Strain Fitness in Sphingobium sp. HT1-2 around GFF4309

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,315,673	+		GFF4307	0.47	+0.8
4,315,678	+		GFF4307	0.48	-0.6
4,315,706	+		GFF4307	0.53	+0.4
4,315,706	+		GFF4307	0.53	-0.3
4,315,706	+		GFF4307	0.53	+0.1
4,315,714	-		GFF4307	0.54	-1.0
4,315,714	-		GFF4307	0.54	-1.3
4,315,738	-		GFF4307	0.59	-0.3
4,315,743	-		GFF4307	0.60	+0.1
4,315,754	-		GFF4307	0.62	+0.4
4,315,764	-		GFF4307	0.64	-0.4
4,315,771	+		GFF4307	0.65	-0.5
4,315,783	-		GFF4307	0.67	-0.7
4,315,785	+		GFF4307	0.67	+0.8
4,315,789	-		GFF4307	0.68	+0.0
4,315,790	-		GFF4307	0.68	-0.3
4,315,799	+		GFF4307	0.70	-0.5
4,315,799	+		GFF4307	0.70	+0.9
4,315,806	+		GFF4307	0.71	-0.6
4,315,807	-		GFF4307	0.71	+0.2
4,315,807	-		GFF4307	0.71	-0.4
4,315,820	+		GFF4307	0.74	+1.1
4,315,834	+		GFF4307	0.76	+0.2
4,315,834	+		GFF4307	0.76	-1.6
4,315,834	+		GFF4307	0.76	+0.9
4,315,842	-		GFF4307	0.78	+0.2
4,315,848	+		GFF4307	0.79	+0.2
4,315,848	+		GFF4307	0.79	-0.3
4,315,866	+		GFF4307	0.82	+0.2
4,315,869	+		GFF4307	0.83	-0.3
4,315,869	-		GFF4307	0.83	-0.2
4,315,879	+		GFF4307	0.85	-0.2
4,315,882	+		GFF4307	0.85	-1.6
4,315,882	+		GFF4307	0.85	+0.7
4,315,887	-		GFF4307	0.86	-0.2
4,315,887	-		GFF4307	0.86	-1.4
4,315,892	+		GFF4307	0.87	-0.3
4,315,892	+		GFF4307	0.87	-0.9
4,315,892	+		GFF4307	0.87	-0.3
4,315,900	-		GFF4307	0.88	-1.8
4,315,900	-		GFF4307	0.88	-0.3
4,315,900	-		GFF4307	0.88	-1.9
4,315,903	-		GFF4307	0.89	-0.2
4,315,914	+				-0.0
4,315,926	-				-0.1
4,315,938	-				-0.5
4,315,940	+				-2.7
4,315,940	+				-1.5
4,315,940	+				-1.2
4,315,948	+				+0.3
4,315,948	-				-1.0
4,315,953	+				-0.7
4,315,974	+				+0.2
4,315,982	+				+0.5
4,315,982	+				+0.1
4,315,982	-				+0.3
4,315,983	-				-1.5
4,315,990	-				+0.4
4,316,001	+				-1.6
4,316,004	-				+0.4
4,316,010	+				-0.1
4,316,042	-				-1.3
4,316,042	-				-1.6
4,316,044	+				-0.1
4,316,044	+				-0.6
4,316,044	+				-1.5
4,316,052	-				-1.0
4,316,052	-				+0.3
4,316,054	+				-2.5
4,316,054	+				+1.2
4,316,062	-		GFF4308	0.11	+0.6
4,316,073	+		GFF4308	0.13	-0.9
4,316,074	+		GFF4308	0.13	+0.4
4,316,074	+		GFF4308	0.13	+0.5
4,316,075	-		GFF4308	0.13	-2.7
4,316,082	-		GFF4308	0.14	-1.0
4,316,082	-		GFF4308	0.14	+0.7
4,316,082	-		GFF4308	0.14	+1.5
4,316,082	-		GFF4308	0.14	-0.7
4,316,082	-		GFF4308	0.14	-0.6
4,316,092	+		GFF4308	0.15	-0.2
4,316,092	+		GFF4308	0.15	-0.4
4,316,092	+		GFF4308	0.15	-0.2
4,316,092	+		GFF4308	0.15	-2.3
4,316,092	+		GFF4308	0.15	-1.7
4,316,092	+		GFF4308	0.15	+0.8
4,316,092	+		GFF4308	0.15	-0.1
4,316,092	+		GFF4308	0.15	+0.3
4,316,092	+		GFF4308	0.15	-1.2
4,316,092	+		GFF4308	0.15	-0.7
4,316,092	+		GFF4308	0.15	-0.5
4,316,092	+		GFF4308	0.15	+0.8
4,316,092	+		GFF4308	0.15	-1.6
4,316,092	+		GFF4308	0.15	-0.4
4,316,092	+		GFF4308	0.15	-0.3
4,316,092	+		GFF4308	0.15	-0.2
4,316,092	+		GFF4308	0.15	-0.9
4,316,092	+		GFF4308	0.15	-1.4
4,316,092	+		GFF4308	0.15	+0.8
4,316,092	+		GFF4308	0.15	-0.1
4,316,092	+		GFF4308	0.15	-0.3
4,316,092	+		GFF4308	0.15	+1.1
4,316,092	+		GFF4308	0.15	-1.6
4,316,100	-		GFF4308	0.17	-0.6
4,316,100	-		GFF4308	0.17	-2.0
4,316,100	-		GFF4308	0.17	-1.3
4,316,100	-		GFF4308	0.17	-0.1
4,316,100	-		GFF4308	0.17	+1.1
4,316,100	-		GFF4308	0.17	-0.5
4,316,100	-		GFF4308	0.17	-0.5
4,316,100	-		GFF4308	0.17	-1.6
4,316,100	-		GFF4308	0.17	+0.3
4,316,100	-		GFF4308	0.17	-1.1
4,316,100	-		GFF4308	0.17	-0.2
4,316,100	-		GFF4308	0.17	-1.0
4,316,100	-		GFF4308	0.17	-1.5
4,316,100	-		GFF4308	0.17	+0.1
4,316,100	-		GFF4308	0.17	+1.4
4,316,100	-		GFF4308	0.17	-1.1
4,316,111	+		GFF4308	0.18	-1.1
4,316,111	+		GFF4308	0.18	+0.9
4,316,119	+		GFF4308	0.19	-0.5
4,316,119	+		GFF4308	0.19	-0.1
4,316,121	+		GFF4308	0.20	+0.4
4,316,136	-		GFF4308	0.22	+0.7
4,316,139	-		GFF4308	0.22	-0.7
4,316,179	+		GFF4308	0.28	+0.2
4,316,187	-		GFF4308	0.29	-1.2
4,316,187	-		GFF4308	0.29	+0.1
4,316,212	+		GFF4308	0.33	-0.1
4,316,222	+		GFF4308	0.34	-0.3
4,316,247	+		GFF4308	0.38	-0.7
4,316,250	-		GFF4308	0.38	-2.0
4,316,250	-		GFF4308	0.38	+1.0
4,316,250	-		GFF4308	0.38	-2.7
4,316,250	-		GFF4308	0.38	-0.1
4,316,258	-		GFF4308	0.40	-0.3
4,316,260	-		GFF4308	0.40	-0.1
4,316,270	+		GFF4308	0.41	+0.4
4,316,275	+		GFF4308	0.42	-2.0
4,316,278	-		GFF4308	0.43	-0.0
4,316,288	+		GFF4308	0.44	-0.2
4,316,293	+		GFF4308	0.45	-0.3
4,316,293	+		GFF4308	0.45	-0.4
4,316,303	+		GFF4308	0.46	-0.3
4,316,303	+		GFF4308	0.46	+0.1
4,316,303	+		GFF4308	0.46	-0.9
4,316,305	+		GFF4308	0.46	-0.9
4,316,306	-		GFF4308	0.47	-0.3
4,316,311	-		GFF4308	0.47	-1.2
4,316,311	-		GFF4308	0.47	+0.1
4,316,334	+		GFF4308	0.51	+1.3
4,316,334	+		GFF4308	0.51	+0.0
4,316,334	+		GFF4308	0.51	-0.0
4,316,334	+		GFF4308	0.51	-1.0
4,316,341	+		GFF4308	0.52	+0.3
4,316,342	-		GFF4308	0.52	-0.1
4,316,357	-		GFF4308	0.54	+0.5
4,316,364	+		GFF4308	0.55	-1.5
4,316,364	-		GFF4308	0.55	+0.7
4,316,373	+		GFF4308	0.56	-2.1
4,316,374	+		GFF4308	0.56	-0.5
4,316,381	-		GFF4308	0.57	-0.9
4,316,382	-		GFF4308	0.58	+0.2
4,316,387	-		GFF4308	0.58	+0.7
4,316,410	+		GFF4308	0.62	-2.3
4,316,434	+		GFF4308	0.65	+0.0
4,316,436	+		GFF4308	0.66	-0.1
4,316,444	-		GFF4308	0.67	-1.7
4,316,455	+		GFF4308	0.68	+0.1
4,316,456	-		GFF4308	0.68	+0.8
4,316,461	-		GFF4308	0.69	+0.8
4,316,465	+		GFF4308	0.70	-1.3
4,316,465	+		GFF4308	0.70	-1.5
4,316,473	+		GFF4308	0.71	+0.3
4,316,473	+		GFF4308	0.71	+0.3
4,316,473	+		GFF4308	0.71	+0.2
4,316,473	+		GFF4308	0.71	-0.1
4,316,473	+		GFF4308	0.71	-1.8
4,316,473	+		GFF4308	0.71	+0.1
4,316,473	+		GFF4308	0.71	-1.8
4,316,473	+		GFF4308	0.71	+0.5
4,316,473	+		GFF4308	0.71	+0.6
4,316,473	+		GFF4308	0.71	-1.6
4,316,473	+		GFF4308	0.71	-0.2
4,316,473	+		GFF4308	0.71	-0.5
4,316,473	+		GFF4308	0.71	+0.0
4,316,473	+		GFF4308	0.71	-0.7
4,316,473	-		GFF4308	0.71	-0.4
4,316,473	-		GFF4308	0.71	+1.0
4,316,481	-		GFF4308	0.72	+0.2
4,316,481	-		GFF4308	0.72	-1.1
4,316,481	-		GFF4308	0.72	+0.2
4,316,481	-		GFF4308	0.72	-0.1
4,316,481	-		GFF4308	0.72	+0.8
4,316,481	-		GFF4308	0.72	-0.3
4,316,481	-		GFF4308	0.72	-1.0
4,316,481	-		GFF4308	0.72	+0.3
4,316,481	-		GFF4308	0.72	-0.1
4,316,481	-		GFF4308	0.72	-0.7
4,316,481	-		GFF4308	0.72	+0.2
4,316,486	-		GFF4308	0.73	-0.9
4,316,486	-		GFF4308	0.73	-1.4
4,316,518	+		GFF4308	0.77	+0.8
4,316,518	+		GFF4308	0.77	-0.4
4,316,518	+		GFF4308	0.77	-0.1
4,316,518	+		GFF4308	0.77	+1.8
4,316,521	-		GFF4308	0.78	-0.7
4,316,523	+		GFF4308	0.78	+0.1
4,316,523	+		GFF4308	0.78	-0.4
4,316,526	-		GFF4308	0.79	-1.3
4,316,526	-		GFF4308	0.79	+0.6
4,316,528	+		GFF4308	0.79	+0.7
4,316,530	+		GFF4308	0.79	-0.3
4,316,531	-		GFF4308	0.79	-0.1
4,316,531	-		GFF4308	0.79	+0.5
4,316,538	-		GFF4308	0.80	-0.5
4,316,544	-		GFF4308	0.81	-0.9
4,316,544	-		GFF4308	0.81	+0.2
4,316,551	+		GFF4308	0.82	-0.1
4,316,553	+		GFF4308	0.83	-0.4
4,316,553	+		GFF4308	0.83	-0.8
4,316,560	+		GFF4308	0.84	+1.7
4,316,561	-		GFF4308	0.84	+1.1
4,316,584	+		GFF4308	0.87	-2.3
4,316,591	+		GFF4308	0.88	+0.4
4,316,617	+				-0.7
4,316,644	+				-1.6
4,316,644	+				-0.9
4,316,644	+				-0.6
4,316,644	+				-1.2
4,316,644	+				+0.7
4,316,644	+				-2.0
4,316,644	+				-3.3
4,316,644	+				-0.2
4,316,644	+				+0.6
4,316,644	+				-0.6
4,316,652	-				-1.0
4,316,652	-				+0.1
4,316,652	-				-0.4
4,316,652	-				-1.4
4,316,652	-				-1.4
4,316,653	-				+0.1
4,316,671	-				+0.4
4,316,698	-				+1.1
4,316,736	+		GFF4309	0.19	-1.7
4,316,738	-		GFF4309	0.19	-0.8
4,316,748	+		GFF4309	0.22	-0.5
4,316,778	+		GFF4309	0.30	-1.5
4,316,781	-		GFF4309	0.31	+0.6
4,316,824	-		GFF4309	0.42	+0.5
4,316,833	-		GFF4309	0.44	-0.6
4,316,891	+		GFF4309	0.60	-1.5
4,316,900	+		GFF4309	0.62	-0.1
4,316,908	-		GFF4309	0.64	-1.5
4,316,908	-		GFF4309	0.64	-0.0
4,316,925	+		GFF4309	0.69	-0.4
4,316,935	+		GFF4309	0.71	-2.1
4,316,938	+		GFF4309	0.72	+1.2
4,316,938	-		GFF4309	0.72	+1.3
4,316,941	-		GFF4309	0.73	+0.3
4,316,943	+		GFF4309	0.74	+0.7
4,316,943	+		GFF4309	0.74	+0.1
4,316,945	+		GFF4309	0.74	+0.3
4,316,948	+		GFF4309	0.75	-0.7
4,316,948	+		GFF4309	0.75	-0.7
4,316,948	-		GFF4309	0.75	-2.1
4,316,948	-		GFF4309	0.75	-0.2
4,316,950	+		GFF4309	0.75	-0.2
4,316,951	-		GFF4309	0.76	+0.5
4,316,951	-		GFF4309	0.76	-0.3
4,316,955	+		GFF4309	0.77	+0.3
4,316,956	-		GFF4309	0.77	-1.2
4,316,956	-		GFF4309	0.77	-2.5
4,316,956	-		GFF4309	0.77	-0.6
4,316,958	-		GFF4309	0.78	-0.5
4,316,958	-		GFF4309	0.78	+0.8
4,316,965	+		GFF4309	0.79	+0.9
4,316,989	+		GFF4309	0.86	-0.0
4,317,011	-				-0.5
4,317,019	+				+0.7
4,317,025	-				-0.1
4,317,026	+				+0.2
4,317,027	-				-0.2
4,317,027	-				+0.8
4,317,034	-				-0.5
4,317,081	+				-0.6
4,317,094	+				-0.7
4,317,094	+				+0.6
4,317,115	+				-1.2
4,317,127	+				-0.6
4,317,127	+				-0.3
4,317,135	-				+0.6
4,317,165	+				-0.4
4,317,165	+				-0.5
4,317,165	+				+0.2
4,317,165	+				-0.1
4,317,165	+				+0.5
4,317,165	+				+0.8
4,317,165	+				+0.8
4,317,165	+				+0.1
4,317,165	+				+0.1
4,317,165	+				-0.4
4,317,165	+				+0.4
4,317,165	+				-0.5
4,317,165	+				-0.5
4,317,165	+				-0.9
4,317,173	+				+1.3
4,317,173	+				-0.1
4,317,173	-				-0.2
4,317,173	-				-2.2
4,317,173	-				-1.0
4,317,173	-				+0.3
4,317,173	-				+0.1
4,317,173	-				-1.1
4,317,181	+				-0.1
4,317,186	-				+0.8
4,317,189	-				-0.5
4,317,189	-				+0.3
4,317,246	+				-1.3
4,317,249	-				-0.0
4,317,249	-				-0.0
4,317,286	-				-1.1
4,317,291	+				+0.7
4,317,296	+		GFF4310	0.10	-1.5
4,317,304	+		GFF4310	0.10	+0.9
4,317,304	+		GFF4310	0.10	+0.4
4,317,304	+		GFF4310	0.10	+0.3
4,317,304	-		GFF4310	0.10	+0.3
4,317,311	+		GFF4310	0.11	+0.4
4,317,311	+		GFF4310	0.11	-0.4
4,317,312	-		GFF4310	0.11	-0.7
4,317,312	-		GFF4310	0.11	-0.7
4,317,314	-		GFF4310	0.11	-1.3
4,317,316	+		GFF4310	0.11	-0.8
4,317,334	-		GFF4310	0.11	+0.6
4,317,340	-		GFF4310	0.12	+0.8
4,317,360	-		GFF4310	0.12	-1.0
4,317,365	+		GFF4310	0.13	+0.6
4,317,373	-		GFF4310	0.13	-0.3
4,317,382	-		GFF4310	0.13	-0.7
4,317,382	-		GFF4310	0.13	+0.9
4,317,401	+		GFF4310	0.14	+0.5
4,317,401	+		GFF4310	0.14	-0.4
4,317,401	+		GFF4310	0.14	-1.8
4,317,408	+		GFF4310	0.14	+0.6
4,317,409	-		GFF4310	0.14	-1.5
4,317,420	-		GFF4310	0.15	-0.6
4,317,439	-		GFF4310	0.16	+0.1
4,317,453	+		GFF4310	0.16	-1.2
4,317,453	+		GFF4310	0.16	+1.1
4,317,453	+		GFF4310	0.16	+0.1
4,317,453	+		GFF4310	0.16	+0.8
4,317,461	-		GFF4310	0.16	-0.3
4,317,461	-		GFF4310	0.16	+0.2
4,317,461	-		GFF4310	0.16	+0.1
4,317,488	-		GFF4310	0.17	-0.4
4,317,488	-		GFF4310	0.17	-1.3
4,317,532	+		GFF4310	0.19	-0.5
4,317,549	-		GFF4310	0.20	-0.3
4,317,600	+		GFF4310	0.22	+0.5
4,317,606	-		GFF4310	0.22	-0.2
4,317,606	-		GFF4310	0.22	+0.0
4,317,618	+		GFF4310	0.23	+0.1
4,317,626	-		GFF4310	0.23	-0.3
4,317,626	-		GFF4310	0.23	+0.6
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