,479,657	-		GFF4486	0.12	+1.1
4,479,659	+		GFF4486	0.13	+0.8
4,479,659	+		GFF4486	0.13	-1.6
4,479,662	-		GFF4486	0.13	+0.8
4,479,667	-		GFF4486	0.15	-0.8
4,479,680	-		GFF4486	0.18	-1.3
4,479,685	+		GFF4486	0.19	-1.0
4,479,693	-		GFF4486	0.21	-0.4
4,479,695	+		GFF4486	0.21	-0.1
4,479,734	-		GFF4486	0.30	+0.4
4,479,758	+		GFF4486	0.35	+0.4
4,479,759	+		GFF4486	0.36	-0.0
4,479,764	+		GFF4486	0.37	+1.1
4,479,772	-		GFF4486	0.39	-0.3
4,479,808	-		GFF4486	0.47	-0.8
4,479,829	-		GFF4486	0.52	-0.9
4,479,829	-		GFF4486	0.52	-0.2
4,479,850	+		GFF4486	0.56	-1.5
4,479,850	+		GFF4486	0.56	-0.1
4,479,850	+		GFF4486	0.56	-0.2
4,479,858	-		GFF4486	0.58	+0.4
4,479,877	-		GFF4486	0.63	-0.9
4,479,882	-		GFF4486	0.64	+0.5
4,479,912	+		GFF4486	0.71	-0.5
4,479,912	+		GFF4486	0.71	-1.9
4,479,912	+		GFF4486	0.71	-1.5
4,479,912	+		GFF4486	0.71	-0.9
4,479,920	-		GFF4486	0.72	-0.0
4,479,920	-		GFF4486	0.72	+1.6
4,479,920	-		GFF4486	0.72	+0.5
4,479,920	-		GFF4486	0.72	+1.7
4,479,920	-		GFF4486	0.72	-0.1
4,479,920	-		GFF4486	0.72	+1.3
4,479,920	-		GFF4486	0.72	+1.1
4,479,943	+		GFF4486	0.78	-0.2
4,479,943	+		GFF4486	0.78	+0.6
4,479,943	+		GFF4486	0.78	+1.7
4,479,943	+		GFF4486	0.78	+0.2
4,479,943	+		GFF4486	0.78	+0.9
4,479,943	+		GFF4486	0.78	-1.4
4,479,943	+		GFF4486	0.78	+0.3
4,479,943	+		GFF4486	0.78	+0.6
4,479,943	+		GFF4486	0.78	+0.1
4,479,943	+		GFF4486	0.78	+0.5
4,479,943	+		GFF4486	0.78	+0.5
4,479,943	+		GFF4486	0.78	+0.7
4,479,951	-		GFF4486	0.79	+0.7
4,479,951	-		GFF4486	0.79	+0.6
4,479,951	-		GFF4486	0.79	-0.7
4,479,951	-		GFF4486	0.79	+0.4
4,479,951	-		GFF4486	0.79	-1.8
4,479,951	-		GFF4486	0.79	-1.0
4,479,951	-		GFF4486	0.79	-0.7
4,479,980	-		GFF4486	0.86	+0.0
4,480,003	-				+0.7
4,480,010	-				-0.2
4,480,018	+				-0.8
4,480,047	+				-0.5
4,480,104	+		GFF4487	0.24	+0.1
4,480,112	-		GFF4487	0.27	+0.1
4,480,123	+		GFF4487	0.30	-0.4
4,480,123	+		GFF4487	0.30	+1.1
4,480,123	+		GFF4487	0.30	-0.3
4,480,123	+		GFF4487	0.30	-0.1
4,480,130	+		GFF4487	0.33	-2.1
4,480,131	-		GFF4487	0.33	+1.2
4,480,131	-		GFF4487	0.33	+0.4
4,480,143	+		GFF4487	0.38	+0.5
4,480,145	+		GFF4487	0.38	+0.2
4,480,148	+		GFF4487	0.39	+0.5
4,480,156	-		GFF4487	0.42	-0.3
4,480,156	-		GFF4487	0.42	+1.1
4,480,175	-		GFF4487	0.49	-0.8
4,480,200	+		GFF4487	0.58	-0.0
4,480,208	-		GFF4487	0.61	-0.3
4,480,227	+		GFF4487	0.67	-0.3
4,480,227	+		GFF4487	0.67	-0.8
4,480,227	+		GFF4487	0.67	+1.1
4,480,237	-		GFF4487	0.71	+0.7
4,480,243	+		GFF4487	0.73	+0.8
4,480,243	+		GFF4487	0.73	+0.4
4,480,247	-		GFF4487	0.74	-0.5
4,480,252	-		GFF4487	0.76	+1.4
4,480,252	-		GFF4487	0.76	-0.8
4,480,258	+		GFF4487	0.78	+1.5
4,480,261	-		GFF4487	0.79	-0.3
4,480,301	+				-2.3
4,480,309	-				-0.8
4,480,309	-				-0.3
4,480,309	-				-0.5
4,480,314	-				-0.8
4,480,314	-				-0.0
4,480,314	-				+0.8
4,480,325	+				+0.1
4,480,325	+				+1.0
4,480,333	-				-0.5
4,480,362	-				+0.9
4,480,365	+				-0.4
4,480,382	+				-0.2
4,480,382	+				-1.1
4,480,382	+				-1.6
4,480,382	+				-0.0
4,480,382	+				+0.2
4,480,382	+				-0.2
4,480,382	+				-0.4
4,480,382	+				+0.7
4,480,390	-				+0.7
4,480,390	-				+0.8
4,480,390	-				+0.3
4,480,395	+				-0.5
4,480,402	+				-0.2
4,480,403	-				+0.4
4,480,410	-				-0.1
4,480,410	-				-0.7
4,480,414	-				+2.1
4,480,416	+				+0.3
4,480,416	+				-1.3
4,480,424	-				-0.5
4,480,424	-				+0.2
4,480,424	-				+0.5
4,480,429	-				+0.2
4,480,429	-				-1.7
4,480,429	-				+0.3
4,480,429	-				-0.1
4,480,472	-				+1.3
4,480,487	-				+0.6
4,480,505	+				+1.9
4,480,507	-				+0.5
4,480,520	+		GFF4488	0.11	+0.5
4,480,520	+		GFF4488	0.11	+0.7
4,480,528	-		GFF4488	0.12	+0.1
4,480,528	-		GFF4488	0.12	-1.8
4,480,528	-		GFF4488	0.12	+0.4
4,480,528	-		GFF4488	0.12	+0.1
4,480,528	-		GFF4488	0.12	-0.2
4,480,528	-		GFF4488	0.12	-0.2
4,480,548	-		GFF4488	0.16	+0.9
4,480,561	-		GFF4488	0.18	+1.2
4,480,572	-		GFF4488	0.20	+0.1
4,480,584	+		GFF4488	0.22	+0.1
4,480,584	+		GFF4488	0.22	-0.5
4,480,584	+		GFF4488	0.22	+1.0
4,480,587	-		GFF4488	0.22	+0.6
4,480,592	-		GFF4488	0.23	+2.0
4,480,602	+		GFF4488	0.25	-0.7
4,480,610	-		GFF4488	0.26	+1.0
4,480,616	-		GFF4488	0.27	-1.2
4,480,634	+		GFF4488	0.30	-0.1
4,480,636	+		GFF4488	0.30	-0.2
4,480,636	+		GFF4488	0.30	+0.2
4,480,636	+		GFF4488	0.30	-0.5
4,480,641	+		GFF4488	0.31	-1.7
4,480,642	+		GFF4488	0.31	-1.7
4,480,642	-		GFF4488	0.31	+0.1
4,480,644	-		GFF4488	0.32	+0.9
4,480,644	-		GFF4488	0.32	-2.1
4,480,644	-		GFF4488	0.32	+0.1
4,480,644	-		GFF4488	0.32	+0.4
4,480,699	+		GFF4488	0.41	+0.2
4,480,699	+		GFF4488	0.41	-0.3
4,480,712	+		GFF4488	0.43	+0.6
4,480,714	+		GFF4488	0.44	+2.0
4,480,720	-		GFF4488	0.45	+0.2
4,480,728	-		GFF4488	0.46	-0.5
4,480,750	-		GFF4488	0.50	-0.1
4,480,755	-		GFF4488	0.50	+0.8
4,480,775	+		GFF4488	0.54	+0.6
4,480,777	+		GFF4488	0.54	+0.5
4,480,777	+		GFF4488	0.54	+1.3
4,480,778	-		GFF4488	0.54	+0.2
4,480,780	-		GFF4488	0.55	+0.9
4,480,782	+		GFF4488	0.55	+0.7
4,480,782	+		GFF4488	0.55	+0.3
4,480,782	+		GFF4488	0.55	-0.0
4,480,782	+		GFF4488	0.55	+0.5
4,480,782	+		GFF4488	0.55	+0.9
4,480,782	+		GFF4488	0.55	-0.5
4,480,784	+		GFF4488	0.55	-0.8
4,480,785	-		GFF4488	0.55	-0.1
4,480,790	-		GFF4488	0.56	+0.4
4,480,790	-		GFF4488	0.56	-0.2
4,480,797	+		GFF4488	0.57	-1.4
4,480,797	-		GFF4488	0.57	+0.6
4,480,797	-		GFF4488	0.57	-1.1
4,480,802	-		GFF4488	0.58	+0.2
4,480,818	+		GFF4488	0.61	+0.1
4,480,818	+		GFF4488	0.61	-0.1
4,480,819	+		GFF4488	0.61	-0.0
4,480,826	-		GFF4488	0.62	+0.5
4,480,837	-		GFF4488	0.64	+1.0
4,480,851	-		GFF4488	0.66	+0.6
4,480,902	+		GFF4488	0.75	-0.8
4,480,910	-		GFF4488	0.76	-1.7
4,480,910	-		GFF4488	0.76	-0.3
4,480,938	-		GFF4488	0.81	-0.4
4,480,976	+		GFF4488	0.87	+0.7
4,480,979	-		GFF4488	0.88	+1.2
4,480,979	-		GFF4488	0.88	+0.6
4,480,979	-		GFF4488	0.88	+1.5
4,480,984	-		GFF4488	0.89	+0.0
4,480,984	-		GFF4488	0.89	+1.1
4,480,994	+				-0.5
4,481,007	+				-0.4
4,481,007	+				+0.8
4,481,007	+				-1.0
4,481,035	+				+0.8