Strain Fitness in Sphingobium sp. HT1-2 around GFF4271

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,286,176	+				-0.5
4,286,184	-				+0.3
4,286,184	-				-0.3
4,286,191	+				-0.6
4,286,191	-				+0.6
4,286,201	-				-0.1
4,286,250	+				-0.1
4,286,263	-				+0.5
4,286,272	-				-0.8
4,286,274	+				-1.2
4,286,274	+				-1.1
4,286,274	+				+0.0
4,286,274	+				-0.8
4,286,274	+				-0.1
4,286,274	+				+0.1
4,286,280	-				-1.7
4,286,282	-				-2.3
4,286,282	-				-1.5
4,286,282	-				+0.6
4,286,282	-				-0.4
4,286,282	-				-0.1
4,286,282	-				+0.1
4,286,282	-				-1.4
4,286,287	-				+0.4
4,286,319	+				+1.7
4,286,326	-				-0.2
4,286,328	-				-0.1
4,286,328	-				-0.7
4,286,349	+				+0.4
4,286,368	+				+0.4
4,286,390	+				-0.2
4,286,390	+				-0.9
4,286,398	-				-0.4
4,286,409	-				-0.3
4,286,409	-				+0.4
4,286,419	+				-0.7
4,286,424	+				+0.7
4,286,424	+				-0.4
4,286,424	+				-0.3
4,286,425	-				+1.2
4,286,432	-				-0.5
4,286,448	-				+0.4
4,286,465	+				+0.7
4,286,468	-				-1.0
4,286,473	-				+0.5
4,286,478	-				-1.5
4,286,494	+				-1.6
4,286,494	+				-1.3
4,286,508	+				+0.8
4,286,525	+		GFF4269	0.10	+1.4
4,286,525	+		GFF4269	0.10	+1.1
4,286,536	+		GFF4269	0.13	+0.9
4,286,538	-		GFF4269	0.13	+0.2
4,286,557	-		GFF4269	0.17	+0.9
4,286,559	-		GFF4269	0.18	+0.4
4,286,579	+		GFF4269	0.22	-0.0
4,286,579	+		GFF4269	0.22	-0.6
4,286,579	+		GFF4269	0.22	-0.6
4,286,579	+		GFF4269	0.22	+1.3
4,286,579	+		GFF4269	0.22	-0.0
4,286,579	+		GFF4269	0.22	+0.6
4,286,587	-		GFF4269	0.24	+0.3
4,286,587	-		GFF4269	0.24	-0.9
4,286,587	-		GFF4269	0.24	-0.3
4,286,600	-		GFF4269	0.26	-0.9
4,286,606	-		GFF4269	0.28	+1.2
4,286,617	+		GFF4269	0.30	-2.3
4,286,641	+		GFF4269	0.35	-0.4
4,286,649	-		GFF4269	0.37	-0.7
4,286,657	+		GFF4269	0.39	+0.1
4,286,659	-		GFF4269	0.39	-0.8
4,286,715	-		GFF4269	0.51	+0.3
4,286,725	+		GFF4269	0.53	-0.3
4,286,733	-		GFF4269	0.55	+0.7
4,286,735	+		GFF4269	0.56	-0.5
4,286,735	+		GFF4269	0.56	+1.0
4,286,743	-		GFF4269	0.57	-1.2
4,286,743	-		GFF4269	0.57	-1.0
4,286,746	+		GFF4269	0.58	-0.5
4,286,746	+		GFF4269	0.58	-1.4
4,286,746	+		GFF4269	0.58	+0.6
4,286,746	+		GFF4269	0.58	+0.2
4,286,746	+		GFF4269	0.58	-1.4
4,286,746	+		GFF4269	0.58	-0.3
4,286,754	-		GFF4269	0.60	-0.2
4,286,754	-		GFF4269	0.60	-0.1
4,286,754	-		GFF4269	0.60	-1.1
4,286,756	+		GFF4269	0.60	+0.1
4,286,756	+		GFF4269	0.60	+0.9
4,286,764	-		GFF4269	0.62	-0.7
4,286,788	+		GFF4269	0.67	+0.5
4,286,788	+		GFF4269	0.67	-0.1
4,286,792	-		GFF4269	0.68	-0.4
4,286,793	+		GFF4269	0.68	-1.4
4,286,798	+		GFF4269	0.69	-1.6
4,286,804	+		GFF4269	0.71	-0.3
4,286,810	+		GFF4269	0.72	-1.0
4,286,811	-		GFF4269	0.72	+0.2
4,286,818	-		GFF4269	0.74	-2.1
4,286,828	-		GFF4269	0.76	+1.1
4,286,835	+		GFF4269	0.77	-0.9
4,286,836	+		GFF4269	0.77	+1.0
4,286,883	+		GFF4269	0.88	-0.5
4,286,888	+		GFF4269	0.89	+0.8
4,286,933	+				+1.7
4,286,935	-				-0.5
4,286,948	+				+0.7
4,286,948	+				-0.0
4,286,948	+				-1.9
4,286,948	+				-0.1
4,286,948	+				+1.3
4,286,955	+				-1.5
4,286,955	+				-0.7
4,286,955	+				+1.6
4,286,955	+				-1.3
4,286,956	-				-1.0
4,286,963	-		GFF4270	0.11	-0.3
4,286,963	-		GFF4270	0.11	-1.0
4,286,963	-		GFF4270	0.11	+0.1
4,286,963	-		GFF4270	0.11	+1.5
4,286,963	-		GFF4270	0.11	-2.1
4,286,973	-		GFF4270	0.15	+0.4
4,286,973	-		GFF4270	0.15	-0.0
4,286,974	-		GFF4270	0.15	-0.7
4,286,975	+		GFF4270	0.16	-1.5
4,286,998	-		GFF4270	0.25	-1.4
4,287,000	-		GFF4270	0.26	+0.6
4,287,010	+		GFF4270	0.30	-0.1
4,287,010	+		GFF4270	0.30	-0.1
4,287,010	+		GFF4270	0.30	-0.4
4,287,012	+		GFF4270	0.31	-0.8
4,287,012	+		GFF4270	0.31	+0.4
4,287,012	+		GFF4270	0.31	+1.3
4,287,012	+		GFF4270	0.31	-0.3
4,287,018	-		GFF4270	0.33	-0.0
4,287,019	-		GFF4270	0.33	-1.1
4,287,020	-		GFF4270	0.34	-0.1
4,287,020	-		GFF4270	0.34	+1.3
4,287,020	-		GFF4270	0.34	-1.8
4,287,020	-		GFF4270	0.34	-0.4
4,287,025	-		GFF4270	0.36	-0.1
4,287,032	-		GFF4270	0.39	+1.0
4,287,042	-		GFF4270	0.43	+0.3
4,287,042	-		GFF4270	0.43	-1.9
4,287,048	-		GFF4270	0.45	+1.2
4,287,048	-		GFF4270	0.45	-1.7
4,287,048	-		GFF4270	0.45	-0.7
4,287,050	+		GFF4270	0.46	-0.9
4,287,050	+		GFF4270	0.46	+0.2
4,287,054	-		GFF4270	0.47	-0.7
4,287,058	-		GFF4270	0.49	-2.3
4,287,066	+		GFF4270	0.52	-1.8
4,287,072	+		GFF4270	0.55	-0.1
4,287,074	-		GFF4270	0.55	-0.3
4,287,074	-		GFF4270	0.55	-0.8
4,287,100	+		GFF4270	0.66	-0.8
4,287,100	+		GFF4270	0.66	-1.8
4,287,100	+		GFF4270	0.66	-0.5
4,287,104	-		GFF4270	0.67	-2.0
4,287,108	-		GFF4270	0.69	-1.9
4,287,108	-		GFF4270	0.69	-3.8
4,287,111	+		GFF4270	0.70	-0.3
4,287,112	+		GFF4270	0.71	-0.1
4,287,149	+		GFF4270	0.86	+1.5
4,287,149	+		GFF4270	0.86	+0.9
4,287,149	+		GFF4270	0.86	-0.7
4,287,149	+		GFF4270	0.86	-0.7
4,287,149	+		GFF4270	0.86	-0.6
4,287,149	+		GFF4270	0.86	-2.1
4,287,157	-		GFF4270	0.89	+0.9
4,287,157	-		GFF4270	0.89	-0.4
4,287,157	-		GFF4270	0.89	+0.2
4,287,163	-				+0.6
4,287,164	+				-1.7
4,287,172	-				-0.4
4,287,205	-				+0.7
4,287,209	+				+0.4
4,287,228	+				-0.7
4,287,228	+				-0.6
4,287,230	+				-0.0
4,287,230	+				-0.5
4,287,238	-				-0.5
4,287,238	-				-0.3
4,287,241	+				-1.7
4,287,246	+				-0.9
4,287,246	+				-0.2
4,287,246	+				-0.3
4,287,246	+				+0.3
4,287,253	-				+0.9
4,287,254	-				-1.2
4,287,254	-				-0.9
4,287,254	-				-2.2
4,287,254	-				+0.1
4,287,254	-				+0.8
4,287,254	-				+0.1
4,287,269	+		GFF4271	0.12	-0.3
4,287,269	+		GFF4271	0.12	-0.9
4,287,277	-		GFF4271	0.13	-0.6
4,287,277	-		GFF4271	0.13	-0.2
4,287,277	-		GFF4271	0.13	+1.1
4,287,277	-		GFF4271	0.13	-0.9
4,287,277	-		GFF4271	0.13	+0.0
4,287,279	+		GFF4271	0.13	-0.5
4,287,279	+		GFF4271	0.13	+0.0
4,287,279	+		GFF4271	0.13	-0.5
4,287,279	+		GFF4271	0.13	-0.8
4,287,287	-		GFF4271	0.14	-2.6
4,287,287	-		GFF4271	0.14	-1.1
4,287,287	-		GFF4271	0.14	+0.2
4,287,287	-		GFF4271	0.14	-1.4
4,287,287	-		GFF4271	0.14	+1.1
4,287,287	-		GFF4271	0.14	+0.3
4,287,304	+		GFF4271	0.16	-2.2
4,287,309	+		GFF4271	0.17	+0.3
4,287,317	-		GFF4271	0.18	+0.1
4,287,350	+		GFF4271	0.22	-0.0
4,287,353	-		GFF4271	0.22	-0.1
4,287,355	+		GFF4271	0.23	-0.4
4,287,358	-		GFF4271	0.23	-1.6
4,287,360	+		GFF4271	0.23	+0.3
4,287,360	+		GFF4271	0.23	-0.9
4,287,360	+		GFF4271	0.23	+1.0
4,287,360	+		GFF4271	0.23	-2.3
4,287,360	+		GFF4271	0.23	+1.2
4,287,363	-		GFF4271	0.24	+1.1
4,287,368	-		GFF4271	0.24	-1.4
4,287,368	-		GFF4271	0.24	-0.5
4,287,368	-		GFF4271	0.24	-0.3
4,287,368	-		GFF4271	0.24	+0.8
4,287,368	-		GFF4271	0.24	-0.0
4,287,368	-		GFF4271	0.24	+0.5
4,287,378	-		GFF4271	0.25	-0.5
4,287,414	+		GFF4271	0.30	-0.9
4,287,415	+		GFF4271	0.30	-0.4
4,287,426	-		GFF4271	0.31	-0.6
4,287,443	+		GFF4271	0.33	-0.7
4,287,452	+		GFF4271	0.35	-0.4
4,287,452	+		GFF4271	0.35	+0.4
4,287,460	-		GFF4271	0.36	-1.3
4,287,469	+		GFF4271	0.37	-1.0
4,287,469	+		GFF4271	0.37	-0.2
4,287,469	+		GFF4271	0.37	+0.7
4,287,474	+		GFF4271	0.37	-1.4
4,287,474	+		GFF4271	0.37	-0.3
4,287,474	+		GFF4271	0.37	-0.2
4,287,474	+		GFF4271	0.37	-2.0
4,287,474	+		GFF4271	0.37	-0.5
4,287,474	+		GFF4271	0.37	-0.7
4,287,474	+		GFF4271	0.37	-0.7
4,287,474	+		GFF4271	0.37	+0.5
4,287,474	+		GFF4271	0.37	-0.6
4,287,474	+		GFF4271	0.37	-1.4
4,287,474	+		GFF4271	0.37	+0.9
4,287,474	+		GFF4271	0.37	+0.1
4,287,474	+		GFF4271	0.37	-1.1
4,287,474	+		GFF4271	0.37	-0.5
4,287,474	+		GFF4271	0.37	-1.2
4,287,477	-		GFF4271	0.38	-0.3
4,287,477	-		GFF4271	0.38	+0.8
4,287,481	+		GFF4271	0.38	+0.0
4,287,482	-		GFF4271	0.38	+0.5
4,287,482	-		GFF4271	0.38	-0.8
4,287,482	-		GFF4271	0.38	-0.4
4,287,482	-		GFF4271	0.38	-0.7
4,287,482	-		GFF4271	0.38	-0.6
4,287,482	-		GFF4271	0.38	-0.6
4,287,482	-		GFF4271	0.38	-1.4
4,287,482	-		GFF4271	0.38	-0.7
4,287,482	-		GFF4271	0.38	-2.9
4,287,482	-		GFF4271	0.38	+0.2
4,287,482	-		GFF4271	0.38	+0.2
4,287,482	-		GFF4271	0.38	+0.1
4,287,482	-		GFF4271	0.38	-0.7
4,287,482	-		GFF4271	0.38	-0.1
4,287,482	-		GFF4271	0.38	-0.5
4,287,482	-		GFF4271	0.38	-0.6
4,287,482	-		GFF4271	0.38	-1.1
4,287,482	-		GFF4271	0.38	-0.3
4,287,482	-		GFF4271	0.38	-1.6
4,287,482	-		GFF4271	0.38	-2.3
4,287,482	-		GFF4271	0.38	+0.9
4,287,482	-		GFF4271	0.38	+1.2
4,287,482	-		GFF4271	0.38	+0.1
4,287,482	-		GFF4271	0.38	-2.5
4,287,482	-		GFF4271	0.38	-2.2
4,287,482	-		GFF4271	0.38	-0.1
4,287,487	-		GFF4271	0.39	+0.1
4,287,496	+		GFF4271	0.40	-0.2
4,287,498	+		GFF4271	0.40	-1.9
4,287,498	+		GFF4271	0.40	-1.3
4,287,498	+		GFF4271	0.40	-1.6
4,287,498	+		GFF4271	0.40	+0.1
4,287,498	+		GFF4271	0.40	+1.7
4,287,498	+		GFF4271	0.40	-0.1
4,287,498	+		GFF4271	0.40	-1.5
4,287,500	-		GFF4271	0.41	+0.4
4,287,503	+		GFF4271	0.41	-1.0
4,287,506	-		GFF4271	0.41	-0.2
4,287,506	-		GFF4271	0.41	-1.6
4,287,506	-		GFF4271	0.41	+1.1
4,287,506	-		GFF4271	0.41	-0.3
4,287,506	-		GFF4271	0.41	-1.5
4,287,511	+		GFF4271	0.42	-2.3
4,287,511	+		GFF4271	0.42	-0.3
4,287,519	-		GFF4271	0.43	+0.3
4,287,523	-		GFF4271	0.43	-1.5
4,287,545	-		GFF4271	0.46	+0.6
4,287,547	+		GFF4271	0.46	-1.7
4,287,548	+		GFF4271	0.47	+1.4
4,287,553	-		GFF4271	0.47	-0.7
4,287,555	-		GFF4271	0.47	+0.4
4,287,566	+		GFF4271	0.49	+0.2
4,287,568	+		GFF4271	0.49	-0.1
4,287,570	-		GFF4271	0.49	-0.1
4,287,576	+		GFF4271	0.50	+1.8
4,287,576	+		GFF4271	0.50	-0.7
4,287,584	-		GFF4271	0.51	-0.8
4,287,584	-		GFF4271	0.51	-0.2
4,287,614	-		GFF4271	0.55	-0.4
4,287,614	-		GFF4271	0.55	-0.5
4,287,624	+		GFF4271	0.56	-0.9
4,287,633	+		GFF4271	0.57	+0.7
4,287,633	-		GFF4271	0.57	+0.7
4,287,635	+		GFF4271	0.57	-0.2
4,287,640	+		GFF4271	0.58	-0.0
4,287,643	+		GFF4271	0.58	-0.5
4,287,643	-		GFF4271	0.58	-2.1
4,287,643	-		GFF4271	0.58	+0.3
4,287,645	-		GFF4271	0.59	+0.2
4,287,649	-		GFF4271	0.59	-0.0
4,287,649	-		GFF4271	0.59	-0.5
4,287,655	+		GFF4271	0.60	-0.1
4,287,660	+		GFF4271	0.60	-0.3
4,287,660	+		GFF4271	0.60	+0.4
4,287,709	+		GFF4271	0.67	-1.8
4,287,724	+		GFF4271	0.68	+0.4
4,287,732	-		GFF4271	0.69	-0.0
4,287,740	+		GFF4271	0.70	-1.0
4,287,752	+		GFF4271	0.72	-1.6
4,287,808	+		GFF4271	0.79	-0.0
4,287,808	+		GFF4271	0.79	+0.4
4,287,808	+		GFF4271	0.79	-0.3
4,287,816	-		GFF4271	0.80	+1.1
4,287,816	-		GFF4271	0.80	-2.5
4,287,826	+		GFF4271	0.81	-0.6
4,287,826	+		GFF4271	0.81	-1.3
4,287,826	+		GFF4271	0.81	-2.2
4,287,834	-		GFF4271	0.82	-0.1
4,287,834	-		GFF4271	0.82	-0.2
4,287,834	-		GFF4271	0.82	-0.1
4,287,860	-		GFF4271	0.85	-0.6
4,287,862	-		GFF4271	0.86	+1.6
4,287,874	+		GFF4271	0.87	+0.4
4,287,892	-		GFF4271	0.89	-1.3
4,287,907	+				+0.1
4,287,908	-				-0.3
4,287,915	-				-1.3
4,287,915	-				+1.1
4,287,919	+				-0.5
4,287,919	+				+0.1
4,287,923	+				-1.1
4,287,924	+				+0.6
4,287,934	+				-0.2
4,287,942	-				-0.8
4,287,944	+				+0.0
4,287,959	+				+0.5
4,287,959	+				-0.7
4,288,018	+		GFF4272	0.21	-0.3
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