Strain Fitness in Sphingobium sp. HT1-2 around GFF4274

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,287,545	-		GFF4271	0.46	+0.6
4,287,547	+		GFF4271	0.46	-1.7
4,287,548	+		GFF4271	0.47	+1.4
4,287,553	-		GFF4271	0.47	-0.7
4,287,555	-		GFF4271	0.47	+0.4
4,287,566	+		GFF4271	0.49	+0.2
4,287,568	+		GFF4271	0.49	-0.1
4,287,570	-		GFF4271	0.49	-0.1
4,287,576	+		GFF4271	0.50	+1.8
4,287,576	+		GFF4271	0.50	-0.7
4,287,584	-		GFF4271	0.51	-0.8
4,287,584	-		GFF4271	0.51	-0.2
4,287,614	-		GFF4271	0.55	-0.4
4,287,614	-		GFF4271	0.55	-0.5
4,287,624	+		GFF4271	0.56	-0.9
4,287,633	+		GFF4271	0.57	+0.7
4,287,633	-		GFF4271	0.57	+0.7
4,287,635	+		GFF4271	0.57	-0.2
4,287,640	+		GFF4271	0.58	-0.0
4,287,643	+		GFF4271	0.58	-0.5
4,287,643	-		GFF4271	0.58	-2.1
4,287,643	-		GFF4271	0.58	+0.3
4,287,645	-		GFF4271	0.59	+0.2
4,287,649	-		GFF4271	0.59	-0.0
4,287,649	-		GFF4271	0.59	-0.5
4,287,655	+		GFF4271	0.60	-0.1
4,287,660	+		GFF4271	0.60	-0.3
4,287,660	+		GFF4271	0.60	+0.4
4,287,709	+		GFF4271	0.67	-1.8
4,287,724	+		GFF4271	0.68	+0.4
4,287,732	-		GFF4271	0.69	-0.0
4,287,740	+		GFF4271	0.70	-1.0
4,287,752	+		GFF4271	0.72	-1.6
4,287,808	+		GFF4271	0.79	-0.0
4,287,808	+		GFF4271	0.79	+0.4
4,287,808	+		GFF4271	0.79	-0.3
4,287,816	-		GFF4271	0.80	+1.1
4,287,816	-		GFF4271	0.80	-2.5
4,287,826	+		GFF4271	0.81	-0.6
4,287,826	+		GFF4271	0.81	-1.3
4,287,826	+		GFF4271	0.81	-2.2
4,287,834	-		GFF4271	0.82	-0.1
4,287,834	-		GFF4271	0.82	-0.2
4,287,834	-		GFF4271	0.82	-0.1
4,287,860	-		GFF4271	0.85	-0.6
4,287,862	-		GFF4271	0.86	+1.6
4,287,874	+		GFF4271	0.87	+0.4
4,287,892	-		GFF4271	0.89	-1.3
4,287,907	+				+0.1
4,287,908	-				-0.3
4,287,915	-				-1.3
4,287,915	-				+1.1
4,287,919	+				-0.5
4,287,919	+				+0.1
4,287,923	+				-1.1
4,287,924	+				+0.6
4,287,934	+				-0.2
4,287,942	-				-0.8
4,287,944	+				+0.0
4,287,959	+				+0.5
4,287,959	+				-0.7
4,288,018	+		GFF4272	0.21	-0.3
4,288,026	-		GFF4272	0.25	-1.7
4,288,050	-		GFF4272	0.36	-0.9
4,288,051	-		GFF4272	0.37	-0.6
4,288,057	-		GFF4272	0.40	-0.8
4,288,058	-		GFF4272	0.40	+0.6
4,288,067	+		GFF4272	0.44	-1.9
4,288,075	-		GFF4272	0.48	+0.6
4,288,086	+		GFF4272	0.53	-0.5
4,288,092	-		GFF4272	0.56	-0.4
4,288,094	-		GFF4272	0.57	-0.4
4,288,095	-		GFF4272	0.58	-0.4
4,288,100	-		GFF4272	0.60	+0.4
4,288,100	-		GFF4272	0.60	-1.5
4,288,106	+		GFF4272	0.63	+0.6
4,288,113	+		GFF4272	0.66	-1.0
4,288,118	+		GFF4272	0.69	+0.8
4,288,121	-		GFF4272	0.70	-0.6
4,288,126	-		GFF4272	0.72	-0.4
4,288,126	-		GFF4272	0.72	-0.1
4,288,130	+		GFF4272	0.74	-1.3
4,288,139	-		GFF4272	0.79	-0.2
4,288,194	+				-0.3
4,288,194	+				+1.0
4,288,199	+				+0.4
4,288,202	-				-0.2
4,288,205	-				-0.6
4,288,206	+				-0.5
4,288,238	+				+0.1
4,288,248	-		GFF4273	0.11	+1.3
4,288,248	-		GFF4273	0.11	-0.3
4,288,267	+		GFF4273	0.17	+1.2
4,288,267	-		GFF4273	0.17	-0.7
4,288,317	+		GFF4273	0.32	+0.3
4,288,321	+		GFF4273	0.33	-1.8
4,288,321	+		GFF4273	0.33	+1.6
4,288,321	+		GFF4273	0.33	+0.6
4,288,321	+		GFF4273	0.33	-0.8
4,288,325	+		GFF4273	0.34	+0.4
4,288,329	-		GFF4273	0.35	-0.4
4,288,329	-		GFF4273	0.35	-2.0
4,288,329	-		GFF4273	0.35	+0.9
4,288,329	-		GFF4273	0.35	-1.9
4,288,329	-		GFF4273	0.35	-2.1
4,288,337	-		GFF4273	0.38	-2.1
4,288,356	-		GFF4273	0.44	+1.2
4,288,358	-		GFF4273	0.44	-0.8
4,288,398	+		GFF4273	0.56	+1.5
4,288,406	-		GFF4273	0.59	-0.4
4,288,406	-		GFF4273	0.59	-0.3
4,288,409	+		GFF4273	0.60	+0.8
4,288,411	-		GFF4273	0.60	+0.8
4,288,415	+		GFF4273	0.62	-1.8
4,288,417	-		GFF4273	0.62	-1.1
4,288,418	-		GFF4273	0.62	+1.0
4,288,423	-		GFF4273	0.64	-1.0
4,288,437	-		GFF4273	0.68	+1.1
4,288,443	+		GFF4273	0.70	-0.8
4,288,451	-		GFF4273	0.72	-0.6
4,288,474	+		GFF4273	0.79	-1.7
4,288,482	-		GFF4273	0.82	+0.7
4,288,482	-		GFF4273	0.82	+0.3
4,288,484	-		GFF4273	0.82	+0.1
4,288,486	-		GFF4273	0.83	-0.3
4,288,493	+		GFF4273	0.85	-2.1
4,288,503	+		GFF4273	0.88	+0.1
4,288,503	+		GFF4273	0.88	+0.4
4,288,503	+		GFF4273	0.88	+0.6
4,288,503	+		GFF4273	0.88	+0.4
4,288,503	+		GFF4273	0.88	+0.4
4,288,503	+		GFF4273	0.88	-1.3
4,288,503	+		GFF4273	0.88	-1.9
4,288,503	+		GFF4273	0.88	+0.1
4,288,503	+		GFF4273	0.88	-0.9
4,288,503	+		GFF4273	0.88	-2.0
4,288,503	+		GFF4273	0.88	-0.2
4,288,503	+		GFF4273	0.88	-2.3
4,288,503	+		GFF4273	0.88	-1.8
4,288,503	+		GFF4273	0.88	+0.1
4,288,503	+		GFF4273	0.88	-0.3
4,288,503	+		GFF4273	0.88	-0.8
4,288,504	-		GFF4273	0.88	-0.4
4,288,511	-				-1.4
4,288,511	-				+0.2
4,288,511	-				-1.3
4,288,511	-				-0.4
4,288,511	-				+1.4
4,288,511	-				+0.8
4,288,511	-				-0.6
4,288,511	-				+0.8
4,288,511	-				-0.6
4,288,517	-				-0.5
4,288,523	+				+0.7
4,288,523	+				-0.2
4,288,523	+				-1.1
4,288,523	+				-0.6
4,288,529	+				-1.9
4,288,531	-				+1.3
4,288,531	-				+0.1
4,288,537	-				-0.0
4,288,537	-				-0.6
4,288,580	+				-2.3
4,288,581	+				-0.7
4,288,596	-				+0.3
4,288,610	+		GFF4274	0.12	+0.5
4,288,618	-		GFF4274	0.13	-0.2
4,288,618	-		GFF4274	0.13	+0.7
4,288,618	-		GFF4274	0.13	-2.5
4,288,618	-		GFF4274	0.13	+0.7
4,288,620	+		GFF4274	0.13	+0.5
4,288,620	+		GFF4274	0.13	-2.1
4,288,620	+		GFF4274	0.13	-0.5
4,288,620	+		GFF4274	0.13	+0.6
4,288,620	+		GFF4274	0.13	-0.2
4,288,621	+		GFF4274	0.13	-0.0
4,288,628	-		GFF4274	0.14	-0.3
4,288,628	-		GFF4274	0.14	-1.0
4,288,628	-		GFF4274	0.14	-1.9
4,288,640	+		GFF4274	0.16	-0.7
4,288,656	-		GFF4274	0.19	+0.6
4,288,703	+		GFF4274	0.26	+0.1
4,288,703	-		GFF4274	0.26	-0.4
4,288,703	-		GFF4274	0.26	+0.1
4,288,741	+		GFF4274	0.32	-1.1
4,288,744	+		GFF4274	0.32	-1.8
4,288,746	+		GFF4274	0.32	-0.2
4,288,751	+		GFF4274	0.33	+0.7
4,288,777	-		GFF4274	0.37	+0.3
4,288,796	-		GFF4274	0.40	+0.5
4,288,804	-		GFF4274	0.41	-0.2
4,288,804	-		GFF4274	0.41	+0.0
4,288,804	-		GFF4274	0.41	-1.4
4,288,806	+		GFF4274	0.42	+0.1
4,288,806	+		GFF4274	0.42	-0.1
4,288,814	-		GFF4274	0.43	+0.4
4,288,814	-		GFF4274	0.43	+0.4
4,288,825	+		GFF4274	0.44	+1.0
4,288,825	+		GFF4274	0.44	-0.2
4,288,825	+		GFF4274	0.44	+0.2
4,288,831	+		GFF4274	0.45	-0.4
4,288,833	-		GFF4274	0.46	-0.1
4,288,843	-		GFF4274	0.47	-0.2
4,288,843	-		GFF4274	0.47	-1.0
4,288,915	-		GFF4274	0.58	+0.7
4,288,923	+		GFF4274	0.59	-2.3
4,288,930	+		GFF4274	0.61	+0.2
4,288,931	+		GFF4274	0.61	-0.1
4,288,941	+		GFF4274	0.62	-2.3
4,288,954	-		GFF4274	0.64	-0.9
4,288,954	-		GFF4274	0.64	-0.9
4,288,954	-		GFF4274	0.64	-0.4
4,288,954	-		GFF4274	0.64	-0.8
4,288,956	+		GFF4274	0.65	+0.2
4,288,956	+		GFF4274	0.65	+0.6
4,288,956	+		GFF4274	0.65	+0.1
4,288,964	-		GFF4274	0.66	+0.1
4,288,964	-		GFF4274	0.66	-0.5
4,288,964	-		GFF4274	0.66	+0.5
4,288,964	-		GFF4274	0.66	-0.0
4,288,964	-		GFF4274	0.66	+0.3
4,288,964	-		GFF4274	0.66	-0.3
4,288,964	-		GFF4274	0.66	-0.5
4,288,964	-		GFF4274	0.66	-1.2
4,288,964	-		GFF4274	0.66	-0.1
4,289,003	-		GFF4274	0.72	+0.6
4,289,003	-		GFF4274	0.72	+0.0
4,289,005	+		GFF4274	0.72	-1.0
4,289,005	+		GFF4274	0.72	+0.1
4,289,005	+		GFF4274	0.72	-1.7
4,289,005	+		GFF4274	0.72	-2.0
4,289,005	+		GFF4274	0.72	-0.3
4,289,005	+		GFF4274	0.72	-2.7
4,289,013	-		GFF4274	0.73	-0.5
4,289,013	-		GFF4274	0.73	+0.0
4,289,013	-		GFF4274	0.73	+0.1
4,289,015	-		GFF4274	0.74	-2.2
4,289,031	+		GFF4274	0.76	-0.6
4,289,048	+		GFF4274	0.79	-0.2
4,289,049	-		GFF4274	0.79	+0.6
4,289,053	+		GFF4274	0.79	-0.2
4,289,055	-		GFF4274	0.80	+0.8
4,289,061	-		GFF4274	0.81	+0.9
4,289,067	+		GFF4274	0.81	-0.1
4,289,068	+		GFF4274	0.82	-0.3
4,289,070	-		GFF4274	0.82	-1.1
4,289,070	-		GFF4274	0.82	+0.4
4,289,081	-		GFF4274	0.84	-0.5
4,289,081	-		GFF4274	0.84	+0.7
4,289,095	+		GFF4274	0.86	+0.2
4,289,108	+		GFF4274	0.88	+1.1
4,289,136	+				+0.1
4,289,139	+				+1.0
4,289,144	+				+0.2
4,289,144	+				-1.0
4,289,147	-				-1.5
4,289,152	-				-1.0
4,289,162	-				-0.0
4,289,167	-				-1.2
4,289,170	+				+0.9
4,289,190	-				+0.4
4,289,192	+				+0.4
4,289,199	-				-0.7
4,289,207	+				+0.6
4,289,221	+				+0.3
4,289,221	+				+0.8
4,289,221	+				+0.4
4,289,221	+				-0.9
4,289,221	+				-1.5
4,289,221	+				-1.0
4,289,221	+				-0.3
4,289,229	-				+1.6
4,289,229	-				-0.9
4,289,229	-				-0.0
4,289,229	-				-1.9
4,289,229	-				+0.1
4,289,245	+				-2.3
4,289,245	+				-0.3
4,289,245	+				-1.7
4,289,251	-				-1.2
4,289,253	-				-0.2
4,289,253	-				+1.0
4,289,255	+				-0.3
4,289,261	+				+0.8
4,289,262	-				+0.3
4,289,268	-				+0.6
4,289,268	-				-0.3
4,289,278	+				-1.0
4,289,290	+				+0.5
4,289,323	+				+0.1
4,289,330	-				-1.0
4,289,362	-				-0.1
4,289,389	-				-1.4
4,289,389	-				+0.4
4,289,401	+				-0.5
4,289,401	+				-0.4
4,289,401	+				+0.1
4,289,401	+				+1.4
4,289,408	+				-0.7
4,289,408	+				-2.5
4,289,408	+				+0.2
4,289,409	-				-1.6
4,289,409	-				-0.4
4,289,411	-				-0.5
4,289,411	-				-1.1
4,289,413	+				+0.6
4,289,413	+				-1.4
4,289,413	+				+1.1
4,289,413	+				-1.5
4,289,413	+				-1.0
4,289,416	-				-2.8
4,289,416	-				+0.5
4,289,421	-				+0.2
4,289,421	-				+0.4
4,289,421	-				-0.4
4,289,423	+				-0.2
4,289,423	+				-1.1
4,289,423	+				-1.6
4,289,423	+				-0.8
4,289,423	+				+0.6
4,289,423	+				-0.5
4,289,423	+				+1.0
4,289,423	+				+0.7
4,289,423	+				-2.8
4,289,423	+				-0.8
4,289,431	-				+1.2
4,289,431	-				+0.3
4,289,431	-				+0.2
4,289,431	-				+1.0
4,289,431	-				-0.4
4,289,431	-				-1.1
4,289,431	-				-1.0
4,289,431	-				-0.4
4,289,434	+				-0.3
4,289,440	+		GFF4275	0.10	+1.4
4,289,441	-		GFF4275	0.10	-2.3
4,289,464	+		GFF4275	0.12	+0.4
4,289,464	+		GFF4275	0.12	-1.2
4,289,520	-		GFF4275	0.15	-0.3
4,289,522	-		GFF4275	0.15	+0.1
4,289,526	+		GFF4275	0.15	-0.6
4,289,534	-		GFF4275	0.16	-0.4
4,289,534	-		GFF4275	0.16	-0.7
4,289,534	-		GFF4275	0.16	-3.0
4,289,544	+		GFF4275	0.16	-0.1
4,289,548	+		GFF4275	0.17	+1.0
4,289,566	-		GFF4275	0.18	-0.9
4,289,567	-		GFF4275	0.18	-1.7
4,289,570	+		GFF4275	0.18	-1.5
4,289,587	+		GFF4275	0.19	-1.2
4,289,590	+		GFF4275	0.19	+1.3
4,289,610	+		GFF4275	0.20	+0.4
4,289,610	+		GFF4275	0.20	+0.2
4,289,614	-		GFF4275	0.20	+0.5
4,289,636	+		GFF4275	0.22	+0.8
4,289,668	+		GFF4275	0.23	-0.5
4,289,668	+		GFF4275	0.23	+0.5
4,289,690	+		GFF4275	0.25	-0.1
4,289,690	+		GFF4275	0.25	-0.5
4,289,690	+		GFF4275	0.25	-1.1
4,289,690	+		GFF4275	0.25	+0.8
4,289,697	+		GFF4275	0.25	-0.3
4,289,698	-		GFF4275	0.25	+0.5
4,289,729	+		GFF4275	0.27	+0.2
4,289,737	+		GFF4275	0.27	-0.3
4,289,742	+		GFF4275	0.28	-0.5
4,289,742	+		GFF4275	0.28	-0.9
4,289,750	-		GFF4275	0.28	-0.8
4,289,755	-		GFF4275	0.29	+0.8
4,289,783	-		GFF4275	0.30	-2.6
4,289,784	-		GFF4275	0.30	+0.0
4,289,785	+		GFF4275	0.30	-0.5
4,289,841	+		GFF4275	0.34	+0.4
4,289,860	-		GFF4275	0.35	-0.6
4,289,862	+		GFF4275	0.35	+0.6
4,289,862	+		GFF4275	0.35	-0.6
4,289,862	+		GFF4275	0.35	-0.1
4,289,862	+		GFF4275	0.35	-2.0
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