Strain Fitness in Sphingobium sp. HT1-2 around GFF4437

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,430,853	+		GFF4436	0.15	+0.7
4,430,853	+		GFF4436	0.15	-1.0
4,430,853	+		GFF4436	0.15	-0.6
4,430,853	+		GFF4436	0.15	-1.2
4,430,854	-		GFF4436	0.15	-1.4
4,430,861	-		GFF4436	0.15	+0.3
4,430,908	-		GFF4436	0.20	-0.2
4,430,917	-		GFF4436	0.20	-0.0
4,430,930	-		GFF4436	0.22	-1.9
4,430,932	+		GFF4436	0.22	-2.2
4,430,935	+		GFF4436	0.22	+1.5
4,430,961	+		GFF4436	0.24	+1.3
4,431,028	-		GFF4436	0.30	-0.7
4,431,047	+		GFF4436	0.32	+0.8
4,431,080	+		GFF4436	0.35	-0.4
4,431,090	+		GFF4436	0.36	+0.3
4,431,090	+		GFF4436	0.36	+0.4
4,431,095	+		GFF4436	0.37	+1.3
4,431,095	+		GFF4436	0.37	+0.2
4,431,095	+		GFF4436	0.37	-0.5
4,431,095	+		GFF4436	0.37	+0.3
4,431,095	+		GFF4436	0.37	+0.0
4,431,098	-		GFF4436	0.37	-0.7
4,431,098	-		GFF4436	0.37	-0.9
4,431,098	-		GFF4436	0.37	-0.2
4,431,103	-		GFF4436	0.37	+0.9
4,431,103	-		GFF4436	0.37	+0.7
4,431,134	+		GFF4436	0.40	-0.0
4,431,164	+		GFF4436	0.43	+0.6
4,431,164	+		GFF4436	0.43	-0.1
4,431,169	+		GFF4436	0.43	+0.4
4,431,172	-		GFF4436	0.43	-0.4
4,431,172	-		GFF4436	0.43	+0.7
4,431,172	-		GFF4436	0.43	-0.4
4,431,172	-		GFF4436	0.43	-0.1
4,431,172	-		GFF4436	0.43	-0.1
4,431,174	+		GFF4436	0.44	-0.7
4,431,177	-		GFF4436	0.44	-0.7
4,431,177	-		GFF4436	0.44	+0.0
4,431,177	-		GFF4436	0.44	+0.0
4,431,177	-		GFF4436	0.44	-0.1
4,431,182	-		GFF4436	0.44	-2.1
4,431,183	-		GFF4436	0.44	-0.3
4,431,233	+		GFF4436	0.49	+0.7
4,431,233	+		GFF4436	0.49	-0.7
4,431,233	+		GFF4436	0.49	-1.0
4,431,233	+		GFF4436	0.49	+0.0
4,431,233	+		GFF4436	0.49	-2.8
4,431,233	+		GFF4436	0.49	-2.5
4,431,238	+		GFF4436	0.49	-0.3
4,431,238	+		GFF4436	0.49	+0.8
4,431,238	+		GFF4436	0.49	-0.5
4,431,238	+		GFF4436	0.49	-0.3
4,431,238	+		GFF4436	0.49	-0.1
4,431,238	+		GFF4436	0.49	+0.2
4,431,238	+		GFF4436	0.49	+1.0
4,431,238	+		GFF4436	0.49	-0.7
4,431,238	+		GFF4436	0.49	-2.2
4,431,241	-		GFF4436	0.50	+0.4
4,431,245	+		GFF4436	0.50	-0.4
4,431,245	+		GFF4436	0.50	+0.0
4,431,246	-		GFF4436	0.50	-0.1
4,431,246	-		GFF4436	0.50	-0.7
4,431,246	-		GFF4436	0.50	-0.3
4,431,246	-		GFF4436	0.50	-0.3
4,431,246	-		GFF4436	0.50	-0.8
4,431,246	-		GFF4436	0.50	-0.3
4,431,246	-		GFF4436	0.50	-0.2
4,431,246	-		GFF4436	0.50	-1.6
4,431,285	+		GFF4436	0.54	-0.2
4,431,285	+		GFF4436	0.54	+1.0
4,431,285	+		GFF4436	0.54	-0.1
4,431,285	+		GFF4436	0.54	-0.1
4,431,285	+		GFF4436	0.54	-1.3
4,431,293	-		GFF4436	0.54	-0.9
4,431,293	-		GFF4436	0.54	-1.7
4,431,293	-		GFF4436	0.54	-1.8
4,431,293	-		GFF4436	0.54	-0.5
4,431,293	-		GFF4436	0.54	-0.6
4,431,293	-		GFF4436	0.54	-0.4
4,431,293	-		GFF4436	0.54	-1.0
4,431,303	+		GFF4436	0.55	+0.0
4,431,303	+		GFF4436	0.55	+0.2
4,431,303	+		GFF4436	0.55	-0.4
4,431,311	-		GFF4436	0.56	+0.2
4,431,311	-		GFF4436	0.56	-1.0
4,431,311	-		GFF4436	0.56	+0.1
4,431,311	-		GFF4436	0.56	-0.8
4,431,318	+		GFF4436	0.57	-0.9
4,431,337	+		GFF4436	0.58	-0.3
4,431,337	+		GFF4436	0.58	-0.7
4,431,345	-		GFF4436	0.59	-2.1
4,431,345	-		GFF4436	0.59	-0.4
4,431,345	-		GFF4436	0.59	+0.6
4,431,367	+		GFF4436	0.61	-1.0
4,431,368	-		GFF4436	0.61	-1.5
4,431,384	+		GFF4436	0.63	-1.2
4,431,419	-		GFF4436	0.66	-2.7
4,431,425	+		GFF4436	0.66	-1.3
4,431,425	-		GFF4436	0.66	+0.7
4,431,435	+		GFF4436	0.67	-0.5
4,431,435	+		GFF4436	0.67	-0.2
4,431,435	+		GFF4436	0.67	-1.0
4,431,435	+		GFF4436	0.67	+0.8
4,431,435	+		GFF4436	0.67	-0.7
4,431,435	+		GFF4436	0.67	-0.2
4,431,441	+		GFF4436	0.68	-0.5
4,431,443	-		GFF4436	0.68	-0.3
4,431,443	-		GFF4436	0.68	+1.1
4,431,453	+		GFF4436	0.69	-0.3
4,431,463	+		GFF4436	0.70	-0.3
4,431,469	+		GFF4436	0.70	-0.2
4,431,471	-		GFF4436	0.71	+0.5
4,431,477	-		GFF4436	0.71	-0.1
4,431,484	+		GFF4436	0.72	-0.1
4,431,492	-		GFF4436	0.72	-2.8
4,431,494	+		GFF4436	0.73	-1.8
4,431,499	+		GFF4436	0.73	+0.3
4,431,507	-		GFF4436	0.74	-1.1
4,431,539	+		GFF4436	0.77	-0.6
4,431,539	+		GFF4436	0.77	+0.0
4,431,539	+		GFF4436	0.77	-1.0
4,431,539	+		GFF4436	0.77	+1.0
4,431,545	-		GFF4436	0.77	-0.4
4,431,547	-		GFF4436	0.77	-0.3
4,431,547	-		GFF4436	0.77	+0.7
4,431,547	-		GFF4436	0.77	+0.2
4,431,565	+		GFF4436	0.79	+0.1
4,431,567	-		GFF4436	0.79	+0.5
4,431,567	-		GFF4436	0.79	+1.1
4,431,567	-		GFF4436	0.79	-1.5
4,431,593	-		GFF4436	0.82	-1.5
4,431,643	+		GFF4436	0.86	-2.2
4,431,650	-		GFF4436	0.87	+0.8
4,431,650	-		GFF4436	0.87	+0.2
4,431,672	+		GFF4436	0.89	+0.2
4,431,688	+				-0.7
4,431,689	+				-0.5
4,431,689	+				-0.3
4,431,689	+				+0.6
4,431,689	+				+0.3
4,431,689	+				-1.1
4,431,697	-				-1.8
4,431,697	-				+1.0
4,431,697	-				-0.5
4,431,697	-				-2.3
4,431,697	-				+0.2
4,431,697	-				-0.6
4,431,706	+				-0.5
4,431,706	+				+1.0
4,431,709	-				+0.6
4,431,714	-				+0.5
4,431,714	-				-0.5
4,431,714	-				+0.8
4,431,714	-				+0.7
4,431,720	-				+0.3
4,431,727	-				+0.2
4,431,746	+				+0.5
4,431,746	+				-0.7
4,431,754	-				-1.9
4,431,796	+				-0.4
4,431,796	+				-2.1
4,431,796	+				-1.5
4,431,796	+				+0.1
4,431,796	+				+1.6
4,431,796	+				-0.8
4,431,796	+				-0.2
4,431,796	+				+0.9
4,431,797	-				-0.5
4,431,797	-				-0.7
4,431,797	-				+0.4
4,431,804	-				-0.3
4,431,804	-				+0.0
4,431,804	-				-1.8
4,431,804	-				-0.3
4,431,804	-				-0.9
4,431,804	-				-0.9
4,431,804	-				-0.5
4,431,804	-				+0.6
4,431,804	-				+0.2
4,431,804	-				-0.7
4,431,815	+				-0.1
4,431,853	-				-0.7
4,431,856	+				+0.7
4,431,864	-				-1.9
4,431,879	+				-0.2
4,431,899	+				-1.3
4,431,907	-				-0.7
4,431,907	-				+0.7
4,431,920	+				-0.2
4,431,922	-				-2.0
4,431,929	-				-2.0
4,431,948	-				-0.1
4,431,955	-		GFF4437	0.10	-2.2
4,431,965	-		GFF4437	0.12	-0.8
4,431,990	-		GFF4437	0.14	-0.2
4,432,006	+		GFF4437	0.16	-1.5
4,432,057	+		GFF4437	0.21	-0.5
4,432,060	-		GFF4437	0.21	-1.1
4,432,067	+		GFF4437	0.22	-0.5
4,432,109	+		GFF4437	0.26	+1.3
4,432,134	-		GFF4437	0.29	-0.8
4,432,144	+		GFF4437	0.30	-0.2
4,432,180	+		GFF4437	0.33	-2.6
4,432,185	+		GFF4437	0.34	-0.1
4,432,186	-		GFF4437	0.34	+0.3
4,432,187	+		GFF4437	0.34	-1.1
4,432,188	-		GFF4437	0.34	+0.4
4,432,210	+		GFF4437	0.36	-2.0
4,432,234	+		GFF4437	0.39	-1.3
4,432,242	-		GFF4437	0.40	-0.2
4,432,267	+		GFF4437	0.42	-1.5
4,432,275	-		GFF4437	0.43	-1.1
4,432,277	+		GFF4437	0.43	-2.2
4,432,303	+		GFF4437	0.46	-0.1
4,432,303	+		GFF4437	0.46	+0.5
4,432,311	-		GFF4437	0.47	+0.1
4,432,311	-		GFF4437	0.47	-1.9
4,432,311	-		GFF4437	0.47	-0.2
4,432,311	-		GFF4437	0.47	+1.3
4,432,437	+		GFF4437	0.60	+0.5
4,432,445	-		GFF4437	0.60	-0.4
4,432,526	-		GFF4437	0.69	+0.5
4,432,527	+		GFF4437	0.69	-1.2
4,432,536	-		GFF4437	0.70	-1.8
4,432,545	-		GFF4437	0.71	-1.5
4,432,545	-		GFF4437	0.71	-2.6
4,432,547	-		GFF4437	0.71	-1.5
4,432,582	+		GFF4437	0.74	+1.1
4,432,597	+		GFF4437	0.76	-0.8
4,432,600	-		GFF4437	0.76	-1.7
4,432,602	+		GFF4437	0.76	+0.1
4,432,606	+		GFF4437	0.77	-1.1
4,432,663	+		GFF4437	0.83	+0.8
4,432,676	+		GFF4437	0.84	-0.2
4,432,683	+		GFF4437	0.85	+2.2
4,432,687	+		GFF4437	0.85	-1.7
4,432,687	+		GFF4437	0.85	-0.9
4,432,695	-		GFF4437	0.86	-2.2
4,432,713	+		GFF4437	0.88	-1.5
4,432,713	+		GFF4437	0.88	-0.8
4,432,713	+		GFF4437	0.88	-1.2
4,432,713	+		GFF4437	0.88	-1.9
4,432,721	-		GFF4437	0.89	-2.0
4,432,721	-		GFF4437	0.89	+0.0
4,432,721	-		GFF4437	0.89	-0.5
4,432,721	-		GFF4437	0.89	-0.2
4,432,721	-		GFF4437	0.89	-0.9
4,432,721	-		GFF4437	0.89	+0.9
4,432,726	-		GFF4437	0.89	+0.2
4,432,726	-		GFF4437	0.89	-0.2
4,432,736	+				-1.2
4,432,744	-				-0.3
4,432,751	-				-0.3
4,432,752	-				-0.5
4,432,754	+				-0.6
4,432,762	+				-0.1
4,432,762	-				+0.4
4,432,790	-				+0.0
4,432,801	-				-1.1
4,432,801	-				+0.1
4,432,801	-				-2.0
4,432,801	-				-0.7
4,432,806	+				+0.7
4,432,806	+				-1.9
4,432,816	+				-0.2
4,432,816	+				-1.7
4,432,816	+				-1.3
4,432,816	+				-0.9
4,432,820	-				-0.9
4,432,822	+				-1.1
4,432,824	-				-0.5
4,432,824	-				+0.1
4,432,830	-				+0.7
4,432,831	-				+0.1
4,432,836	+				+0.6
4,432,924	-				-1.0
4,432,933	-				+1.5
4,432,958	-				-0.7
4,432,970	-				-0.2
4,432,970	-				-1.8
4,433,044	+				+0.9
4,433,050	+				+0.3
4,433,053	+				-1.5
4,433,058	-				+0.4
4,433,058	-				-2.0
4,433,058	-				+0.1
4,433,060	+				-0.3
4,433,129	+				-1.6
4,433,129	+				+0.3
4,433,129	+				-1.4
4,433,129	+				-0.7
4,433,140	+				-2.1
4,433,145	-				-0.3
4,433,148	-				+0.8
4,433,148	-				+0.5
4,433,185	-		GFF4438	0.12	+0.7
4,433,221	+		GFF4438	0.15	-1.9
4,433,229	-		GFF4438	0.16	-0.1
4,433,229	-		GFF4438	0.16	-1.8
4,433,296	+		GFF4438	0.21	-0.6
4,433,302	+		GFF4438	0.22	-0.9
4,433,310	-		GFF4438	0.22	-2.2
4,433,310	-		GFF4438	0.22	-0.2
4,433,332	+		GFF4438	0.24	-0.4
4,433,346	-		GFF4438	0.25	-0.6
4,433,376	-		GFF4438	0.28	-2.0
4,433,376	-		GFF4438	0.28	-0.5
4,433,379	-		GFF4438	0.28	-0.1
4,433,417	+		GFF4438	0.31	-0.6
4,433,429	+		GFF4438	0.32	-1.5
4,433,446	-		GFF4438	0.34	-1.9
4,433,472	+		GFF4438	0.36	+0.2
4,433,472	+		GFF4438	0.36	+0.9
4,433,472	+		GFF4438	0.36	-1.5
4,433,472	+		GFF4438	0.36	-0.1
4,433,472	+		GFF4438	0.36	-1.2
4,433,472	+		GFF4438	0.36	+0.0
4,433,480	-		GFF4438	0.37	-0.1
4,433,480	-		GFF4438	0.37	-0.6
4,433,480	-		GFF4438	0.37	-1.9
4,433,480	-		GFF4438	0.37	+0.1
4,433,480	-		GFF4438	0.37	+0.3
4,433,545	-		GFF4438	0.42	-0.5
4,433,595	-		GFF4438	0.46	+0.6
4,433,616	+		GFF4438	0.48	+0.4
4,433,632	+		GFF4438	0.49	+0.9
4,433,640	-		GFF4438	0.50	-0.1
4,433,640	-		GFF4438	0.50	-1.8
4,433,642	+		GFF4438	0.50	+0.1
4,433,642	+		GFF4438	0.50	-2.1
4,433,650	-		GFF4438	0.51	+0.5
4,433,683	+		GFF4438	0.53	-1.2
4,433,688	+		GFF4438	0.54	-1.9
4,433,688	+		GFF4438	0.54	-0.3
4,433,688	+		GFF4438	0.54	-0.6
4,433,691	-		GFF4438	0.54	-1.6
4,433,698	+		GFF4438	0.55	-1.6
4,433,698	+		GFF4438	0.55	-1.3
4,433,698	+		GFF4438	0.55	+0.5
4,433,698	+		GFF4438	0.55	+0.4
4,433,698	+		GFF4438	0.55	-0.5
4,433,706	-		GFF4438	0.55	-1.8
4,433,706	-		GFF4438	0.55	-1.5
4,433,710	+		GFF4438	0.56	-1.8
4,433,711	-		GFF4438	0.56	-2.8
4,433,716	-		GFF4438	0.56	-0.2
4,433,752	-		GFF4438	0.59	-1.5