Strain Fitness in Sphingobium sp. HT1-2 around GFF4290

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,299,875	-		GFF4289	0.21	-0.6
4,299,875	-		GFF4289	0.21	-0.1
4,299,878	+		GFF4289	0.21	+1.0
4,299,879	+		GFF4289	0.22	-1.0
4,299,973	+		GFF4289	0.29	+1.0
4,299,981	-		GFF4289	0.30	-2.9
4,299,981	-		GFF4289	0.30	+0.9
4,299,991	+		GFF4289	0.30	+0.1
4,299,999	-		GFF4289	0.31	-2.1
4,300,004	-		GFF4289	0.31	-0.1
4,300,017	+		GFF4289	0.32	-0.0
4,300,017	+		GFF4289	0.32	+0.4
4,300,017	+		GFF4289	0.32	-2.4
4,300,017	+		GFF4289	0.32	-0.2
4,300,025	-		GFF4289	0.33	-2.3
4,300,056	-		GFF4289	0.36	+0.3
4,300,058	+		GFF4289	0.36	-0.7
4,300,071	+		GFF4289	0.37	-0.6
4,300,084	+		GFF4289	0.38	-1.7
4,300,089	-		GFF4289	0.38	-1.5
4,300,105	+		GFF4289	0.39	-0.9
4,300,105	+		GFF4289	0.39	-0.1
4,300,105	+		GFF4289	0.39	-2.1
4,300,105	+		GFF4289	0.39	+0.1
4,300,113	-		GFF4289	0.40	-0.3
4,300,113	-		GFF4289	0.40	+0.7
4,300,113	-		GFF4289	0.40	-0.4
4,300,113	-		GFF4289	0.40	-1.8
4,300,113	-		GFF4289	0.40	+0.2
4,300,113	-		GFF4289	0.40	-1.3
4,300,113	-		GFF4289	0.40	+0.5
4,300,115	+		GFF4289	0.40	+0.1
4,300,118	+		GFF4289	0.40	+0.9
4,300,131	+		GFF4289	0.42	+0.9
4,300,132	+		GFF4289	0.42	-1.7
4,300,139	-		GFF4289	0.42	+0.2
4,300,139	-		GFF4289	0.42	+0.7
4,300,139	-		GFF4289	0.42	+0.4
4,300,168	+		GFF4289	0.44	+0.9
4,300,168	+		GFF4289	0.44	-1.8
4,300,168	+		GFF4289	0.44	+0.1
4,300,172	-		GFF4289	0.45	+0.6
4,300,176	+		GFF4289	0.45	-2.4
4,300,176	-		GFF4289	0.45	-0.5
4,300,176	-		GFF4289	0.45	-1.5
4,300,176	-		GFF4289	0.45	-0.1
4,300,176	-		GFF4289	0.45	-1.9
4,300,176	-		GFF4289	0.45	-2.5
4,300,176	-		GFF4289	0.45	+0.8
4,300,176	-		GFF4289	0.45	-0.1
4,300,176	-		GFF4289	0.45	-0.1
4,300,176	-		GFF4289	0.45	-1.1
4,300,176	-		GFF4289	0.45	-0.6
4,300,184	-		GFF4289	0.46	-0.4
4,300,211	+		GFF4289	0.48	+1.1
4,300,212	+		GFF4289	0.48	+1.5
4,300,212	+		GFF4289	0.48	+0.4
4,300,219	-		GFF4289	0.48	-1.3
4,300,221	-		GFF4289	0.49	-1.5
4,300,222	-		GFF4289	0.49	+0.2
4,300,246	+		GFF4289	0.51	-0.2
4,300,254	-		GFF4289	0.51	+0.2
4,300,270	+		GFF4289	0.53	-0.3
4,300,279	+		GFF4289	0.53	-1.4
4,300,291	+		GFF4289	0.54	-0.9
4,300,301	-		GFF4289	0.55	-1.1
4,300,310	+		GFF4289	0.56	+0.3
4,300,310	+		GFF4289	0.56	-0.5
4,300,310	+		GFF4289	0.56	-0.4
4,300,310	+		GFF4289	0.56	-0.1
4,300,318	-		GFF4289	0.56	-0.8
4,300,318	-		GFF4289	0.56	+0.9
4,300,319	-		GFF4289	0.56	-2.1
4,300,336	+		GFF4289	0.58	-0.2
4,300,357	+		GFF4289	0.59	+1.2
4,300,357	+		GFF4289	0.59	-0.0
4,300,357	+		GFF4289	0.59	-0.7
4,300,357	+		GFF4289	0.59	+0.5
4,300,357	+		GFF4289	0.59	-1.4
4,300,357	+		GFF4289	0.59	-0.1
4,300,357	+		GFF4289	0.59	-0.6
4,300,365	-		GFF4289	0.60	+1.4
4,300,365	-		GFF4289	0.60	-1.2
4,300,365	-		GFF4289	0.60	+1.3
4,300,365	-		GFF4289	0.60	+1.1
4,300,365	-		GFF4289	0.60	-0.4
4,300,365	-		GFF4289	0.60	+0.6
4,300,365	-		GFF4289	0.60	-1.3
4,300,365	-		GFF4289	0.60	-0.2
4,300,370	-		GFF4289	0.60	+1.3
4,300,381	+		GFF4289	0.61	+0.6
4,300,381	+		GFF4289	0.61	+0.1
4,300,383	-		GFF4289	0.62	+0.5
4,300,385	+		GFF4289	0.62	+0.1
4,300,386	+		GFF4289	0.62	-1.0
4,300,386	+		GFF4289	0.62	+0.7
4,300,386	+		GFF4289	0.62	-0.1
4,300,391	+		GFF4289	0.62	-1.6
4,300,393	-		GFF4289	0.62	+0.5
4,300,396	+		GFF4289	0.63	-0.9
4,300,404	+		GFF4289	0.63	-0.1
4,300,404	+		GFF4289	0.63	-0.4
4,300,433	-		GFF4289	0.65	-0.8
4,300,436	+		GFF4289	0.66	-0.2
4,300,442	+		GFF4289	0.66	+0.4
4,300,447	+		GFF4289	0.67	-0.8
4,300,447	+		GFF4289	0.67	-0.8
4,300,447	+		GFF4289	0.67	-0.3
4,300,453	+		GFF4289	0.67	-0.1
4,300,453	+		GFF4289	0.67	+1.2
4,300,455	-		GFF4289	0.67	+0.7
4,300,455	-		GFF4289	0.67	-0.6
4,300,455	-		GFF4289	0.67	-0.0
4,300,455	-		GFF4289	0.67	-0.8
4,300,455	-		GFF4289	0.67	-0.0
4,300,455	-		GFF4289	0.67	+0.5
4,300,455	-		GFF4289	0.67	+1.0
4,300,461	-		GFF4289	0.68	-0.7
4,300,461	-		GFF4289	0.68	+0.1
4,300,473	+		GFF4289	0.69	-0.3
4,300,473	+		GFF4289	0.69	+2.1
4,300,474	-		GFF4289	0.69	-0.5
4,300,480	-		GFF4289	0.69	+0.9
4,300,482	+		GFF4289	0.69	-0.3
4,300,518	+		GFF4289	0.72	-1.5
4,300,520	-		GFF4289	0.72	-0.0
4,300,526	-		GFF4289	0.73	-0.8
4,300,531	-		GFF4289	0.73	-2.3
4,300,535	+		GFF4289	0.74	+0.1
4,300,564	+		GFF4289	0.76	+0.3
4,300,564	+		GFF4289	0.76	-1.4
4,300,567	-		GFF4289	0.76	-1.0
4,300,569	+		GFF4289	0.76	+0.3
4,300,577	-		GFF4289	0.77	-1.6
4,300,577	-		GFF4289	0.77	-1.5
4,300,587	+		GFF4289	0.78	-1.1
4,300,587	-		GFF4289	0.78	+0.4
4,300,595	-		GFF4289	0.78	-1.0
4,300,595	-		GFF4289	0.78	-0.3
4,300,595	-		GFF4289	0.78	-1.1
4,300,595	-		GFF4289	0.78	+0.3
4,300,600	-		GFF4289	0.79	+0.2
4,300,605	-		GFF4289	0.79	-0.8
4,300,610	-		GFF4289	0.80	-0.6
4,300,633	-		GFF4289	0.81	-0.7
4,300,654	-		GFF4289	0.83	-0.4
4,300,661	+		GFF4289	0.84	-0.3
4,300,661	+		GFF4289	0.84	+0.2
4,300,661	+		GFF4289	0.84	+0.1
4,300,661	+		GFF4289	0.84	+0.5
4,300,661	+		GFF4289	0.84	-0.1
4,300,661	+		GFF4289	0.84	-0.1
4,300,661	+		GFF4289	0.84	-1.2
4,300,661	+		GFF4289	0.84	+0.4
4,300,661	+		GFF4289	0.84	-0.5
4,300,661	+		GFF4289	0.84	-1.3
4,300,661	+		GFF4289	0.84	+0.1
4,300,661	+		GFF4289	0.84	+0.9
4,300,661	+		GFF4289	0.84	-0.3
4,300,661	+		GFF4289	0.84	+1.8
4,300,661	+		GFF4289	0.84	-0.9
4,300,661	+		GFF4289	0.84	-0.3
4,300,661	+		GFF4289	0.84	+0.0
4,300,661	+		GFF4289	0.84	-0.8
4,300,661	+		GFF4289	0.84	-1.1
4,300,661	+		GFF4289	0.84	-1.1
4,300,661	+		GFF4289	0.84	-1.9
4,300,661	+		GFF4289	0.84	-0.6
4,300,661	+		GFF4289	0.84	-1.5
4,300,663	+		GFF4289	0.84	+0.8
4,300,669	-		GFF4289	0.84	+0.2
4,300,669	-		GFF4289	0.84	-0.7
4,300,669	-		GFF4289	0.84	+0.7
4,300,669	-		GFF4289	0.84	+0.7
4,300,669	-		GFF4289	0.84	+0.2
4,300,669	-		GFF4289	0.84	+0.5
4,300,669	-		GFF4289	0.84	+1.0
4,300,669	-		GFF4289	0.84	+0.0
4,300,669	-		GFF4289	0.84	-0.0
4,300,669	-		GFF4289	0.84	+1.2
4,300,669	-		GFF4289	0.84	+0.2
4,300,669	-		GFF4289	0.84	+0.5
4,300,669	-		GFF4289	0.84	-0.4
4,300,669	-		GFF4289	0.84	-0.2
4,300,669	-		GFF4289	0.84	-0.7
4,300,669	-		GFF4289	0.84	+0.1
4,300,669	-		GFF4289	0.84	+0.1
4,300,669	-		GFF4289	0.84	-0.8
4,300,669	-		GFF4289	0.84	-0.0
4,300,669	-		GFF4289	0.84	-0.0
4,300,669	-		GFF4289	0.84	-0.2
4,300,669	-		GFF4289	0.84	+0.0
4,300,669	-		GFF4289	0.84	+0.1
4,300,669	-		GFF4289	0.84	-0.7
4,300,669	-		GFF4289	0.84	-0.8
4,300,671	-		GFF4289	0.84	-0.0
4,300,688	+		GFF4289	0.86	-1.8
4,300,716	+		GFF4289	0.88	-0.3
4,300,716	+		GFF4289	0.88	-1.6
4,300,716	+		GFF4289	0.88	+0.8
4,300,724	-		GFF4289	0.89	-1.6
4,300,731	+		GFF4289	0.89	-1.7
4,300,732	-		GFF4289	0.89	-1.0
4,300,736	+		GFF4289	0.90	+0.8
4,300,739	-		GFF4289	0.90	-0.0
4,300,740	-		GFF4289	0.90	+0.1
4,300,744	-				-0.2
4,300,763	+				-0.4
4,300,763	+				-0.0
4,300,770	+				-0.1
4,300,771	-				+0.1
4,300,783	-				-0.1
4,300,791	+				-0.6
4,300,791	+				-1.5
4,300,804	-				-1.7
4,300,822	+				+0.8
4,300,833	-				-0.0
4,300,857	+				+0.2
4,300,859	+				-1.1
4,300,865	-				+0.1
4,300,865	-				-0.0
4,300,865	-				+0.6
4,300,867	-				-1.2
4,300,871	-				+0.8
4,300,876	-				-0.0
4,300,881	-				-0.1
4,300,881	-				-0.4
4,300,881	-				-0.6
4,300,881	-				-0.4
4,300,886	+				+0.8
4,300,887	+				+0.2
4,300,895	-				+0.7
4,300,895	-				-0.0
4,300,900	-				-1.1
4,300,907	+				-2.5
4,300,925	-		GFF4290	0.11	-1.3
4,300,925	-		GFF4290	0.11	+0.5
4,300,925	-		GFF4290	0.11	-1.6
4,300,926	+		GFF4290	0.11	-0.4
4,300,946	+		GFF4290	0.16	-2.3
4,300,951	+		GFF4290	0.17	+0.5
4,300,951	+		GFF4290	0.17	-0.1
4,300,951	+		GFF4290	0.17	+0.2
4,300,951	+		GFF4290	0.17	-0.8
4,300,959	-		GFF4290	0.19	+0.2
4,300,973	+		GFF4290	0.22	+0.7
4,300,985	+		GFF4290	0.25	+0.0
4,300,987	-		GFF4290	0.25	-0.2
4,300,991	-		GFF4290	0.26	-1.3
4,300,996	+		GFF4290	0.27	-1.0
4,301,003	-		GFF4290	0.29	-0.6
4,301,004	-		GFF4290	0.29	+0.1
4,301,034	-		GFF4290	0.36	+0.1
4,301,050	+		GFF4290	0.39	-0.1
4,301,064	+		GFF4290	0.42	+1.2
4,301,065	+		GFF4290	0.43	-0.6
4,301,071	-		GFF4290	0.44	-0.6
4,301,071	-		GFF4290	0.44	+1.4
4,301,128	+		GFF4290	0.57	+0.4
4,301,133	+		GFF4290	0.58	-0.3
4,301,136	-		GFF4290	0.58	-0.2
4,301,190	-		GFF4290	0.70	-0.6
4,301,200	+		GFF4290	0.73	-0.1
4,301,200	+		GFF4290	0.73	-2.2
4,301,200	+		GFF4290	0.73	+0.6
4,301,200	+		GFF4290	0.73	+1.3
4,301,200	+		GFF4290	0.73	+0.2
4,301,208	-		GFF4290	0.74	+0.1
4,301,208	-		GFF4290	0.74	-0.6
4,301,215	+		GFF4290	0.76	-0.4
4,301,215	+		GFF4290	0.76	-0.4
4,301,215	+		GFF4290	0.76	-0.3
4,301,215	+		GFF4290	0.76	-1.4
4,301,215	+		GFF4290	0.76	-0.5
4,301,215	+		GFF4290	0.76	-1.6
4,301,223	-		GFF4290	0.78	-0.0
4,301,223	-		GFF4290	0.78	+1.0
4,301,223	-		GFF4290	0.78	-0.1
4,301,223	-		GFF4290	0.78	-0.4
4,301,223	-		GFF4290	0.78	-1.8
4,301,223	-		GFF4290	0.78	+0.8
4,301,223	-		GFF4290	0.78	-1.5
4,301,223	-		GFF4290	0.78	-0.3
4,301,223	-		GFF4290	0.78	-2.6
4,301,223	-		GFF4290	0.78	-0.3
4,301,223	-		GFF4290	0.78	-0.7
4,301,223	-		GFF4290	0.78	+0.5
4,301,234	+		GFF4290	0.80	+0.1
4,301,254	+		GFF4290	0.85	-0.3
4,301,254	+		GFF4290	0.85	+0.0
4,301,256	+		GFF4290	0.85	-0.2
4,301,256	+		GFF4290	0.85	-0.2
4,301,261	+		GFF4290	0.86	-0.9
4,301,261	+		GFF4290	0.86	-0.2
4,301,261	+		GFF4290	0.86	-0.9
4,301,261	+		GFF4290	0.86	+0.5
4,301,261	+		GFF4290	0.86	-2.8
4,301,266	+		GFF4290	0.87	-0.5
4,301,269	-		GFF4290	0.88	-0.4
4,301,269	-		GFF4290	0.88	-0.9
4,301,269	-		GFF4290	0.88	-0.7
4,301,270	+		GFF4290	0.88	-0.8
4,301,270	+		GFF4290	0.88	-0.1
4,301,270	+		GFF4290	0.88	+0.7
4,301,274	-		GFF4290	0.89	-2.3
4,301,274	-		GFF4290	0.89	-0.8
4,301,274	-		GFF4290	0.89	-1.9
4,301,276	-		GFF4290	0.90	-0.5
4,301,278	-				-1.2
4,301,285	+				-0.0
4,301,290	+				+1.4
4,301,290	+				+0.2
4,301,298	-				-2.3
4,301,298	-				+0.8
4,301,298	-				-0.2
4,301,298	-				-0.7
4,301,298	-				-1.3
4,301,298	-				+0.1
4,301,298	-				-0.6
4,301,298	-				+0.1
4,301,298	-				+0.2
4,301,298	-				+0.1
4,301,303	+				-0.2
4,301,311	-				+0.3
4,301,313	+				-0.7
4,301,355	-				+0.2
4,301,392	+				-0.7
4,301,392	+				+0.6
4,301,392	+				-0.1
4,301,392	+				+0.8
4,301,392	+				-2.1
4,301,392	+				-0.5
4,301,392	+				+0.9
4,301,392	+				-0.1
4,301,392	+				-0.3
4,301,392	+				-0.7
4,301,392	+				+1.8
4,301,392	+				+1.0
4,301,392	+				-2.0
4,301,392	+				+1.1
4,301,392	+				-0.5
4,301,392	+				-0.2
4,301,392	+				-0.8
4,301,392	+				-1.7
4,301,392	+				-1.1
4,301,400	-				-1.0
4,301,400	-				+1.5
4,301,400	-				-1.1
4,301,400	-				+0.1
4,301,400	-				+0.0
4,301,400	-				-0.2
4,301,400	-				+0.5
4,301,400	-				-0.9
4,301,400	-				+0.4
4,301,400	-				-0.7
4,301,400	-				-1.5
4,301,400	-				-0.2
4,301,400	-				-0.8
4,301,400	-				+0.6
4,301,400	-				+1.4
4,301,407	+				-1.4
4,301,420	-				+0.4
4,301,432	+				-1.5
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