Strain Fitness in Sphingobium sp. HT1-2 around GFF4342

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,343,235	+		GFF4340	0.85	-0.1
4,343,237	-		GFF4340	0.86	-0.6
4,343,261	+		GFF4340	0.87	-0.7
4,343,264	-		GFF4340	0.88	-1.0
4,343,269	-		GFF4340	0.88	+0.4
4,343,269	-		GFF4340	0.88	+0.2
4,343,269	-		GFF4340	0.88	+0.4
4,343,269	-		GFF4340	0.88	+0.1
4,343,269	-		GFF4340	0.88	-2.3
4,343,269	-		GFF4340	0.88	-1.1
4,343,269	-		GFF4340	0.88	+0.5
4,343,269	-		GFF4340	0.88	-0.5
4,343,269	-		GFF4340	0.88	+1.0
4,343,279	-		GFF4340	0.89	-0.0
4,343,281	+		GFF4340	0.89	-1.5
4,343,335	+				-0.0
4,343,335	+				-0.1
4,343,341	-				-0.4
4,343,343	-				-1.0
4,343,343	-				-2.6
4,343,354	+				-0.4
4,343,354	+				+1.6
4,343,354	+				-1.3
4,343,354	+				-1.7
4,343,354	+				-0.5
4,343,354	+				+0.0
4,343,354	+				+0.4
4,343,354	+				+0.6
4,343,361	-				+0.7
4,343,362	-				+0.7
4,343,362	-				-0.7
4,343,362	-				+0.8
4,343,362	-				-0.0
4,343,362	-				-1.1
4,343,362	-				-2.7
4,343,362	-				+1.2
4,343,362	-				-0.5
4,343,362	-				-1.0
4,343,364	-				+0.3
4,343,376	-				+0.3
4,343,389	+				-0.2
4,343,408	-				-0.7
4,343,421	-				-0.1
4,343,442	+				-0.5
4,343,450	-				-1.4
4,343,454	+				-1.3
4,343,456	+				+0.2
4,343,462	-				+0.6
4,343,462	-				+0.0
4,343,462	-				-2.4
4,343,462	-				-0.3
4,343,464	-				-0.4
4,343,469	+				+0.5
4,343,482	+				+0.7
4,343,482	+				+1.2
4,343,489	+				-2.0
4,343,489	+				+0.3
4,343,490	-				-0.2
4,343,490	-				-0.1
4,343,490	-				+0.5
4,343,490	-				+1.2
4,343,490	-				-1.5
4,343,490	-				-0.7
4,343,490	-				-0.4
4,343,490	-				-0.3
4,343,490	-				-0.9
4,343,490	-				+0.5
4,343,505	-				-2.1
4,343,507	+				-0.3
4,343,509	+				-0.1
4,343,522	+				-0.0
4,343,529	-				-0.8
4,343,530	+				-0.4
4,343,530	+				+0.4
4,343,530	+				-0.8
4,343,531	-				+0.6
4,343,536	-				-2.0
4,343,538	-				+1.1
4,343,538	-				-0.6
4,343,538	-				-0.4
4,343,547	+				+0.3
4,343,552	+				+0.4
4,343,555	-				+1.4
4,343,555	-				+0.8
4,343,566	+				-2.9
4,343,587	+				-1.1
4,343,587	+				-0.7
4,343,587	+				-0.1
4,343,587	+				-0.7
4,343,595	-		GFF4341	0.10	-0.4
4,343,595	-		GFF4341	0.10	+1.2
4,343,595	-		GFF4341	0.10	-0.2
4,343,595	-		GFF4341	0.10	-0.1
4,343,623	-		GFF4341	0.14	+0.6
4,343,633	-		GFF4341	0.16	-1.3
4,343,642	-		GFF4341	0.17	-0.2
4,343,642	-		GFF4341	0.17	-2.0
4,343,649	+		GFF4341	0.18	+1.0
4,343,652	-		GFF4341	0.19	+0.6
4,343,725	+		GFF4341	0.29	-1.1
4,343,730	+		GFF4341	0.30	+0.2
4,343,743	+		GFF4341	0.32	-1.0
4,343,743	+		GFF4341	0.32	+1.3
4,343,743	+		GFF4341	0.32	-0.3
4,343,746	-		GFF4341	0.32	-0.1
4,343,748	+		GFF4341	0.33	+1.3
4,343,751	-		GFF4341	0.33	-1.2
4,343,751	-		GFF4341	0.33	+0.2
4,343,751	-		GFF4341	0.33	+0.5
4,343,751	-		GFF4341	0.33	-0.1
4,343,751	-		GFF4341	0.33	-0.6
4,343,751	-		GFF4341	0.33	+0.2
4,343,751	-		GFF4341	0.33	-0.2
4,343,751	-		GFF4341	0.33	+0.0
4,343,753	+		GFF4341	0.33	+1.0
4,343,756	-		GFF4341	0.34	-0.0
4,343,790	+		GFF4341	0.39	-1.3
4,343,825	+		GFF4341	0.44	+0.4
4,343,833	-		GFF4341	0.45	-1.0
4,343,834	-		GFF4341	0.45	+0.7
4,343,834	-		GFF4341	0.45	-0.5
4,343,847	+		GFF4341	0.47	-0.4
4,343,847	+		GFF4341	0.47	-0.2
4,343,847	+		GFF4341	0.47	+0.5
4,343,847	+		GFF4341	0.47	+0.1
4,343,847	+		GFF4341	0.47	-0.2
4,343,855	-		GFF4341	0.48	-0.2
4,343,877	+		GFF4341	0.51	-1.5
4,343,877	+		GFF4341	0.51	-1.0
4,343,888	-		GFF4341	0.53	+0.3
4,343,899	+		GFF4341	0.54	+1.3
4,343,902	-		GFF4341	0.55	-0.8
4,343,903	+		GFF4341	0.55	-0.6
4,343,903	+		GFF4341	0.55	+0.2
4,343,904	+		GFF4341	0.55	+0.8
4,343,913	+		GFF4341	0.57	+0.4
4,343,921	-		GFF4341	0.58	+0.2
4,343,921	-		GFF4341	0.58	+0.9
4,343,923	+		GFF4341	0.58	-1.1
4,343,923	+		GFF4341	0.58	+0.6
4,343,923	+		GFF4341	0.58	+0.5
4,343,923	+		GFF4341	0.58	-1.0
4,343,924	+		GFF4341	0.58	+0.5
4,343,931	+		GFF4341	0.59	+0.7
4,343,931	+		GFF4341	0.59	-0.4
4,343,931	-		GFF4341	0.59	-0.5
4,343,931	-		GFF4341	0.59	-0.6
4,343,931	-		GFF4341	0.59	-1.7
4,343,993	-		GFF4341	0.68	+0.4
4,344,002	+		GFF4341	0.69	-0.3
4,344,012	+		GFF4341	0.71	-0.4
4,344,030	-		GFF4341	0.73	-1.0
4,344,030	-		GFF4341	0.73	-1.4
4,344,037	+		GFF4341	0.74	-0.6
4,344,037	+		GFF4341	0.74	+1.4
4,344,045	-		GFF4341	0.76	+0.4
4,344,045	-		GFF4341	0.76	+0.2
4,344,056	-		GFF4341	0.77	-0.7
4,344,062	+		GFF4341	0.78	-0.0
4,344,062	+		GFF4341	0.78	-0.5
4,344,063	+		GFF4341	0.78	+1.1
4,344,070	-		GFF4341	0.79	+0.7
4,344,070	-		GFF4341	0.79	-1.6
4,344,070	-		GFF4341	0.79	+0.0
4,344,075	-		GFF4341	0.80	+0.5
4,344,075	-		GFF4341	0.80	-1.6
4,344,096	-		GFF4341	0.83	-0.4
4,344,110	+		GFF4341	0.85	-0.2
4,344,120	-		GFF4341	0.87	-0.5
4,344,125	-		GFF4341	0.87	-1.3
4,344,137	+		GFF4341	0.89	-0.6
4,344,137	+		GFF4341	0.89	-0.9
4,344,139	+		GFF4341	0.89	+1.1
4,344,147	+				-1.4
4,344,155	-				+0.5
4,344,155	-				-0.1
4,344,155	-				+0.3
4,344,155	-				-1.0
4,344,155	-				-0.1
4,344,155	-				-1.1
4,344,183	-				+0.2
4,344,184	+				+0.0
4,344,184	+				-1.2
4,344,191	+				-0.8
4,344,191	+				+1.5
4,344,192	-				-0.3
4,344,192	-				+0.7
4,344,199	-				+0.1
4,344,201	+				-1.2
4,344,201	+				-0.5
4,344,209	-				+0.2
4,344,216	-				-1.0
4,344,220	+				-0.1
4,344,229	+				-1.1
4,344,229	-				+1.5
4,344,240	+				-0.2
4,344,240	+				-0.3
4,344,256	+				-2.1
4,344,259	+				+0.3
4,344,261	+				-1.8
4,344,261	+				-1.8
4,344,261	+				-0.2
4,344,269	-				-0.1
4,344,269	-				-1.7
4,344,271	+				+0.9
4,344,271	+				+0.1
4,344,271	+				-2.0
4,344,271	+				-1.4
4,344,271	+				+0.8
4,344,271	+				+0.2
4,344,271	+				-0.6
4,344,271	+				+0.1
4,344,274	-				-1.0
4,344,279	-		GFF4342	0.10	-0.1
4,344,279	-		GFF4342	0.10	+0.7
4,344,279	-		GFF4342	0.10	-0.7
4,344,279	-		GFF4342	0.10	+0.2
4,344,279	-		GFF4342	0.10	-1.0
4,344,279	-		GFF4342	0.10	-2.0
4,344,321	+		GFF4342	0.17	-0.2
4,344,321	+		GFF4342	0.17	-1.1
4,344,329	-		GFF4342	0.18	+0.4
4,344,338	+		GFF4342	0.20	+0.5
4,344,340	+		GFF4342	0.20	+0.8
4,344,360	+		GFF4342	0.24	+0.8
4,344,368	-		GFF4342	0.25	-1.4
4,344,374	-		GFF4342	0.26	-1.3
4,344,375	+		GFF4342	0.26	-1.0
4,344,378	-		GFF4342	0.27	-0.2
4,344,385	+		GFF4342	0.28	-0.3
4,344,385	+		GFF4342	0.28	-0.6
4,344,385	+		GFF4342	0.28	+0.3
4,344,385	-		GFF4342	0.28	-0.4
4,344,388	-		GFF4342	0.28	+0.1
4,344,390	+		GFF4342	0.29	+0.6
4,344,390	+		GFF4342	0.29	-0.1
4,344,393	-		GFF4342	0.29	-0.9
4,344,393	-		GFF4342	0.29	+0.0
4,344,393	-		GFF4342	0.29	-0.9
4,344,393	-		GFF4342	0.29	-0.7
4,344,393	-		GFF4342	0.29	-0.4
4,344,393	-		GFF4342	0.29	-0.6
4,344,393	-		GFF4342	0.29	-0.4
4,344,398	-		GFF4342	0.30	-0.1
4,344,398	-		GFF4342	0.30	-1.4
4,344,408	+		GFF4342	0.32	+1.3
4,344,408	-		GFF4342	0.32	-1.3
4,344,411	-		GFF4342	0.32	-0.5
4,344,416	-		GFF4342	0.33	-2.6
4,344,421	-		GFF4342	0.34	+1.1
4,344,423	+		GFF4342	0.34	+0.4
4,344,431	-		GFF4342	0.35	-0.9
4,344,446	-		GFF4342	0.38	-1.2
4,344,454	-		GFF4342	0.39	+0.3
4,344,454	-		GFF4342	0.39	+0.1
4,344,476	+		GFF4342	0.43	+0.9
4,344,486	+		GFF4342	0.44	+0.7
4,344,486	+		GFF4342	0.44	-0.3
4,344,486	+		GFF4342	0.44	-1.6
4,344,486	+		GFF4342	0.44	+0.6
4,344,486	+		GFF4342	0.44	-0.6
4,344,489	-		GFF4342	0.45	-2.1
4,344,494	-		GFF4342	0.46	-1.5
4,344,494	-		GFF4342	0.46	-1.5
4,344,494	-		GFF4342	0.46	-0.5
4,344,494	-		GFF4342	0.46	-0.8
4,344,494	-		GFF4342	0.46	-0.1
4,344,494	-		GFF4342	0.46	-0.7
4,344,494	-		GFF4342	0.46	-0.9
4,344,495	+		GFF4342	0.46	+0.1
4,344,538	+		GFF4342	0.53	-1.4
4,344,562	+		GFF4342	0.57	-1.7
4,344,576	-		GFF4342	0.59	+0.9
4,344,588	+		GFF4342	0.61	-0.4
4,344,594	+		GFF4342	0.62	+0.7
4,344,596	-		GFF4342	0.63	+0.7
4,344,596	-		GFF4342	0.63	+0.3
4,344,596	-		GFF4342	0.63	-0.6
4,344,596	-		GFF4342	0.63	-0.3
4,344,596	-		GFF4342	0.63	+1.1
4,344,596	-		GFF4342	0.63	-2.1
4,344,596	-		GFF4342	0.63	+0.6
4,344,602	-		GFF4342	0.64	-0.4
4,344,602	-		GFF4342	0.64	-0.4
4,344,602	-		GFF4342	0.64	-0.1
4,344,609	+		GFF4342	0.65	+1.0
4,344,617	-		GFF4342	0.66	+0.1
4,344,623	+		GFF4342	0.67	+0.8
4,344,631	-		GFF4342	0.68	-0.1
4,344,631	-		GFF4342	0.68	-0.3
4,344,653	+		GFF4342	0.72	-1.1
4,344,653	+		GFF4342	0.72	-1.5
4,344,653	+		GFF4342	0.72	+0.1
4,344,653	+		GFF4342	0.72	+0.6
4,344,661	-		GFF4342	0.73	-0.5
4,344,661	-		GFF4342	0.73	+0.7
4,344,661	-		GFF4342	0.73	+0.9
4,344,661	-		GFF4342	0.73	-0.2
4,344,661	-		GFF4342	0.73	+0.1
4,344,661	-		GFF4342	0.73	-1.6
4,344,661	-		GFF4342	0.73	-0.1
4,344,689	+		GFF4342	0.78	-1.5
4,344,697	-		GFF4342	0.79	+0.8
4,344,705	-		GFF4342	0.81	-0.3
4,344,717	-		GFF4342	0.83	+1.3
4,344,725	+		GFF4342	0.84	+0.7
4,344,728	-		GFF4342	0.85	-0.5
4,344,733	-		GFF4342	0.85	+1.0
4,344,733	-		GFF4342	0.85	+0.3
4,344,755	-		GFF4342	0.89	-1.9
4,344,792	+				-1.0
4,344,805	-				-0.1
4,344,816	+				-1.0
4,344,816	+				-0.4
4,344,824	-				+0.1
4,344,824	-				-2.1
4,344,834	-				-1.0
4,344,842	+				-1.4
4,344,842	+				-0.6
4,344,850	-				-1.9
4,344,852	-				-1.6
4,344,860	-				-0.9
4,344,867	+				-0.2
4,344,867	+				+0.6
4,344,887	+				+0.4
4,344,906	+				-1.4
4,344,906	+				-0.7
4,344,914	-				+0.5
4,344,914	-				-1.4
4,344,914	-				-0.2
4,344,914	-				-1.1
4,344,914	-				+0.4
4,344,914	-				-0.4
4,344,921	+				-1.9
4,344,938	+		GFF4343	0.14	+0.9
4,344,938	+		GFF4343	0.14	+0.9
4,344,946	-		GFF4343	0.16	-1.2
4,344,951	-		GFF4343	0.17	-1.0
4,344,951	-		GFF4343	0.17	+0.0
4,344,965	+		GFF4343	0.21	-0.2
4,344,993	+		GFF4343	0.28	-3.5
4,344,993	+		GFF4343	0.28	-0.7
4,344,993	-		GFF4343	0.28	+0.8
4,344,998	+		GFF4343	0.29	-1.1
4,345,001	-		GFF4343	0.30	+0.0
4,345,003	+		GFF4343	0.30	-1.0
4,345,003	+		GFF4343	0.30	-0.5
4,345,003	+		GFF4343	0.30	-0.6
4,345,003	+		GFF4343	0.30	-0.1
4,345,003	+		GFF4343	0.30	-2.0
4,345,003	+		GFF4343	0.30	-0.6
4,345,003	+		GFF4343	0.30	+0.4
4,345,011	-		GFF4343	0.32	-0.5
4,345,011	-		GFF4343	0.32	+0.3
4,345,011	-		GFF4343	0.32	+0.7
4,345,011	-		GFF4343	0.32	-1.4
4,345,011	-		GFF4343	0.32	+0.8
4,345,011	-		GFF4343	0.32	+1.4
4,345,011	-		GFF4343	0.32	-1.5
4,345,011	-		GFF4343	0.32	-0.6
4,345,021	+		GFF4343	0.35	+0.5
4,345,021	+		GFF4343	0.35	+0.8
4,345,021	+		GFF4343	0.35	-0.2
4,345,024	-		GFF4343	0.35	-0.9
4,345,026	+		GFF4343	0.36	-0.7
4,345,026	+		GFF4343	0.36	+0.2
4,345,026	+		GFF4343	0.36	-1.6
4,345,026	+		GFF4343	0.36	-0.6
4,345,026	+		GFF4343	0.36	-2.0
4,345,029	+		GFF4343	0.37	-0.6
4,345,029	-		GFF4343	0.37	-0.3
4,345,029	-		GFF4343	0.37	+0.4
4,345,029	-		GFF4343	0.37	-0.7
4,345,031	+		GFF4343	0.37	-1.1
4,345,031	+		GFF4343	0.37	+1.1
4,345,031	+		GFF4343	0.37	+0.1
4,345,034	-		GFF4343	0.38	-1.3
4,345,034	-		GFF4343	0.38	-1.2
4,345,036	+		GFF4343	0.38	+0.7
4,345,036	+		GFF4343	0.38	+1.4
4,345,037	-		GFF4343	0.39	-2.0
4,345,039	-		GFF4343	0.39	+0.3
4,345,041	+		GFF4343	0.40	+0.5
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