Strain Fitness in Sphingobium sp. HT1-2 around GFF4460

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,454,263	-		GFF4458	0.66	+1.2
4,454,267	-		GFF4458	0.67	+0.7
4,454,267	-		GFF4458	0.67	+0.2
4,454,277	-		GFF4458	0.70	+0.4
4,454,279	+		GFF4458	0.70	+0.1
4,454,279	-		GFF4458	0.70	+0.9
4,454,282	-		GFF4458	0.71	+1.1
4,454,287	-		GFF4458	0.72	-0.3
4,454,288	+		GFF4458	0.73	+0.5
4,454,292	-		GFF4458	0.74	+0.5
4,454,292	-		GFF4458	0.74	+0.6
4,454,292	-		GFF4458	0.74	+0.0
4,454,309	+		GFF4458	0.78	-1.4
4,454,317	-		GFF4458	0.80	+0.6
4,454,317	-		GFF4458	0.80	-0.6
4,454,317	-		GFF4458	0.80	-0.9
4,454,317	-		GFF4458	0.80	-0.9
4,454,323	-		GFF4458	0.81	+0.4
4,454,325	+		GFF4458	0.82	-0.3
4,454,328	-		GFF4458	0.83	-0.0
4,454,344	+		GFF4458	0.87	-0.6
4,454,344	+		GFF4458	0.87	-0.2
4,454,352	-		GFF4458	0.89	+0.4
4,454,352	-		GFF4458	0.89	-0.2
4,454,352	-		GFF4458	0.89	+0.5
4,454,352	-		GFF4458	0.89	+0.8
4,454,352	-		GFF4458	0.89	+0.0
4,454,356	-		GFF4458	0.90	-1.8
4,454,361	+				+0.8
4,454,369	-				-1.0
4,454,369	-				+0.6
4,454,369	-				+0.8
4,454,390	-				-0.1
4,454,403	+				+0.2
4,454,403	-				-0.6
4,454,403	-				-0.5
4,454,403	-				+1.3
4,454,411	+				+0.4
4,454,427	-				+0.1
4,454,474	+				+0.2
4,454,487	-				-0.5
4,454,488	+				-0.9
4,454,494	-				+0.8
4,454,509	+				-1.1
4,454,538	-				-0.5
4,454,545	+				-0.1
4,454,553	-				-0.6
4,454,556	+				-0.2
4,454,557	+				+0.1
4,454,565	-				-0.5
4,454,645	+				-0.2
4,454,645	+				+0.4
4,454,667	+				+0.0
4,454,675	-				+0.1
4,454,675	-				+1.2
4,454,677	-				+0.4
4,454,682	-				-1.1
4,454,701	+				+0.8
4,454,701	+				+0.1
4,454,709	-				-1.1
4,454,714	-				+0.4
4,454,714	-				-0.2
4,454,720	+				+0.1
4,454,728	-				+0.0
4,454,758	+		GFF4459	0.13	-0.3
4,454,769	-		GFF4459	0.16	-0.2
4,454,773	+		GFF4459	0.18	+0.4
4,454,799	+		GFF4459	0.27	-1.5
4,454,828	-		GFF4459	0.37	-0.1
4,454,837	+		GFF4459	0.40	-0.2
4,454,837	+		GFF4459	0.40	+0.1
4,454,845	+		GFF4459	0.43	-1.2
4,454,845	+		GFF4459	0.43	+0.9
4,454,845	-		GFF4459	0.43	-1.8
4,454,850	+		GFF4459	0.44	+0.3
4,454,850	+		GFF4459	0.44	-0.5
4,454,858	-		GFF4459	0.47	+0.3
4,454,858	-		GFF4459	0.47	-0.8
4,454,858	-		GFF4459	0.47	+1.7
4,454,858	-		GFF4459	0.47	-0.9
4,454,860	+		GFF4459	0.48	-1.4
4,454,860	+		GFF4459	0.48	-0.3
4,454,868	-		GFF4459	0.51	-0.5
4,454,908	-		GFF4459	0.64	+1.0
4,454,916	+		GFF4459	0.67	-0.1
4,454,947	-		GFF4459	0.78	+0.6
4,454,967	+		GFF4459	0.85	-1.6
4,455,019	-				-1.1
4,455,035	-				-0.6
4,455,039	-				+1.1
4,455,044	+				+0.3
4,455,075	+				-0.9
4,455,081	-				-0.5
4,455,106	-				+0.4
4,455,112	-				+1.1
4,455,118	+				+0.1
4,455,159	-				+1.2
4,455,185	-				-0.4
4,455,187	+				-0.1
4,455,230	+				-0.7
4,455,230	+				-0.9
4,455,238	-				+0.4
4,455,240	+		GFF4460	0.10	+0.0
4,455,248	-		GFF4460	0.17	-2.4
4,455,260	+		GFF4460	0.27	+0.0
4,455,326	-		GFF4460	0.84	-0.0
4,455,329	+		GFF4460	0.86	+0.1
4,455,337	-				+0.6
4,455,352	+				+0.1
4,455,388	+				-1.0
4,455,388	+				+0.9
4,455,393	+				+0.6
4,455,396	-				-1.0
4,455,396	-				+1.4
4,455,401	-				+0.3
4,455,441	-				-1.4
4,455,446	-				-1.0
4,455,455	+				-1.0
4,455,455	+				+1.1
4,455,455	+				+0.0
4,455,463	-				+0.1
4,455,463	-				-0.3
4,455,463	-				-0.9
4,455,463	-				+1.5
4,455,463	-				+0.6
4,455,463	-				+0.0
4,455,463	-				+1.1
4,455,490	-				-0.3
4,455,515	-				+0.4
4,455,522	-				+0.6
4,455,537	-				+0.4
4,455,542	+				+0.6
4,455,542	+				-0.1
4,455,542	+				+1.5
4,455,550	-				+0.8
4,455,566	+				-0.2
4,455,579	+				-1.1
4,455,664	+		GFF4461	0.14	-0.2
4,455,672	-		GFF4461	0.15	-0.5
4,455,672	-		GFF4461	0.15	-0.0
4,455,672	-		GFF4461	0.15	+0.1
4,455,672	-		GFF4461	0.15	-1.0
4,455,673	+		GFF4461	0.15	+0.8
4,455,682	-		GFF4461	0.15	-0.1
4,455,687	+		GFF4461	0.16	+0.7
4,455,710	+		GFF4461	0.17	-0.0
4,455,718	-		GFF4461	0.17	-0.4
4,455,718	-		GFF4461	0.17	+0.6
4,455,727	+		GFF4461	0.18	+0.8
4,455,741	+		GFF4461	0.19	-0.7
4,455,754	-		GFF4461	0.20	+0.5
4,455,770	+		GFF4461	0.21	+0.0
4,455,770	+		GFF4461	0.21	-1.3
4,455,770	+		GFF4461	0.21	+0.6
4,455,778	-		GFF4461	0.21	+1.0
4,455,782	+		GFF4461	0.21	+0.0
4,455,782	+		GFF4461	0.21	-0.4
4,455,782	+		GFF4461	0.21	+0.8
4,455,782	+		GFF4461	0.21	-0.6
4,455,790	-		GFF4461	0.22	+0.1
4,455,790	-		GFF4461	0.22	-1.0
4,455,790	-		GFF4461	0.22	+0.4
4,455,790	-		GFF4461	0.22	+0.1
4,455,790	-		GFF4461	0.22	-0.1
4,455,790	-		GFF4461	0.22	+0.3
4,455,829	-		GFF4461	0.24	+0.8
4,455,834	-		GFF4461	0.24	+0.4
4,455,844	-		GFF4461	0.25	+0.3
4,455,850	-		GFF4461	0.25	-0.7
4,455,867	+		GFF4461	0.26	-1.9
4,455,899	+		GFF4461	0.28	+0.5
4,455,911	-		GFF4461	0.29	-0.3
4,455,921	-		GFF4461	0.30	-0.3
4,455,939	-		GFF4461	0.31	-1.5
4,455,949	-		GFF4461	0.31	-2.5
4,455,950	+		GFF4461	0.31	-0.3
4,455,950	+		GFF4461	0.31	-1.4
4,455,973	+		GFF4461	0.33	-0.4
4,455,986	+		GFF4461	0.33	-0.8
4,455,986	+		GFF4461	0.33	+1.1
4,455,994	-		GFF4461	0.34	-1.1
4,455,994	-		GFF4461	0.34	+0.6
4,455,994	-		GFF4461	0.34	-0.3
4,456,006	-		GFF4461	0.35	+0.3
4,456,067	-		GFF4461	0.38	+1.1
4,456,088	+		GFF4461	0.39	+1.7
4,456,093	+		GFF4461	0.40	+0.0
4,456,096	-		GFF4461	0.40	-0.6
4,456,098	+		GFF4461	0.40	-0.4
4,456,098	+		GFF4461	0.40	-0.5
4,456,098	+		GFF4461	0.40	-1.2
4,456,098	+		GFF4461	0.40	+1.0
4,456,098	+		GFF4461	0.40	+0.5
4,456,098	+		GFF4461	0.40	+0.6
4,456,098	+		GFF4461	0.40	+0.6
4,456,098	+		GFF4461	0.40	-0.2
4,456,098	+		GFF4461	0.40	-1.0
4,456,098	+		GFF4461	0.40	-0.3
4,456,098	+		GFF4461	0.40	+0.2
4,456,098	+		GFF4461	0.40	-1.3
4,456,098	+		GFF4461	0.40	-0.6
4,456,101	-		GFF4461	0.40	-0.8
4,456,103	+		GFF4461	0.40	-0.6
4,456,106	-		GFF4461	0.41	+0.5
4,456,106	-		GFF4461	0.41	-0.7
4,456,106	-		GFF4461	0.41	+0.1
4,456,106	-		GFF4461	0.41	+0.1
4,456,106	-		GFF4461	0.41	+0.5
4,456,106	-		GFF4461	0.41	+0.3
4,456,106	-		GFF4461	0.41	+0.7
4,456,106	-		GFF4461	0.41	+1.2
4,456,106	-		GFF4461	0.41	-2.1
4,456,106	-		GFF4461	0.41	-0.9
4,456,106	-		GFF4461	0.41	-0.6
4,456,106	-		GFF4461	0.41	+1.0
4,456,106	-		GFF4461	0.41	-1.0
4,456,106	-		GFF4461	0.41	+1.6
4,456,106	-		GFF4461	0.41	+1.1
4,456,106	-		GFF4461	0.41	+0.4
4,456,106	-		GFF4461	0.41	-0.0
4,456,106	-		GFF4461	0.41	+0.8
4,456,106	-		GFF4461	0.41	-0.0
4,456,108	+		GFF4461	0.41	+1.5
4,456,116	-		GFF4461	0.41	+0.9
4,456,125	-		GFF4461	0.42	+0.4
4,456,140	+		GFF4461	0.43	-0.6
4,456,152	-		GFF4461	0.43	-0.2
4,456,159	-		GFF4461	0.44	-0.0
4,456,185	-		GFF4461	0.45	-0.9
4,456,225	+		GFF4461	0.48	-0.3
4,456,225	+		GFF4461	0.48	+0.6
4,456,233	-		GFF4461	0.48	-0.3
4,456,245	+		GFF4461	0.49	+0.2
4,456,323	-		GFF4461	0.53	-0.0
4,456,328	+		GFF4461	0.54	-0.2