Strain Fitness in Sphingobium sp. HT1-2 around GFF4241

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,259,031	-				+0.6
4,259,040	+				-0.5
4,259,048	-				-1.9
4,259,048	-				-0.4
4,259,048	-				-0.4
4,259,048	-				-1.8
4,259,048	-				-0.6
4,259,048	-				-1.1
4,259,082	+				-1.7
4,259,084	+				-0.6
4,259,086	+				-1.2
4,259,092	-				+0.4
4,259,098	+				-1.8
4,259,098	-				-0.6
4,259,119	+				-1.7
4,259,120	-				-0.8
4,259,120	-				+0.4
4,259,132	-				-1.2
4,259,141	-				-0.8
4,259,220	-		GFF4239	0.20	-2.2
4,259,220	-		GFF4239	0.20	+0.1
4,259,589	+				-3.3
4,259,635	+				-0.6
4,259,635	+				-0.9
4,259,638	-				-1.9
4,259,683	-				-0.8
4,259,692	+				-0.5
4,259,692	+				+0.6
4,259,695	-				-0.1
4,259,700	-				-0.3
4,259,710	-				+1.3
4,259,716	+				+0.7
4,259,717	-				-0.8
4,259,717	-				-1.4
4,259,724	-				-0.4
4,259,729	-				-0.4
4,259,739	-				-1.1
4,259,739	-				-1.4
4,259,739	-				-1.8
4,259,739	-				+0.1
4,259,781	-				-1.2
4,259,834	-				-1.6
4,259,853	+				-0.8
4,259,858	+				+0.9
4,259,858	+				+0.1
4,259,858	+				-1.4
4,259,858	+				-0.7
4,259,863	+				-0.3
4,259,866	-				-0.4
4,259,866	-				+0.1
4,259,866	-				-0.9
4,259,866	-				+0.1
4,259,866	-				+0.2
4,259,869	+				+0.3
4,259,869	+				+0.1
4,259,869	+				-1.4
4,259,869	+				-1.6
4,259,869	+				+1.5
4,259,869	+				-0.5
4,259,869	+				-0.7
4,259,869	+				-1.0
4,259,869	+				-0.1
4,259,869	+				-0.7
4,259,869	+				+0.4
4,259,869	+				-1.5
4,259,869	+				+0.6
4,259,869	+				-1.2
4,259,869	+				-2.0
4,259,872	-				-0.2
4,259,872	-				-1.3
4,259,874	+				+0.7
4,259,874	+				-1.2
4,259,877	-				-1.3
4,259,877	-				+0.0
4,259,877	-				-1.1
4,259,877	-				-0.8
4,259,877	-				-0.2
4,259,877	-				+0.7
4,259,877	-				-1.1
4,259,877	-				-0.8
4,259,877	-				-1.4
4,259,877	-				-0.9
4,259,877	-				-1.5
4,259,877	-				-0.0
4,259,877	-				+0.4
4,259,877	-				-0.7
4,259,877	-				-1.6
4,259,877	-				+0.3
4,259,877	-				+0.8
4,259,877	-				-2.2
4,259,877	-				-0.1
4,259,877	-				-0.1
4,259,877	-				-0.4
4,259,877	-				+0.2
4,259,882	-				-0.7
4,259,882	-				+0.4
4,259,882	-				+0.5
4,259,892	+				-0.6
4,259,892	+				+0.7
4,259,892	+				+0.0
4,259,893	+				+0.5
4,259,894	+				+0.1
4,259,894	+				-0.4
4,259,894	+				-0.4
4,259,894	+				-0.9
4,259,894	+				+0.4
4,259,894	+				-1.1
4,259,894	+				+0.7
4,259,899	+				-1.0
4,259,900	-				-0.3
4,259,900	-				+0.3
4,259,902	-				-0.2
4,259,902	-				+0.2
4,259,902	-				-0.4
4,259,902	-				+0.6
4,259,902	-				-0.9
4,259,910	+				-2.3
4,259,910	+				-0.5
4,259,945	-				-0.9
4,259,951	+				+0.9
4,259,951	+				-0.1
4,259,951	+				-1.8
4,259,951	+				-1.1
4,259,951	+				-0.9
4,259,951	+				-0.7
4,259,954	-				-0.6
4,259,956	+				-1.9
4,259,956	-				+0.2
4,259,959	-				-0.2
4,259,959	-				-1.4
4,259,959	-				-0.3
4,259,959	-				-1.7
4,259,979	+				-1.4
4,259,980	-				-0.1
4,259,990	+				+0.7
4,259,998	+				-1.2
4,259,998	+				+0.4
4,259,998	+				-1.4
4,259,998	+				+0.2
4,259,998	-				-0.1
4,260,000	+				-1.8
4,260,000	+				+0.4
4,260,000	+				+0.4
4,260,000	+				-0.7
4,260,000	+				+0.4
4,260,000	+				-0.7
4,260,001	-				+0.7
4,260,005	+				-0.7
4,260,006	-				+1.7
4,260,006	-				+1.0
4,260,008	-				+0.8
4,260,008	-				+0.6
4,260,008	-				+1.0
4,260,013	-				-0.5
4,260,016	+				+0.0
4,260,016	+				-0.1
4,260,016	+				-1.4
4,260,024	-				-1.1
4,260,040	-				-0.2
4,260,092	-		GFF4241	0.20	-0.2
4,260,094	+		GFF4241	0.21	-1.8
4,260,099	+		GFF4241	0.22	+0.1
4,260,119	+		GFF4241	0.27	-0.1
4,260,155	+		GFF4241	0.37	-0.4
4,260,156	-		GFF4241	0.37	+0.2
4,260,156	-		GFF4241	0.37	-0.4
4,260,169	+		GFF4241	0.41	-1.0
4,260,169	+		GFF4241	0.41	+1.0
4,260,175	+		GFF4241	0.43	+1.2
4,260,177	-		GFF4241	0.43	+1.1
4,260,177	-		GFF4241	0.43	-2.1
4,260,177	-		GFF4241	0.43	+1.2
4,260,194	-		GFF4241	0.48	+0.1
4,260,196	+		GFF4241	0.48	+0.0
4,260,204	-		GFF4241	0.50	+0.8
4,260,215	+		GFF4241	0.53	-1.5
4,260,241	+		GFF4241	0.60	+0.7
4,260,243	+		GFF4241	0.61	-0.4
4,260,244	-		GFF4241	0.61	-0.5
4,260,246	-		GFF4241	0.62	-1.0
4,260,248	+		GFF4241	0.62	-0.4
4,260,248	+		GFF4241	0.62	-1.0
4,260,249	-		GFF4241	0.63	+0.2
4,260,254	-		GFF4241	0.64	-0.3
4,260,263	+		GFF4241	0.66	+0.3
4,260,265	+		GFF4241	0.67	-0.8
4,260,265	+		GFF4241	0.67	-1.3
4,260,265	+		GFF4241	0.67	+0.7
4,260,273	-		GFF4241	0.69	-0.9
4,260,277	-		GFF4241	0.70	-0.6
4,260,287	-		GFF4241	0.73	-0.4
4,260,293	+		GFF4241	0.75	-1.8
4,260,300	+		GFF4241	0.76	+0.4
4,260,300	+		GFF4241	0.76	-0.9
4,260,321	+		GFF4241	0.82	+0.2
4,260,321	+		GFF4241	0.82	+0.3
4,260,328	+		GFF4241	0.84	+0.6
4,260,328	+		GFF4241	0.84	-2.3
4,260,328	-		GFF4241	0.84	+0.5
4,260,336	-		GFF4241	0.86	-0.4
4,260,336	-		GFF4241	0.86	+0.1
4,260,360	+				-1.7
4,260,375	-				-0.4
4,260,375	-				-1.1
4,260,375	-				+0.6
4,260,387	+				+0.3
4,260,387	+				+0.8
4,260,395	-				+0.3
4,260,397	+				+1.6
4,260,405	-				-1.4
4,260,430	+				-0.7
4,260,430	+				-1.6
4,260,431	-				-0.2
4,260,453	+				-2.8
4,260,453	+				-0.6
4,260,456	-				-0.3
4,260,503	-				-0.4
4,260,517	-				-0.9
4,260,529	+				+0.7
4,260,529	+				+0.6
4,260,529	+				+0.5
4,260,537	-				-2.1
4,260,537	-				+0.2
4,260,537	-				-1.7
4,260,537	-				-0.1
4,260,539	+				+0.3
4,260,539	+				+1.1
4,260,546	-				-1.7
4,260,548	-				-1.4
4,260,555	+				+0.5
4,260,555	+				-1.3
4,260,555	+				-0.4
4,260,555	+				-1.6
4,260,555	+				-0.4
4,260,555	+				+0.3
4,260,555	+				+0.9
4,260,555	+				-1.0
4,260,555	+				+0.7
4,260,555	+				+0.6
4,260,557	-				+0.4
4,260,563	-				-0.2
4,260,563	-				+1.3
4,260,563	-				+0.2
4,260,563	-				-1.0
4,260,563	-				-0.9
4,260,563	-				-1.7
4,260,563	-				+0.6
4,260,563	-				-0.9
4,260,563	-				+0.7
4,260,563	-				-2.0
4,260,563	-				+0.5
4,260,563	-				-0.2
4,260,563	-				+0.1
4,260,563	-				-0.2
4,260,563	-				+0.3
4,260,563	-				-2.9
4,260,563	-				+0.1
4,260,563	-				-1.1
4,260,563	-				-3.0
4,260,563	-				+1.7
4,260,564	-				+0.0
4,260,583	+				-1.3
4,260,588	+				+0.0
4,260,591	+				+0.9
4,260,591	+				-0.1
4,260,598	+		GFF4242	0.10	-1.9
4,260,598	+		GFF4242	0.10	-2.0
4,260,598	+		GFF4242	0.10	-1.2
4,260,598	+		GFF4242	0.10	-2.4
4,260,598	+		GFF4242	0.10	-0.4
4,260,598	+		GFF4242	0.10	+0.1
4,260,599	-		GFF4242	0.10	+0.2
4,260,599	-		GFF4242	0.10	+0.1
4,260,599	-		GFF4242	0.10	+0.5
4,260,608	-		GFF4242	0.11	+1.3
4,260,618	-		GFF4242	0.11	-0.6
4,260,618	-		GFF4242	0.11	-0.9
4,260,621	+		GFF4242	0.11	-2.7
4,260,621	+		GFF4242	0.11	-0.6
4,260,624	-		GFF4242	0.11	-1.7
4,260,635	+		GFF4242	0.12	-0.6
4,260,649	-		GFF4242	0.13	+0.6
4,260,650	-		GFF4242	0.13	-1.6
4,260,677	-		GFF4242	0.14	-0.7
4,260,677	-		GFF4242	0.14	+0.7
4,260,692	+		GFF4242	0.15	-0.6
4,260,692	+		GFF4242	0.15	-0.7
4,260,711	+		GFF4242	0.16	-0.3
4,260,711	+		GFF4242	0.16	-2.4
4,260,719	-		GFF4242	0.16	-0.5
4,260,719	-		GFF4242	0.16	+0.7
4,260,719	-		GFF4242	0.16	+0.9
4,260,723	+		GFF4242	0.16	-0.1
4,260,731	-		GFF4242	0.17	-0.1
4,260,762	+		GFF4242	0.18	-0.4
4,260,772	+		GFF4242	0.18	-0.1
4,260,772	+		GFF4242	0.18	-0.6
4,260,781	+		GFF4242	0.19	-0.5
4,260,786	+		GFF4242	0.19	-0.6
4,260,786	+		GFF4242	0.19	-0.7
4,260,794	-		GFF4242	0.19	+0.8
4,260,794	-		GFF4242	0.19	+0.7
4,260,795	-		GFF4242	0.20	-1.3
4,260,806	-		GFF4242	0.20	-0.3
4,260,808	-		GFF4242	0.20	+0.8
4,260,808	-		GFF4242	0.20	+0.5
4,260,816	-		GFF4242	0.21	+0.3
4,260,836	-		GFF4242	0.21	-0.5
4,260,836	-		GFF4242	0.21	-0.9
4,260,836	-		GFF4242	0.21	-0.8
4,260,836	-		GFF4242	0.21	-0.3
4,260,836	-		GFF4242	0.21	+0.5
4,260,880	+		GFF4242	0.24	-0.3
4,260,888	-		GFF4242	0.24	-0.8
4,260,900	+		GFF4242	0.25	-3.3
4,260,926	+		GFF4242	0.26	-0.6
4,260,929	+		GFF4242	0.26	-0.6
4,260,952	+		GFF4242	0.27	-0.3
4,260,954	+		GFF4242	0.27	-0.2
4,260,961	+		GFF4242	0.27	+0.2
4,260,964	+		GFF4242	0.28	-0.1
4,260,967	-		GFF4242	0.28	-2.2
4,260,979	+		GFF4242	0.28	+0.8
4,260,979	+		GFF4242	0.28	+0.5
4,260,979	+		GFF4242	0.28	+0.4
4,260,987	-		GFF4242	0.29	-1.8
4,260,987	-		GFF4242	0.29	-0.5
4,260,995	+		GFF4242	0.29	-1.0
4,260,995	+		GFF4242	0.29	-0.1
4,260,997	+		GFF4242	0.29	-2.2
4,260,997	+		GFF4242	0.29	-1.1
4,261,005	-		GFF4242	0.29	+0.3
4,261,019	+		GFF4242	0.30	+0.4
4,261,019	+		GFF4242	0.30	-0.6
4,261,021	+		GFF4242	0.30	-0.7
4,261,051	+		GFF4242	0.32	-1.2
4,261,057	+		GFF4242	0.32	+0.8
4,261,065	-		GFF4242	0.32	-2.9
4,261,068	+		GFF4242	0.32	+0.4
4,261,076	-		GFF4242	0.33	+0.5
4,261,123	-		GFF4242	0.35	+1.1
4,261,155	+		GFF4242	0.37	-0.3
4,261,156	+		GFF4242	0.37	-0.7
4,261,162	+		GFF4242	0.37	+0.0
4,261,163	-		GFF4242	0.37	-0.9
4,261,168	-		GFF4242	0.37	+0.7
4,261,192	-		GFF4242	0.38	-1.0
4,261,193	-		GFF4242	0.38	-0.2
4,261,194	+		GFF4242	0.38	-0.7
4,261,194	+		GFF4242	0.38	-1.8
4,261,194	+		GFF4242	0.38	+0.1
4,261,194	+		GFF4242	0.38	-0.6
4,261,194	+		GFF4242	0.38	+0.4
4,261,202	-		GFF4242	0.39	+0.0
4,261,202	-		GFF4242	0.39	-1.5
4,261,204	+		GFF4242	0.39	+0.0
4,261,213	-		GFF4242	0.39	+1.0
4,261,213	-		GFF4242	0.39	-0.4
4,261,218	-		GFF4242	0.40	-0.1
4,261,237	-		GFF4242	0.40	-0.1
4,261,239	+		GFF4242	0.41	-1.5
4,261,239	+		GFF4242	0.41	+0.6
4,261,239	+		GFF4242	0.41	+1.9
4,261,239	+		GFF4242	0.41	+0.9
4,261,239	+		GFF4242	0.41	-1.3
4,261,239	+		GFF4242	0.41	+0.8
4,261,239	+		GFF4242	0.41	-0.5
4,261,244	+		GFF4242	0.41	-0.6
4,261,244	+		GFF4242	0.41	-0.5
4,261,244	+		GFF4242	0.41	-0.5
4,261,246	+		GFF4242	0.41	-1.9
4,261,246	+		GFF4242	0.41	-1.2
4,261,246	+		GFF4242	0.41	+0.1
4,261,247	-		GFF4242	0.41	+0.7
4,261,247	-		GFF4242	0.41	+0.1
4,261,247	-		GFF4242	0.41	+0.4
4,261,247	-		GFF4242	0.41	+0.5
4,261,249	+		GFF4242	0.41	-0.8
4,261,250	-		GFF4242	0.41	+1.0
4,261,252	-		GFF4242	0.41	+1.7
4,261,252	-		GFF4242	0.41	+0.1
4,261,252	-		GFF4242	0.41	+0.5
4,261,252	-		GFF4242	0.41	+0.1
4,261,252	-		GFF4242	0.41	-0.7
4,261,252	-		GFF4242	0.41	-0.5
4,261,252	-		GFF4242	0.41	-0.4
4,261,252	-		GFF4242	0.41	-0.1
4,261,252	-		GFF4242	0.41	+0.1
4,261,254	-		GFF4242	0.41	+1.7
4,261,254	-		GFF4242	0.41	+0.2
4,261,254	-		GFF4242	0.41	+1.2
4,261,255	-		GFF4242	0.41	+0.3
4,261,265	+		GFF4242	0.42	-2.0
4,261,282	-		GFF4242	0.43	-0.3
4,261,294	-		GFF4242	0.43	-1.1
4,261,304	-		GFF4242	0.44	-0.2
4,261,308	-		GFF4242	0.44	-1.1
4,261,316	-		GFF4242	0.44	+0.1
4,261,316	-		GFF4242	0.44	+0.4
4,261,316	-		GFF4242	0.44	-1.6
4,261,316	-		GFF4242	0.44	-0.1
4,261,318	+		GFF4242	0.44	+0.9
4,261,318	+		GFF4242	0.44	-1.6
4,261,318	+		GFF4242	0.44	-0.6
4,261,321	-		GFF4242	0.44	+0.3
4,261,324	-		GFF4242	0.45	+0.1
4,261,326	-		GFF4242	0.45	-1.7
4,261,326	-		GFF4242	0.45	+0.2
4,261,326	-		GFF4242	0.45	-0.5
4,261,367	+		GFF4242	0.47	-0.4
4,261,368	+		GFF4242	0.47	-1.7
4,261,373	+		GFF4242	0.47	-0.1
4,261,373	+		GFF4242	0.47	+0.0
4,261,374	+		GFF4242	0.47	+0.9
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