Strain Fitness in Sphingobium sp. HT1-2 around GFF4461

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,454,427	-				+0.1
4,454,474	+				+0.2
4,454,487	-				-0.5
4,454,488	+				-0.9
4,454,494	-				+0.8
4,454,509	+				-1.1
4,454,538	-				-0.5
4,454,545	+				-0.1
4,454,553	-				-0.6
4,454,556	+				-0.2
4,454,557	+				+0.1
4,454,565	-				-0.5
4,454,645	+				-0.2
4,454,645	+				+0.4
4,454,667	+				+0.0
4,454,675	-				+0.1
4,454,675	-				+1.2
4,454,677	-				+0.4
4,454,682	-				-1.1
4,454,701	+				+0.8
4,454,701	+				+0.1
4,454,709	-				-1.1
4,454,714	-				+0.4
4,454,714	-				-0.2
4,454,720	+				+0.1
4,454,728	-				+0.0
4,454,758	+		GFF4459	0.13	-0.3
4,454,769	-		GFF4459	0.16	-0.2
4,454,773	+		GFF4459	0.18	+0.4
4,454,799	+		GFF4459	0.27	-1.5
4,454,828	-		GFF4459	0.37	-0.1
4,454,837	+		GFF4459	0.40	-0.2
4,454,837	+		GFF4459	0.40	+0.1
4,454,845	+		GFF4459	0.43	-1.2
4,454,845	+		GFF4459	0.43	+0.9
4,454,845	-		GFF4459	0.43	-1.8
4,454,850	+		GFF4459	0.44	+0.3
4,454,850	+		GFF4459	0.44	-0.5
4,454,858	-		GFF4459	0.47	+0.3
4,454,858	-		GFF4459	0.47	-0.8
4,454,858	-		GFF4459	0.47	+1.7
4,454,858	-		GFF4459	0.47	-0.9
4,454,860	+		GFF4459	0.48	-1.4
4,454,860	+		GFF4459	0.48	-0.3
4,454,868	-		GFF4459	0.51	-0.5
4,454,908	-		GFF4459	0.64	+1.0
4,454,916	+		GFF4459	0.67	-0.1
4,454,947	-		GFF4459	0.78	+0.6
4,454,967	+		GFF4459	0.85	-1.6
4,455,019	-				-1.1
4,455,035	-				-0.6
4,455,039	-				+1.1
4,455,044	+				+0.3
4,455,075	+				-0.9
4,455,081	-				-0.5
4,455,106	-				+0.4
4,455,112	-				+1.1
4,455,118	+				+0.1
4,455,159	-				+1.2
4,455,185	-				-0.4
4,455,187	+				-0.1
4,455,230	+				-0.7
4,455,230	+				-0.9
4,455,238	-				+0.4
4,455,240	+		GFF4460	0.10	+0.0
4,455,248	-		GFF4460	0.17	-2.4
4,455,260	+		GFF4460	0.27	+0.0
4,455,326	-		GFF4460	0.84	-0.0
4,455,329	+		GFF4460	0.86	+0.1
4,455,337	-				+0.6
4,455,352	+				+0.1
4,455,388	+				-1.0
4,455,388	+				+0.9
4,455,393	+				+0.6
4,455,396	-				-1.0
4,455,396	-				+1.4
4,455,401	-				+0.3
4,455,441	-				-1.4
4,455,446	-				-1.0
4,455,455	+				-1.0
4,455,455	+				+1.1
4,455,455	+				+0.0
4,455,463	-				+0.1
4,455,463	-				-0.3
4,455,463	-				-0.9
4,455,463	-				+1.5
4,455,463	-				+0.6
4,455,463	-				+0.0
4,455,463	-				+1.1
4,455,490	-				-0.3
4,455,515	-				+0.4
4,455,522	-				+0.6
4,455,537	-				+0.4
4,455,542	+				+0.6
4,455,542	+				-0.1
4,455,542	+				+1.5
4,455,550	-				+0.8
4,455,566	+				-0.2
4,455,579	+				-1.1
4,455,664	+		GFF4461	0.14	-0.2
4,455,672	-		GFF4461	0.15	-0.5
4,455,672	-		GFF4461	0.15	-0.0
4,455,672	-		GFF4461	0.15	+0.1
4,455,672	-		GFF4461	0.15	-1.0
4,455,673	+		GFF4461	0.15	+0.8
4,455,682	-		GFF4461	0.15	-0.1
4,455,687	+		GFF4461	0.16	+0.7
4,455,710	+		GFF4461	0.17	-0.0
4,455,718	-		GFF4461	0.17	-0.4
4,455,718	-		GFF4461	0.17	+0.6
4,455,727	+		GFF4461	0.18	+0.8
4,455,741	+		GFF4461	0.19	-0.7
4,455,754	-		GFF4461	0.20	+0.5
4,455,770	+		GFF4461	0.21	+0.0
4,455,770	+		GFF4461	0.21	-1.3
4,455,770	+		GFF4461	0.21	+0.6
4,455,778	-		GFF4461	0.21	+1.0
4,455,782	+		GFF4461	0.21	+0.0
4,455,782	+		GFF4461	0.21	-0.4
4,455,782	+		GFF4461	0.21	+0.8
4,455,782	+		GFF4461	0.21	-0.6
4,455,790	-		GFF4461	0.22	+0.1
4,455,790	-		GFF4461	0.22	-1.0
4,455,790	-		GFF4461	0.22	+0.4
4,455,790	-		GFF4461	0.22	+0.1
4,455,790	-		GFF4461	0.22	-0.1
4,455,790	-		GFF4461	0.22	+0.3
4,455,829	-		GFF4461	0.24	+0.8
4,455,834	-		GFF4461	0.24	+0.4
4,455,844	-		GFF4461	0.25	+0.3
4,455,850	-		GFF4461	0.25	-0.7
4,455,867	+		GFF4461	0.26	-1.9
4,455,899	+		GFF4461	0.28	+0.5
4,455,911	-		GFF4461	0.29	-0.3
4,455,921	-		GFF4461	0.30	-0.3
4,455,939	-		GFF4461	0.31	-1.5
4,455,949	-		GFF4461	0.31	-2.5
4,455,950	+		GFF4461	0.31	-0.3
4,455,950	+		GFF4461	0.31	-1.4
4,455,973	+		GFF4461	0.33	-0.4
4,455,986	+		GFF4461	0.33	-0.8
4,455,986	+		GFF4461	0.33	+1.1
4,455,994	-		GFF4461	0.34	-1.1
4,455,994	-		GFF4461	0.34	+0.6
4,455,994	-		GFF4461	0.34	-0.3
4,456,006	-		GFF4461	0.35	+0.3
4,456,067	-		GFF4461	0.38	+1.1
4,456,088	+		GFF4461	0.39	+1.7
4,456,093	+		GFF4461	0.40	+0.0
4,456,096	-		GFF4461	0.40	-0.6
4,456,098	+		GFF4461	0.40	-0.4
4,456,098	+		GFF4461	0.40	-0.5
4,456,098	+		GFF4461	0.40	-1.2
4,456,098	+		GFF4461	0.40	+1.0
4,456,098	+		GFF4461	0.40	+0.5
4,456,098	+		GFF4461	0.40	+0.6
4,456,098	+		GFF4461	0.40	+0.6
4,456,098	+		GFF4461	0.40	-0.2
4,456,098	+		GFF4461	0.40	-1.0
4,456,098	+		GFF4461	0.40	-0.3
4,456,098	+		GFF4461	0.40	+0.2
4,456,098	+		GFF4461	0.40	-1.3
4,456,098	+		GFF4461	0.40	-0.6
4,456,101	-		GFF4461	0.40	-0.8
4,456,103	+		GFF4461	0.40	-0.6
4,456,106	-		GFF4461	0.41	+0.5
4,456,106	-		GFF4461	0.41	-0.7
4,456,106	-		GFF4461	0.41	+0.1
4,456,106	-		GFF4461	0.41	+0.1
4,456,106	-		GFF4461	0.41	+0.5
4,456,106	-		GFF4461	0.41	+0.3
4,456,106	-		GFF4461	0.41	+0.7
4,456,106	-		GFF4461	0.41	+1.2
4,456,106	-		GFF4461	0.41	-2.1
4,456,106	-		GFF4461	0.41	-0.9
4,456,106	-		GFF4461	0.41	-0.6
4,456,106	-		GFF4461	0.41	+1.0
4,456,106	-		GFF4461	0.41	-1.0
4,456,106	-		GFF4461	0.41	+1.6
4,456,106	-		GFF4461	0.41	+1.1
4,456,106	-		GFF4461	0.41	+0.4
4,456,106	-		GFF4461	0.41	-0.0
4,456,106	-		GFF4461	0.41	+0.8
4,456,106	-		GFF4461	0.41	-0.0
4,456,108	+		GFF4461	0.41	+1.5
4,456,116	-		GFF4461	0.41	+0.9
4,456,125	-		GFF4461	0.42	+0.4
4,456,140	+		GFF4461	0.43	-0.6
4,456,152	-		GFF4461	0.43	-0.2
4,456,159	-		GFF4461	0.44	-0.0
4,456,185	-		GFF4461	0.45	-0.9
4,456,225	+		GFF4461	0.48	-0.3
4,456,225	+		GFF4461	0.48	+0.6
4,456,233	-		GFF4461	0.48	-0.3
4,456,245	+		GFF4461	0.49	+0.2
4,456,323	-		GFF4461	0.53	-0.0
4,456,328	+		GFF4461	0.54	-0.2
4,456,363	-		GFF4461	0.56	-0.9
4,456,370	-		GFF4461	0.56	-1.7
4,456,423	-		GFF4461	0.59	-1.6
4,456,457	+		GFF4461	0.61	+0.6
4,456,457	+		GFF4461	0.61	+1.2
4,456,469	+		GFF4461	0.62	+0.1
4,456,470	-		GFF4461	0.62	+0.3
4,456,477	-		GFF4461	0.63	+0.1
4,456,483	+		GFF4461	0.63	-0.3
4,456,498	+		GFF4461	0.64	+0.6
4,456,500	+		GFF4461	0.64	-0.3
4,456,548	-		GFF4461	0.67	-0.6
4,456,548	-		GFF4461	0.67	-1.2
4,456,550	+		GFF4461	0.67	+0.5
4,456,556	+		GFF4461	0.67	+1.3
4,456,594	+		GFF4461	0.70	+0.6
4,456,594	+		GFF4461	0.70	+0.1
4,456,602	-		GFF4461	0.70	-0.5
4,456,621	+		GFF4461	0.71	-2.5
4,456,659	+		GFF4461	0.73	+0.5
4,456,659	+		GFF4461	0.73	-2.0
4,456,667	-		GFF4461	0.74	-0.9
4,456,667	-		GFF4461	0.74	-0.1
4,456,667	-		GFF4461	0.74	-0.6
4,456,745	+		GFF4461	0.78	-0.6
4,456,745	+		GFF4461	0.78	+0.7
4,456,751	+		GFF4461	0.79	+0.3
4,456,772	+		GFF4461	0.80	+0.4
4,456,790	+		GFF4461	0.81	-1.0
4,456,792	+		GFF4461	0.81	+0.8
4,456,800	-		GFF4461	0.82	-0.0
4,456,847	-		GFF4461	0.85	-0.1
4,456,908	+		GFF4461	0.88	-2.2
4,456,910	+		GFF4461	0.88	-0.3
4,456,914	-		GFF4461	0.89	+1.3
4,456,918	+		GFF4461	0.89	+0.2
4,456,961	+				+1.5
4,456,966	+				-0.0
4,456,978	+				+0.0
4,457,017	-				-0.0
4,457,024	+				-0.7
4,457,064	-				+0.1
4,457,064	-				+0.4
4,457,064	-				-0.4
4,457,064	-				+0.4
4,457,072	-				+0.2
4,457,077	+				-0.3
4,457,085	-				-0.8
4,457,105	+				+0.5
4,457,105	+				+0.1
4,457,113	-				+0.8
4,457,145	+				+0.4
4,457,145	+				-0.4
4,457,150	+				+0.7
4,457,175	-				-0.3
4,457,216	+				+0.3
4,457,216	+				-0.4
4,457,233	+				+0.9
4,457,267	+				+1.5
4,457,267	+				-1.5
4,457,273	-				+1.0
4,457,275	-				+0.1
4,457,275	-				+0.6
4,457,278	-				+0.2
4,457,278	-				-0.5
4,457,286	+				-1.9
4,457,336	+				-0.0
4,457,338	+				-0.7
4,457,339	-				-0.3
4,457,345	-				+0.5
4,457,355	-				-0.7
4,457,418	-				+1.0
4,457,443	+				-0.2
4,457,451	-				+0.5
4,457,482	+				-1.5
4,457,487	+				+0.8
4,457,512	-				+2.2
4,457,538	+				-0.4
4,457,538	+				+0.5
4,457,546	-				+0.1
4,457,559	+				+1.0
4,457,561	+				-0.2
4,457,561	+				-0.2
4,457,569	-				+0.9
4,457,569	-				-0.5
4,457,570	+				-2.1
4,457,580	+				+0.6
4,457,598	+				+0.5
4,457,612	-				-0.5
4,457,633	+				+0.1
4,457,633	+				+0.5
4,457,641	-				+0.2
4,457,641	-				+1.0
4,457,650	+				+0.6
4,457,673	-				+1.6
4,457,677	-				-0.7
4,457,689	-				+0.3
4,457,710	+				+0.1
4,457,713	-				+1.0
4,457,713	-				+0.1
4,457,713	-				-0.5
4,457,715	+				-0.0
4,457,731	+				+1.4
4,457,739	-				+0.5
4,457,739	-				+1.2
4,457,759	+				+0.1
4,457,764	+				-0.1
4,457,764	+				+0.0
4,457,798	+				+0.3
4,457,805	+				-0.7
4,457,811	-				-0.9
4,457,843	+				+1.5
4,457,843	+				+0.2
4,457,848	+				-0.3
4,457,848	+				-0.5
4,457,848	+				-1.4
4,457,848	+				+1.0
4,457,848	+				+0.3
4,457,848	+				-1.1
4,457,848	+				-0.5
4,457,848	+				-0.4
4,457,848	+				-2.0
4,457,848	+				-0.7
4,457,851	-				-2.0
4,457,851	-				+0.5
4,457,856	-				-1.1
4,457,856	-				-0.5
4,457,856	-				+0.5
4,457,856	-				+0.1
4,457,856	-				+1.1
4,457,856	-				-0.1
4,457,898	-				-0.4
4,457,900	+				-0.9
4,457,900	+				+0.7
4,457,900	+				-0.1
4,457,900	+				-1.0
4,457,908	-				-1.9
4,457,908	-				+1.3
4,457,908	-				+1.3
4,457,908	-				+0.6
4,457,908	-				+0.6
4,457,970	-				-1.0
4,457,980	-				+1.2
4,457,980	-				+1.3
4,457,998	+				-0.2
4,458,017	+				-1.6
4,458,027	+				+0.0
4,458,031	+				+0.0
4,458,031	+				+0.5
4,458,073	+		GFF4462	0.27	+0.5
4,458,094	+		GFF4462	0.39	-2.0
4,458,094	-		GFF4462	0.39	-0.5
4,458,099	-		GFF4462	0.42	-0.4
4,458,102	-		GFF4462	0.44	-0.7
4,458,104	+		GFF4462	0.45	+0.4
4,458,104	+		GFF4462	0.45	-0.5