Strain Fitness in Sphingobium sp. HT1-2 around GFF4250

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,267,914	+		GFF4248	0.35	+1.2
4,267,917	+		GFF4248	0.35	-0.2
4,267,917	+		GFF4248	0.35	+0.1
4,267,918	+		GFF4248	0.35	+0.3
4,267,925	-		GFF4248	0.36	-1.5
4,267,928	+		GFF4248	0.36	+0.8
4,267,933	+		GFF4248	0.37	-1.4
4,267,935	+		GFF4248	0.37	-0.1
4,267,963	-		GFF4248	0.40	-3.0
4,267,963	-		GFF4248	0.40	-1.2
4,267,963	-		GFF4248	0.40	-0.4
4,267,965	+		GFF4248	0.40	-0.4
4,267,971	+		GFF4248	0.41	+0.4
4,267,979	-		GFF4248	0.42	-0.1
4,267,991	+		GFF4248	0.43	-0.1
4,267,991	+		GFF4248	0.43	-0.8
4,267,999	-		GFF4248	0.44	-0.4
4,267,999	-		GFF4248	0.44	-0.7
4,268,010	+		GFF4248	0.45	-1.0
4,268,021	-		GFF4248	0.47	+0.0
4,268,042	-		GFF4248	0.49	+0.2
4,268,042	-		GFF4248	0.49	-0.4
4,268,042	-		GFF4248	0.49	+0.8
4,268,042	-		GFF4248	0.49	-0.0
4,268,054	+		GFF4248	0.50	-0.8
4,268,054	+		GFF4248	0.50	-0.3
4,268,054	+		GFF4248	0.50	+0.5
4,268,054	+		GFF4248	0.50	-0.7
4,268,062	-		GFF4248	0.51	-0.3
4,268,062	-		GFF4248	0.51	-1.3
4,268,069	+		GFF4248	0.52	+0.6
4,268,069	+		GFF4248	0.52	-0.7
4,268,069	+		GFF4248	0.52	-0.7
4,268,069	+		GFF4248	0.52	-0.8
4,268,069	+		GFF4248	0.52	-0.5
4,268,069	+		GFF4248	0.52	-1.6
4,268,077	-		GFF4248	0.53	+0.2
4,268,077	-		GFF4248	0.53	+0.4
4,268,077	-		GFF4248	0.53	-0.6
4,268,077	-		GFF4248	0.53	+1.5
4,268,077	-		GFF4248	0.53	-0.4
4,268,077	-		GFF4248	0.53	-0.4
4,268,077	-		GFF4248	0.53	+0.7
4,268,084	+		GFF4248	0.54	+0.9
4,268,087	-		GFF4248	0.54	+0.0
4,268,089	+		GFF4248	0.54	-1.5
4,268,096	+		GFF4248	0.55	-0.7
4,268,096	+		GFF4248	0.55	-0.6
4,268,096	+		GFF4248	0.55	+0.5
4,268,097	-		GFF4248	0.55	-0.3
4,268,101	+		GFF4248	0.56	-0.3
4,268,101	+		GFF4248	0.56	+0.0
4,268,101	+		GFF4248	0.56	-0.1
4,268,104	-		GFF4248	0.56	-0.1
4,268,104	-		GFF4248	0.56	-0.5
4,268,104	-		GFF4248	0.56	+0.4
4,268,106	+		GFF4248	0.56	-1.0
4,268,106	+		GFF4248	0.56	+0.6
4,268,106	+		GFF4248	0.56	-0.3
4,268,106	+		GFF4248	0.56	-1.6
4,268,106	+		GFF4248	0.56	-0.1
4,268,109	-		GFF4248	0.57	-0.1
4,268,109	-		GFF4248	0.57	+0.1
4,268,109	-		GFF4248	0.57	-0.3
4,268,114	-		GFF4248	0.57	-1.1
4,268,114	-		GFF4248	0.57	+0.2
4,268,114	-		GFF4248	0.57	-0.4
4,268,114	-		GFF4248	0.57	+0.4
4,268,114	-		GFF4248	0.57	-1.0
4,268,114	-		GFF4248	0.57	-1.4
4,268,114	-		GFF4248	0.57	+0.3
4,268,114	-		GFF4248	0.57	+0.2
4,268,114	-		GFF4248	0.57	-1.6
4,268,121	+		GFF4248	0.58	-2.2
4,268,121	-		GFF4248	0.58	-0.8
4,268,126	+		GFF4248	0.59	-0.9
4,268,126	+		GFF4248	0.59	+0.2
4,268,147	+		GFF4248	0.61	-0.9
4,268,167	+		GFF4248	0.63	-0.7
4,268,167	+		GFF4248	0.63	-0.1
4,268,167	+		GFF4248	0.63	+0.6
4,268,167	+		GFF4248	0.63	-0.2
4,268,167	+		GFF4248	0.63	-0.5
4,268,167	+		GFF4248	0.63	+0.0
4,268,167	+		GFF4248	0.63	+0.2
4,268,167	+		GFF4248	0.63	+0.3
4,268,167	+		GFF4248	0.63	+1.5
4,268,167	+		GFF4248	0.63	-0.6
4,268,172	+		GFF4248	0.64	-1.9
4,268,175	-		GFF4248	0.64	+0.0
4,268,175	-		GFF4248	0.64	+0.3
4,268,175	-		GFF4248	0.64	+1.1
4,268,175	-		GFF4248	0.64	+1.2
4,268,175	-		GFF4248	0.64	+0.5
4,268,175	-		GFF4248	0.64	+1.1
4,268,180	-		GFF4248	0.65	-0.2
4,268,197	+		GFF4248	0.67	+0.4
4,268,203	-		GFF4248	0.67	-0.2
4,268,205	-		GFF4248	0.67	-0.5
4,268,220	-		GFF4248	0.69	-0.6
4,268,222	-		GFF4248	0.69	+0.0
4,268,248	+		GFF4248	0.72	+0.1
4,268,256	-		GFF4248	0.73	+0.1
4,268,296	+		GFF4248	0.78	-0.9
4,268,299	-		GFF4248	0.78	-0.3
4,268,309	-		GFF4248	0.79	-0.7
4,268,309	-		GFF4248	0.79	+0.4
4,268,314	+		GFF4248	0.80	+0.5
4,268,319	+		GFF4248	0.80	-0.6
4,268,327	-		GFF4248	0.81	+0.2
4,268,336	+		GFF4248	0.82	-0.5
4,268,341	+		GFF4248	0.83	-0.8
4,268,344	-		GFF4248	0.83	+0.6
4,268,346	+		GFF4248	0.83	+0.8
4,268,346	+		GFF4248	0.83	-0.2
4,268,346	+		GFF4248	0.83	+0.1
4,268,346	+		GFF4248	0.83	+0.5
4,268,346	+		GFF4248	0.83	-1.5
4,268,346	+		GFF4248	0.83	+1.6
4,268,346	+		GFF4248	0.83	+0.9
4,268,346	+		GFF4248	0.83	+0.4
4,268,346	+		GFF4248	0.83	-2.6
4,268,346	+		GFF4248	0.83	-0.5
4,268,346	+		GFF4248	0.83	-0.5
4,268,346	+		GFF4248	0.83	-0.7
4,268,346	+		GFF4248	0.83	-0.3
4,268,346	+		GFF4248	0.83	-0.0
4,268,346	+		GFF4248	0.83	+0.1
4,268,346	+		GFF4248	0.83	-1.2
4,268,346	+		GFF4248	0.83	+0.0
4,268,346	+		GFF4248	0.83	+0.5
4,268,346	+		GFF4248	0.83	-0.8
4,268,346	+		GFF4248	0.83	+0.4
4,268,346	+		GFF4248	0.83	-0.3
4,268,346	+		GFF4248	0.83	+0.5
4,268,346	+		GFF4248	0.83	-0.1
4,268,346	+		GFF4248	0.83	-0.9
4,268,346	+		GFF4248	0.83	-1.1
4,268,346	+		GFF4248	0.83	+0.8
4,268,346	+		GFF4248	0.83	-0.2
4,268,346	+		GFF4248	0.83	+0.9
4,268,346	+		GFF4248	0.83	-0.3
4,268,346	+		GFF4248	0.83	+0.2
4,268,346	+		GFF4248	0.83	-0.2
4,268,346	+		GFF4248	0.83	-2.2
4,268,346	+		GFF4248	0.83	-2.1
4,268,346	+		GFF4248	0.83	+0.4
4,268,346	+		GFF4248	0.83	-0.2
4,268,346	+		GFF4248	0.83	-0.8
4,268,347	+		GFF4248	0.84	+0.5
4,268,347	+		GFF4248	0.84	-1.0
4,268,352	+		GFF4248	0.84	-0.6
4,268,354	-		GFF4248	0.84	-0.2
4,268,354	-		GFF4248	0.84	-0.0
4,268,354	-		GFF4248	0.84	-1.0
4,268,354	-		GFF4248	0.84	+1.3
4,268,354	-		GFF4248	0.84	+0.7
4,268,354	-		GFF4248	0.84	-1.5
4,268,354	-		GFF4248	0.84	-1.2
4,268,354	-		GFF4248	0.84	+0.9
4,268,354	-		GFF4248	0.84	+1.8
4,268,354	-		GFF4248	0.84	-0.1
4,268,354	-		GFF4248	0.84	+0.6
4,268,354	-		GFF4248	0.84	-0.3
4,268,354	-		GFF4248	0.84	-1.2
4,268,354	-		GFF4248	0.84	-1.4
4,268,354	-		GFF4248	0.84	+1.1
4,268,354	-		GFF4248	0.84	+1.2
4,268,354	-		GFF4248	0.84	-0.6
4,268,354	-		GFF4248	0.84	-1.6
4,268,354	-		GFF4248	0.84	-1.7
4,268,354	-		GFF4248	0.84	+0.7
4,268,354	-		GFF4248	0.84	+0.1
4,268,354	-		GFF4248	0.84	-1.9
4,268,354	-		GFF4248	0.84	-0.2
4,268,354	-		GFF4248	0.84	-1.0
4,268,354	-		GFF4248	0.84	-0.0
4,268,354	-		GFF4248	0.84	-1.3
4,268,354	-		GFF4248	0.84	-2.4
4,268,354	-		GFF4248	0.84	-2.2
4,268,354	-		GFF4248	0.84	-0.7
4,268,354	-		GFF4248	0.84	-1.0
4,268,354	-		GFF4248	0.84	-0.4
4,268,354	-		GFF4248	0.84	-0.1
4,268,355	-		GFF4248	0.84	+0.5
4,268,357	+		GFF4248	0.85	+0.8
4,268,365	-		GFF4248	0.86	-0.6
4,268,400	+		GFF4248	0.89	+1.2
4,268,405	+				-1.0
4,268,405	+				+0.4
4,268,405	+				+0.5
4,268,405	+				+0.4
4,268,405	+				-1.6
4,268,412	+				+1.0
4,268,412	+				+0.5
4,268,412	+				-0.7
4,268,412	+				-3.5
4,268,413	-				+0.2
4,268,413	-				-1.3
4,268,413	-				-0.1
4,268,413	-				-0.3
4,268,413	-				-0.1
4,268,417	+				-0.6
4,268,420	-				-1.5
4,268,422	+				-2.1
4,268,428	-				-0.4
4,268,446	-				-0.5
4,268,452	+				-1.5
4,268,454	+				-1.8
4,268,485	+				-0.2
4,268,493	-				+0.3
4,268,494	+				+0.5
4,268,494	-				-1.4
4,268,502	-				-1.3
4,268,502	-				-0.2
4,268,550	-		GFF4249	0.12	-0.6
4,268,550	-		GFF4249	0.12	-1.6
4,268,563	+		GFF4249	0.16	+0.4
4,268,563	+		GFF4249	0.16	-0.7
4,268,571	-		GFF4249	0.19	+0.1
4,268,571	-		GFF4249	0.19	+0.2
4,268,572	-		GFF4249	0.19	+0.1
4,268,598	+		GFF4249	0.27	-0.1
4,268,644	+		GFF4249	0.42	+0.8
4,268,654	+		GFF4249	0.45	+1.3
4,268,654	+		GFF4249	0.45	+0.2
4,268,654	+		GFF4249	0.45	+0.0
4,268,654	+		GFF4249	0.45	-0.1
4,268,654	+		GFF4249	0.45	-1.8
4,268,662	-		GFF4249	0.48	-0.2
4,268,662	-		GFF4249	0.48	+0.0
4,268,662	-		GFF4249	0.48	+0.7
4,268,662	-		GFF4249	0.48	+0.8
4,268,736	-		GFF4249	0.71	+0.4
4,268,757	+		GFF4249	0.78	+0.4
4,268,765	-		GFF4249	0.80	-0.7
4,268,778	+		GFF4249	0.84	-0.1
4,268,778	+		GFF4249	0.84	+0.3
4,268,778	+		GFF4249	0.84	-2.0
4,268,778	+		GFF4249	0.84	+0.3
4,268,778	+		GFF4249	0.84	+0.5
4,268,778	+		GFF4249	0.84	+0.6
4,268,779	-		GFF4249	0.85	-0.3
4,268,779	-		GFF4249	0.85	-0.4
4,268,779	-		GFF4249	0.85	+1.0
4,268,786	-		GFF4249	0.87	-0.2
4,268,786	-		GFF4249	0.87	+0.4
4,268,786	-		GFF4249	0.87	-1.6
4,268,786	-		GFF4249	0.87	+0.5
4,268,786	-		GFF4249	0.87	-0.1
4,268,811	+				+0.4
4,268,811	+				+0.9
4,268,841	+				+0.1
4,268,849	-				-0.6
4,268,864	+				-2.2
4,268,871	-				+0.3
4,268,886	+				-1.7
4,268,887	+				+0.6
4,268,895	-				+0.2
4,268,907	+				+0.8
4,268,907	-				-1.8
4,268,912	+				+0.4
4,268,912	+				-0.8
4,268,922	+				+0.2
4,268,951	-		GFF4250	0.12	+0.1
4,268,951	-		GFF4250	0.12	-2.0
4,268,951	-		GFF4250	0.12	-0.1
4,268,960	+		GFF4250	0.14	+0.1
4,268,968	-		GFF4250	0.15	-0.2
4,268,994	+		GFF4250	0.20	-1.2
4,269,002	-		GFF4250	0.22	+0.1
4,269,002	-		GFF4250	0.22	+0.5
4,269,002	-		GFF4250	0.22	+0.3
4,269,007	-		GFF4250	0.23	-0.2
4,269,017	-		GFF4250	0.25	+0.6
4,269,018	+		GFF4250	0.25	+0.0
4,269,026	-		GFF4250	0.27	-1.0
4,269,047	+		GFF4250	0.31	-0.1
4,269,057	+		GFF4250	0.33	-0.2
4,269,091	-		GFF4250	0.39	-0.6
4,269,102	-		GFF4250	0.42	-0.8
4,269,114	+		GFF4250	0.44	-0.3
4,269,126	+		GFF4250	0.46	-2.3
4,269,127	+		GFF4250	0.46	-0.3
4,269,127	+		GFF4250	0.46	-0.1
4,269,132	+		GFF4250	0.47	+0.5
4,269,135	-		GFF4250	0.48	+0.0
4,269,137	+		GFF4250	0.48	+0.0
4,269,137	+		GFF4250	0.48	-0.4
4,269,137	+		GFF4250	0.48	-2.1
4,269,137	+		GFF4250	0.48	+0.8
4,269,137	+		GFF4250	0.48	-0.3
4,269,137	+		GFF4250	0.48	-3.5
4,269,145	-		GFF4250	0.50	-1.3
4,269,145	-		GFF4250	0.50	+0.5
4,269,147	+		GFF4250	0.50	-1.1
4,269,147	+		GFF4250	0.50	-2.2
4,269,147	+		GFF4250	0.50	-0.5
4,269,147	+		GFF4250	0.50	-0.2
4,269,147	+		GFF4250	0.50	-0.2
4,269,147	+		GFF4250	0.50	+2.0
4,269,147	+		GFF4250	0.50	-0.1
4,269,147	+		GFF4250	0.50	+0.3
4,269,155	-		GFF4250	0.52	-2.2
4,269,155	-		GFF4250	0.52	+0.9
4,269,155	-		GFF4250	0.52	+0.0
4,269,156	-		GFF4250	0.52	-2.2
4,269,160	-		GFF4250	0.53	+0.1
4,269,165	-		GFF4250	0.54	-0.3
4,269,193	+		GFF4250	0.59	+1.3
4,269,235	+		GFF4250	0.68	+0.1
4,269,240	-		GFF4250	0.69	+1.3
4,269,252	+		GFF4250	0.71	+2.1
4,269,258	-		GFF4250	0.72	+0.2
4,269,258	-		GFF4250	0.72	+0.7
4,269,258	-		GFF4250	0.72	+0.3
4,269,262	+		GFF4250	0.73	+1.5
4,269,264	+		GFF4250	0.73	+0.1
4,269,272	-		GFF4250	0.75	+1.4
4,269,272	-		GFF4250	0.75	-0.7
4,269,277	-		GFF4250	0.76	-2.4
4,269,316	+		GFF4250	0.84	-0.3
4,269,319	+		GFF4250	0.84	-0.2
4,269,324	+		GFF4250	0.85	-2.3
4,269,327	-		GFF4250	0.86	+0.6
4,269,329	+		GFF4250	0.86	-0.4
4,269,373	+				+0.1
4,269,381	-				-2.0
4,269,381	-				-0.5
4,269,381	-				+0.1
4,269,386	-				+1.5
4,269,406	-				+0.4
4,269,408	+				+1.2
4,269,416	-				-2.7
4,269,426	+				-0.4
4,269,426	+				-0.2
4,269,426	+				+1.1
4,269,426	+				-0.2
4,269,427	-				-1.8
4,269,434	-				-1.8
4,269,438	+				+0.3
4,269,439	-				+0.4
4,269,444	+				-1.6
4,269,452	-				-1.1
4,269,452	-				-0.3
4,269,452	-				+0.0
4,269,453	-				-2.4
4,269,468	-				-0.9
4,269,469	+				+0.3
4,269,469	+				-0.2
4,269,477	-				-0.1
4,269,493	+				-0.6
4,269,506	+				-0.1
4,269,511	+		GFF4251	0.11	-0.1
4,269,511	+		GFF4251	0.11	-0.1
4,269,511	+		GFF4251	0.11	-0.7
4,269,514	-		GFF4251	0.11	+0.3
4,269,516	+		GFF4251	0.11	-0.2
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4,269,940	-		GFF4251	0.71	-0.4
4,269,945	+		GFF4251	0.72	-2.0
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4,270,002	-		GFF4251	0.80	-2.1
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4,270,055	+		GFF4251	0.88	-1.8
4,270,129	+				-0.2
4,270,145	-				-0.9
4,270,149	+				-2.7
4,270,152	-				-0.5
4,270,157	+				-0.6
4,270,157	-				+0.3
4,270,157	-				+0.6
4,270,157	-				-0.3
4,270,183	-				+0.6
4,270,183	-				-2.2
4,270,183	-				+0.3
4,270,193	-				+0.6
4,270,200	+				-0.6
4,270,200	+				-0.1
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4,270,208	-				-0.2
4,270,208	-				-1.0
4,270,208	-				+0.3
4,270,208	-				-1.6
4,270,208	-				-2.3
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4,270,212	+				+0.2
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4,270,229	-				+0.2
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4,270,243	+				-1.7
4,270,252	-				+0.5
4,270,252	-				+0.5
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