Strain Fitness in Sphingobium sp. HT1-2 around GFF4265

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,278,875	+				-0.2
4,278,875	+				-2.0
4,278,875	+				-0.1
4,278,875	+				-2.0
4,278,888	+				-1.5
4,278,888	+				+0.3
4,278,888	+				+0.3
4,278,904	-				+0.3
4,278,922	-				-1.5
4,279,000	-				-1.1
4,279,003	+				-0.0
4,279,011	-				+1.2
4,279,027	+				+0.1
4,279,035	-				-2.0
4,279,056	+				-2.9
4,279,061	+				+0.4
4,279,061	+				+0.3
4,279,061	+				+0.6
4,279,061	+				+0.3
4,279,061	+				+0.5
4,279,064	-				-0.6
4,279,069	-				+0.2
4,279,069	-				-0.3
4,279,069	-				-1.0
4,279,069	-				-2.5
4,279,069	-				-1.3
4,279,070	+				-0.0
4,279,070	+				+1.6
4,279,077	+				-1.3
4,279,077	+				+0.7
4,279,078	+				-0.1
4,279,085	-				+0.4
4,279,090	-				+0.5
4,279,092	-				-0.1
4,279,109	+				-1.5
4,279,116	+				+0.5
4,279,123	+				+0.2
4,279,124	-				+0.2
4,279,124	-				+0.5
4,279,124	-				-2.5
4,279,143	+				-1.8
4,279,143	+				-2.3
4,279,143	+				+0.9
4,279,143	+				-0.5
4,279,143	+				-0.4
4,279,145	+				+0.9
4,279,151	-				-0.1
4,279,151	-				+0.7
4,279,151	-				+0.4
4,279,151	-				-0.4
4,279,151	-				-0.4
4,279,151	-				-0.0
4,279,153	-				-0.4
4,279,153	-				+0.4
4,279,153	-				+0.4
4,279,153	-				-0.1
4,279,176	+				-2.0
4,279,180	-		GFF4264	0.11	-0.7
4,279,187	+		GFF4264	0.12	-0.4
4,279,190	-		GFF4264	0.12	-0.5
4,279,201	+		GFF4264	0.14	-1.0
4,279,210	-		GFF4264	0.16	-0.3
4,279,224	+		GFF4264	0.18	+0.2
4,279,224	+		GFF4264	0.18	-0.1
4,279,242	-		GFF4264	0.22	+0.4
4,279,269	-		GFF4264	0.27	-0.8
4,279,290	+		GFF4264	0.30	-0.3
4,279,290	+		GFF4264	0.30	-0.2
4,279,290	+		GFF4264	0.30	+0.9
4,279,292	+		GFF4264	0.31	-1.0
4,279,292	-		GFF4264	0.31	-2.1
4,279,298	-		GFF4264	0.32	-0.4
4,279,298	-		GFF4264	0.32	-1.1
4,279,298	-		GFF4264	0.32	+0.5
4,279,298	-		GFF4264	0.32	-0.7
4,279,298	-		GFF4264	0.32	-0.0
4,279,298	-		GFF4264	0.32	-1.0
4,279,309	+		GFF4264	0.34	-0.4
4,279,317	-		GFF4264	0.35	+0.5
4,279,319	+		GFF4264	0.35	-2.0
4,279,319	+		GFF4264	0.35	-0.2
4,279,321	+		GFF4264	0.36	+0.8
4,279,327	-		GFF4264	0.37	-0.1
4,279,327	-		GFF4264	0.37	-2.1
4,279,327	-		GFF4264	0.37	-0.1
4,279,329	-		GFF4264	0.37	-1.6
4,279,338	-		GFF4264	0.39	-0.2
4,279,348	-		GFF4264	0.41	-0.8
4,279,348	-		GFF4264	0.41	-0.4
4,279,387	+		GFF4264	0.48	-0.1
4,279,400	+		GFF4264	0.50	-1.2
4,279,400	+		GFF4264	0.50	+1.4
4,279,423	-		GFF4264	0.54	-1.5
4,279,463	-		GFF4264	0.61	-0.7
4,279,463	-		GFF4264	0.61	-0.7
4,279,464	+		GFF4264	0.61	+0.3
4,279,464	+		GFF4264	0.61	-1.3
4,279,465	-		GFF4264	0.62	-0.4
4,279,469	+		GFF4264	0.62	+0.2
4,279,472	-		GFF4264	0.63	-1.7
4,279,477	+		GFF4264	0.64	+0.1
4,279,477	+		GFF4264	0.64	+0.2
4,279,479	+		GFF4264	0.64	+0.8
4,279,479	-		GFF4264	0.64	-0.7
4,279,485	-		GFF4264	0.65	+1.4
4,279,485	-		GFF4264	0.65	+0.9
4,279,487	-		GFF4264	0.66	-1.9
4,279,510	-		GFF4264	0.70	-0.1
4,279,510	-		GFF4264	0.70	-0.1
4,279,511	+		GFF4264	0.70	-0.7
4,279,517	-		GFF4264	0.71	+0.3
4,279,517	-		GFF4264	0.71	-1.6
4,279,517	-		GFF4264	0.71	-0.1
4,279,573	+		GFF4264	0.81	-1.7
4,279,573	-		GFF4264	0.81	-0.3
4,279,581	-		GFF4264	0.82	-0.4
4,279,590	+		GFF4264	0.84	-0.1
4,279,590	+		GFF4264	0.84	-1.6
4,279,595	+		GFF4264	0.85	-0.3
4,279,595	+		GFF4264	0.85	-2.0
4,279,595	+		GFF4264	0.85	+1.6
4,279,595	+		GFF4264	0.85	+0.3
4,279,598	-		GFF4264	0.85	+1.3
4,279,603	+		GFF4264	0.86	-0.5
4,279,603	+		GFF4264	0.86	-0.7
4,279,603	+		GFF4264	0.86	+0.3
4,279,603	+		GFF4264	0.86	-1.0
4,279,603	-		GFF4264	0.86	-0.3
4,279,603	-		GFF4264	0.86	-2.5
4,279,603	-		GFF4264	0.86	-2.5
4,279,603	-		GFF4264	0.86	+0.3
4,279,603	-		GFF4264	0.86	-0.6
4,279,608	+		GFF4264	0.87	+0.1
4,279,611	-		GFF4264	0.88	-0.9
4,279,613	-		GFF4264	0.88	-0.1
4,279,616	+		GFF4264	0.89	+0.7
4,279,616	-		GFF4264	0.89	-1.3
4,279,626	+				-0.1
4,279,626	+				+1.1
4,279,626	+				-1.5
4,279,626	+				+1.1
4,279,631	+				-2.0
4,279,638	+				+0.0
4,279,639	+				-0.3
4,279,647	-				+1.4
4,279,661	+				-0.3
4,279,664	-				-2.9
4,279,666	+				-0.3
4,279,666	+				-0.2
4,279,666	+				+1.0
4,279,666	+				+0.4
4,279,666	+				+0.1
4,279,666	+				-0.8
4,279,672	+				+0.4
4,279,672	+				-1.3
4,279,674	-				-0.7
4,279,674	-				+0.2
4,279,674	-				+1.4
4,279,679	-				-1.6
4,279,680	-				-0.5
4,279,680	-				+0.4
4,279,680	-				-0.6
4,279,682	+				+0.9
4,279,682	+				+0.5
4,279,682	-				-0.5
4,279,683	+				-0.3
4,279,691	-				-0.8
4,279,691	-				-1.7
4,279,691	-				+0.2
4,279,691	-				+0.1
4,279,698	-				-1.1
4,279,714	-				-0.5
4,279,765	+				+0.5
4,279,765	+				-0.8
4,279,765	+				+0.6
4,279,773	-				-2.2
4,279,773	-				-0.2
4,279,773	-				-0.1
4,279,773	-				-2.4
4,279,773	-				-0.9
4,279,773	-				-0.2
4,279,783	-				-2.4
4,279,783	-				-1.9
4,279,821	-				+0.3
4,279,835	+				-0.4
4,279,840	+				+1.0
4,279,845	+				-0.3
4,279,845	+				+0.7
4,279,870	+				-0.1
4,279,878	+				-0.5
4,279,906	+		GFF4265	0.22	-0.0
4,279,906	+		GFF4265	0.22	+1.0
4,279,914	-		GFF4265	0.26	-0.7
4,279,916	+		GFF4265	0.27	-1.7
4,279,918	+		GFF4265	0.28	+1.1
4,279,926	-		GFF4265	0.32	-0.3
4,279,926	-		GFF4265	0.32	-0.7
4,279,926	-		GFF4265	0.32	+0.4
4,279,941	-		GFF4265	0.38	-0.4
4,279,941	-		GFF4265	0.38	-0.1
4,279,941	-		GFF4265	0.38	-0.0
4,279,947	-		GFF4265	0.41	-1.8
4,279,952	-		GFF4265	0.43	+0.3
4,279,957	-		GFF4265	0.46	+1.0
4,279,974	-		GFF4265	0.53	-1.4
4,279,975	-		GFF4265	0.54	+0.3
4,279,975	-		GFF4265	0.54	-0.6
4,279,981	+		GFF4265	0.57	-0.1
4,279,989	-		GFF4265	0.60	-0.0
4,279,993	-		GFF4265	0.62	-0.0
4,280,009	-		GFF4265	0.69	-2.1
4,280,030	+		GFF4265	0.79	+0.4
4,280,030	-		GFF4265	0.79	+0.8
4,280,035	+		GFF4265	0.81	-0.4
4,280,035	+		GFF4265	0.81	-0.5
4,280,035	+		GFF4265	0.81	-1.8
4,280,035	+		GFF4265	0.81	-0.1
4,280,035	+		GFF4265	0.81	-0.8
4,280,043	-		GFF4265	0.85	-1.1
4,280,043	-		GFF4265	0.85	-0.3
4,280,043	-		GFF4265	0.85	+0.3
4,280,057	+				+1.2
4,280,057	+				-0.2
4,280,057	+				-0.6
4,280,065	+				-0.3
4,280,065	-				-0.2
4,280,065	-				-2.5
4,280,077	+				-0.8
4,280,077	+				-1.2
4,280,085	-				+1.2
4,280,095	+				-1.1
4,280,103	-				+0.2
4,280,109	+				-0.5
4,280,112	-				+0.4
4,280,113	-				-1.3
4,280,117	-				-1.5
4,280,117	-				-1.5
4,280,121	+				+1.0
4,280,129	-				-0.1
4,280,139	+				-2.1
4,280,144	+				+0.8
4,280,147	-				+0.3
4,280,147	-				-0.3
4,280,149	-				-0.0
4,280,149	-				+0.2
4,280,149	-				-0.5
4,280,154	-				-0.8
4,280,156	+				-0.0
4,280,157	-				-1.2
4,280,164	-				-0.3
4,280,170	-				-1.8
4,280,172	-				+0.4
4,280,192	+				-0.0
4,280,198	+				-0.4
4,280,198	+				-2.1
4,280,198	+				-0.6
4,280,198	+				+0.5
4,280,200	-				-0.6
4,280,205	-				-0.1
4,280,206	-				-0.3
4,280,206	-				+0.2
4,280,213	+				+0.3
4,280,213	+				-0.5
4,280,213	+				-2.1
4,280,213	+				-0.0
4,280,213	+				-0.3
4,280,213	+				-0.9
4,280,213	+				+0.4
4,280,213	+				+1.1
4,280,213	+				+0.2
4,280,213	+				-1.3
4,280,221	-				-0.0
4,280,221	-				+0.4
4,280,221	-				+0.1
4,280,221	-				+0.6
4,280,221	-				-0.0
4,280,221	-				-0.5
4,280,221	-				-1.7
4,280,221	-				+0.3
4,280,221	-				+0.7
4,280,227	-				+0.2
4,280,227	-				+0.5
4,280,235	+				-1.5
4,280,236	-				-0.2
4,280,241	-				-1.3
4,280,241	-				+0.3
4,280,243	-				-0.3
4,280,250	+				+0.5
4,280,253	-				+0.1
4,280,264	-				-0.8
4,280,264	-				+1.0
4,280,269	-				-0.0
4,280,271	+				-0.1
4,280,271	+				-1.4
4,280,279	-				-0.3
4,280,279	-				-1.8
4,280,347	+				-0.0
4,280,369	-				+0.1
4,280,374	+				+1.0
4,280,379	-				-1.2
4,280,397	-				-0.1
4,280,399	+				-1.0
4,280,408	-				-1.9
4,280,411	-				-0.5
4,280,418	+				-1.6
4,280,418	+				-0.7
4,280,419	-				-0.2
4,280,426	-				-0.0
4,280,426	-				-0.0
4,280,426	-				-0.0
4,280,445	+				+0.4
4,280,460	+				-1.2
4,280,475	+				+0.5
4,280,477	-				-3.2
4,280,480	+				+0.0
4,280,480	+				-1.6
4,280,480	+				+0.1
4,280,483	-				-1.3
4,280,492	-				-0.0
4,280,556	-				-0.1
4,280,582	-				+0.6
4,280,582	-				+1.4
4,280,599	-				+0.9
4,280,600	-				-0.0
4,280,602	-				-1.8
4,280,624	+				+0.1
4,280,626	-				+0.6
4,280,679	-				-0.1
4,280,683	-				+0.2
4,280,684	-				-0.4
4,280,684	-				-1.0
4,280,693	+				-0.8
4,280,698	+				+0.3
4,280,708	+				-0.9
4,280,708	+				+0.3
4,280,716	-				-2.5
4,280,730	+				-1.2
4,280,735	-				-1.7
4,280,735	-				-0.9
4,280,757	+		GFF4266	0.14	-0.8
4,280,768	+		GFF4266	0.20	-0.8
4,280,768	-		GFF4266	0.20	-0.3
4,280,768	-		GFF4266	0.20	-0.4
4,280,787	+		GFF4266	0.31	+0.1
4,280,822	-		GFF4266	0.51	+0.7
4,280,845	-		GFF4266	0.64	-1.3
4,280,849	+		GFF4266	0.67	-0.7
4,280,851	-		GFF4266	0.68	+0.2
4,280,854	+		GFF4266	0.70	-0.7
4,280,861	+		GFF4266	0.74	-1.7
4,280,861	+		GFF4266	0.74	-0.1
4,280,861	+		GFF4266	0.74	-1.9
4,280,861	+		GFF4266	0.74	-1.1
4,280,869	-		GFF4266	0.78	+0.3
4,280,869	-		GFF4266	0.78	-2.7
4,280,869	-		GFF4266	0.78	+0.1
4,280,869	-		GFF4266	0.78	+0.5
4,280,869	-		GFF4266	0.78	-0.1
4,280,869	-		GFF4266	0.78	+0.5
4,280,869	-		GFF4266	0.78	-0.4
4,280,869	-		GFF4266	0.78	-2.3
4,280,869	-		GFF4266	0.78	-0.1
4,280,869	-		GFF4266	0.78	+1.4
4,280,869	-		GFF4266	0.78	-1.7
4,280,869	-		GFF4266	0.78	-1.4
4,280,869	-		GFF4266	0.78	+0.5
4,280,880	-		GFF4266	0.84	-0.5
4,280,891	-				+0.6
4,280,893	-				-1.4
4,280,893	-				+0.1
4,280,901	-				-1.6
4,280,904	+				+0.1
4,280,940	+				+0.7
4,280,999	+				+1.1
4,280,999	+				-2.3
4,280,999	+				-2.2
4,280,999	+				+0.5
4,280,999	+				+0.9
4,280,999	+				-0.7
4,280,999	+				+0.1
4,280,999	+				-1.8
4,280,999	+				-0.8
4,280,999	+				-2.0
4,280,999	+				-0.4
4,280,999	+				+0.9
4,280,999	+				+1.0
4,280,999	+				-1.7
4,280,999	+				-0.4
4,280,999	+				-2.0
4,280,999	+				-0.2
4,280,999	+				+0.4
4,280,999	+				-2.0
4,280,999	+				-0.4
4,280,999	+				-0.1
4,280,999	+				-1.1
4,280,999	+				-0.0
4,280,999	+				+0.4
4,280,999	+				+1.0
4,280,999	+				-1.0
4,280,999	+				-0.0
4,280,999	+				+0.6
4,280,999	+				+1.0
4,280,999	+				-0.5
4,280,999	+				-0.2
4,281,007	-				-0.4
4,281,007	-				+0.1
4,281,007	-				-0.0
4,281,007	-				+0.1
4,281,007	-				-1.9
4,281,007	-				+0.5
4,281,007	-				-0.8
4,281,007	-				+1.0
4,281,007	-				+0.9
4,281,007	-				+0.1
4,281,007	-				-0.2
4,281,007	-				-0.3
4,281,007	-				+0.8
4,281,007	-				-1.5
4,281,007	-				+0.3
4,281,007	-				-0.3
4,281,007	-				-1.6
4,281,007	-				+0.5
4,281,007	-				-0.0
4,281,007	-				-1.7
4,281,007	-				-0.4
4,281,007	-				-1.1
4,281,007	-				-1.8
4,281,007	-				+0.1
4,281,007	-				-0.2
4,281,007	-				-0.2
4,281,007	-				-0.5
4,281,007	-				+1.4
4,281,021	+				-2.1
4,281,021	+				-0.4
4,281,021	+				+0.5
4,281,021	+				-0.5
4,281,021	+				-2.1
4,281,021	+				+0.1
4,281,021	+				+0.3
4,281,021	+				-0.5
4,281,021	+				+0.8
4,281,021	+				+0.2
4,281,029	-				+0.8
4,281,029	-				-0.4
4,281,029	-				+0.8
4,281,029	-				-0.1
4,281,029	-				+0.1
4,281,029	-				-0.1
4,281,029	-				-0.3
4,281,029	-				-1.2
4,281,029	-				-0.0
4,281,029	-				-0.2
4,281,029	-				-0.3
4,281,041	+				-1.7
4,281,049	-				-2.4
4,281,063	-				-0.9