Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4181 and GFF4182 overlap by 4 nucleotides GFF4182 and GFF4183 are separated by 15 nucleotides GFF4183 and GFF4184 overlap by 4 nucleotides GFF4184 and GFF4185 are separated by 231 nucleotides
GFF4181 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (flavodoxin) (EC 1.17.7.3), at 4,199,906 to 4,201,051
GFF4181
GFF4182 - hypothetical protein, at 4,201,048 to 4,201,278
GFF4182
GFF4183 - hypothetical protein, at 4,201,294 to 4,202,211
GFF4183
GFF4184 - Histone acetyltransferase HPA2 and related acetyltransferases, at 4,202,208 to 4,202,699
GFF4184
GFF4185 - DNA translocase FtsK, at 4,202,931 to 4,205,255
GFF4185
Position (kb) 4201
4202
4203 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4200.987 kb on + strand at 4200.988 kb on + strand at 4201.011 kb on - strand at 4201.023 kb on + strand at 4201.023 kb on + strand at 4201.023 kb on + strand at 4201.033 kb on + strand at 4201.033 kb on + strand at 4201.033 kb on + strand at 4201.033 kb on + strand at 4201.033 kb on + strand at 4201.033 kb on + strand at 4201.033 kb on + strand at 4201.033 kb on + strand at 4201.033 kb on + strand at 4201.033 kb on + strand at 4201.036 kb on - strand at 4201.036 kb on - strand at 4201.041 kb on - strand at 4201.041 kb on - strand at 4201.041 kb on - strand at 4201.041 kb on - strand at 4201.041 kb on - strand at 4201.041 kb on - strand at 4201.041 kb on - strand at 4201.058 kb on + strand at 4201.061 kb on - strand at 4201.061 kb on - strand at 4201.066 kb on - strand at 4201.118 kb on + strand, within GFF4182 at 4201.124 kb on + strand, within GFF4182 at 4201.141 kb on - strand, within GFF4182 at 4201.141 kb on - strand, within GFF4182 at 4201.144 kb on + strand, within GFF4182 at 4201.160 kb on + strand, within GFF4182 at 4201.160 kb on + strand, within GFF4182 at 4201.160 kb on + strand, within GFF4182 at 4201.171 kb on + strand, within GFF4182 at 4201.190 kb on - strand, within GFF4182 at 4201.190 kb on - strand, within GFF4182 at 4201.208 kb on - strand, within GFF4182 at 4201.209 kb on + strand, within GFF4182 at 4201.265 kb on - strand at 4201.267 kb on + strand at 4201.280 kb on + strand at 4201.288 kb on - strand at 4201.313 kb on - strand at 4201.315 kb on + strand at 4201.325 kb on + strand at 4201.333 kb on - strand at 4201.338 kb on + strand at 4201.398 kb on - strand, within GFF4183 at 4201.399 kb on + strand, within GFF4183 at 4201.400 kb on + strand, within GFF4183 at 4201.400 kb on + strand, within GFF4183 at 4201.408 kb on - strand, within GFF4183 at 4201.428 kb on - strand, within GFF4183 at 4201.434 kb on + strand, within GFF4183 at 4201.434 kb on + strand, within GFF4183 at 4201.434 kb on + strand, within GFF4183 at 4201.434 kb on + strand, within GFF4183 at 4201.434 kb on + strand, within GFF4183 at 4201.434 kb on + strand, within GFF4183 at 4201.434 kb on + strand, within GFF4183 at 4201.434 kb on + strand, within GFF4183 at 4201.434 kb on + strand, within GFF4183 at 4201.434 kb on + strand, within GFF4183 at 4201.434 kb on + strand, within GFF4183 at 4201.434 kb on + strand, within GFF4183 at 4201.434 kb on + strand, within GFF4183 at 4201.442 kb on - strand, within GFF4183 at 4201.442 kb on - strand, within GFF4183 at 4201.442 kb on - strand, within GFF4183 at 4201.442 kb on - strand, within GFF4183 at 4201.442 kb on - strand, within GFF4183 at 4201.442 kb on - strand, within GFF4183 at 4201.442 kb on - strand, within GFF4183 at 4201.442 kb on - strand, within GFF4183 at 4201.455 kb on - strand, within GFF4183 at 4201.461 kb on + strand, within GFF4183 at 4201.473 kb on - strand, within GFF4183 at 4201.476 kb on + strand, within GFF4183 at 4201.484 kb on + strand, within GFF4183 at 4201.489 kb on + strand, within GFF4183 at 4201.494 kb on + strand, within GFF4183 at 4201.499 kb on + strand, within GFF4183 at 4201.522 kb on - strand, within GFF4183 at 4201.533 kb on + strand, within GFF4183 at 4201.560 kb on - strand, within GFF4183 at 4201.596 kb on + strand, within GFF4183 at 4201.596 kb on + strand, within GFF4183 at 4201.604 kb on - strand, within GFF4183 at 4201.609 kb on + strand, within GFF4183 at 4201.611 kb on - strand, within GFF4183 at 4201.612 kb on - strand, within GFF4183 at 4201.614 kb on + strand, within GFF4183 at 4201.643 kb on + strand, within GFF4183 at 4201.645 kb on + strand, within GFF4183 at 4201.653 kb on - strand, within GFF4183 at 4201.679 kb on - strand, within GFF4183 at 4201.710 kb on + strand, within GFF4183 at 4201.710 kb on + strand, within GFF4183 at 4201.715 kb on + strand, within GFF4183 at 4201.715 kb on + strand, within GFF4183 at 4201.718 kb on - strand, within GFF4183 at 4201.721 kb on + strand, within GFF4183 at 4201.721 kb on + strand, within GFF4183 at 4201.723 kb on - strand, within GFF4183 at 4201.752 kb on + strand, within GFF4183 at 4201.760 kb on - strand, within GFF4183 at 4201.786 kb on + strand, within GFF4183 at 4201.786 kb on + strand, within GFF4183 at 4201.786 kb on + strand, within GFF4183 at 4201.791 kb on + strand, within GFF4183 at 4201.791 kb on + strand, within GFF4183 at 4201.794 kb on - strand, within GFF4183 at 4201.794 kb on - strand, within GFF4183 at 4201.794 kb on - strand, within GFF4183 at 4201.794 kb on - strand, within GFF4183 at 4201.794 kb on - strand, within GFF4183 at 4201.794 kb on - strand, within GFF4183 at 4201.798 kb on + strand, within GFF4183 at 4201.798 kb on + strand, within GFF4183 at 4201.806 kb on - strand, within GFF4183 at 4201.847 kb on - strand, within GFF4183 at 4201.849 kb on + strand, within GFF4183 at 4201.885 kb on + strand, within GFF4183 at 4201.897 kb on - strand, within GFF4183 at 4201.901 kb on - strand, within GFF4183 at 4201.917 kb on + strand, within GFF4183 at 4201.920 kb on - strand, within GFF4183 at 4201.925 kb on - strand, within GFF4183 at 4201.943 kb on - strand, within GFF4183 at 4201.948 kb on - strand, within GFF4183 at 4201.948 kb on - strand, within GFF4183 at 4201.977 kb on + strand, within GFF4183 at 4201.978 kb on + strand, within GFF4183 at 4201.978 kb on + strand, within GFF4183 at 4201.980 kb on - strand, within GFF4183 at 4201.986 kb on - strand, within GFF4183 at 4202.001 kb on + strand, within GFF4183 at 4202.001 kb on + strand, within GFF4183 at 4202.001 kb on + strand, within GFF4183 at 4202.001 kb on + strand, within GFF4183 at 4202.001 kb on + strand, within GFF4183 at 4202.002 kb on + strand, within GFF4183 at 4202.009 kb on - strand, within GFF4183 at 4202.009 kb on - strand, within GFF4183 at 4202.018 kb on - strand, within GFF4183 at 4202.019 kb on + strand, within GFF4183 at 4202.056 kb on + strand, within GFF4183 at 4202.064 kb on - strand, within GFF4183 at 4202.082 kb on - strand, within GFF4183 at 4202.091 kb on - strand, within GFF4183 at 4202.144 kb on + strand at 4202.151 kb on + strand at 4202.159 kb on - strand at 4202.187 kb on - strand at 4202.187 kb on - strand at 4202.187 kb on - strand at 4202.210 kb on + strand at 4202.225 kb on - strand at 4202.230 kb on - strand at 4202.230 kb on - strand at 4202.244 kb on + strand at 4202.246 kb on + strand at 4202.299 kb on + strand, within GFF4184 at 4202.306 kb on + strand, within GFF4184 at 4202.314 kb on - strand, within GFF4184 at 4202.342 kb on + strand, within GFF4184 at 4202.342 kb on + strand, within GFF4184 at 4202.342 kb on + strand, within GFF4184 at 4202.342 kb on + strand, within GFF4184 at 4202.401 kb on + strand, within GFF4184 at 4202.409 kb on - strand, within GFF4184 at 4202.443 kb on + strand, within GFF4184 at 4202.450 kb on - strand, within GFF4184 at 4202.455 kb on + strand, within GFF4184 at 4202.546 kb on + strand, within GFF4184 at 4202.574 kb on - strand, within GFF4184 at 4202.579 kb on - strand, within GFF4184 at 4202.598 kb on + strand, within GFF4184 at 4202.625 kb on - strand, within GFF4184 at 4202.631 kb on + strand, within GFF4184 at 4202.633 kb on + strand, within GFF4184 at 4202.633 kb on + strand, within GFF4184 at 4202.643 kb on + strand, within GFF4184 at 4202.666 kb on + strand at 4202.666 kb on + strand at 4202.669 kb on - strand at 4202.694 kb on + strand at 4202.694 kb on + strand at 4202.694 kb on + strand at 4202.699 kb on + strand at 4202.725 kb on + strand at 4202.725 kb on + strand at 4202.725 kb on + strand at 4202.725 kb on + strand at 4202.728 kb on - strand at 4202.733 kb on - strand at 4202.733 kb on - strand at 4202.733 kb on - strand at 4202.738 kb on - strand at 4202.739 kb on + strand at 4202.750 kb on + strand at 4202.783 kb on - strand at 4202.805 kb on + strand at 4202.837 kb on - strand at 4202.839 kb on - strand at 4202.841 kb on + strand at 4202.849 kb on - strand at 4202.851 kb on + strand at 4202.859 kb on - strand at 4202.874 kb on - strand at 4202.922 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 4,200,987 + +0.7 4,200,988 + -0.3 4,201,011 - -1.5 4,201,023 + -2.0 4,201,023 + -0.7 4,201,023 + +1.0 4,201,033 + +0.5 4,201,033 + -3.1 4,201,033 + -0.1 4,201,033 + -1.9 4,201,033 + -0.5 4,201,033 + -1.6 4,201,033 + -1.5 4,201,033 + -0.2 4,201,033 + +0.3 4,201,033 + -0.5 4,201,036 - -0.5 4,201,036 - +0.2 4,201,041 - -0.9 4,201,041 - +0.2 4,201,041 - -1.8 4,201,041 - +0.2 4,201,041 - -0.6 4,201,041 - -0.4 4,201,041 - -0.7 4,201,058 + +0.5 4,201,061 - -0.6 4,201,061 - -0.6 4,201,066 - -2.4 4,201,118 + GFF4182 0.30 -1.7 4,201,124 + GFF4182 0.33 -0.1 4,201,141 - GFF4182 0.40 -0.4 4,201,141 - GFF4182 0.40 -0.6 4,201,144 + GFF4182 0.42 +0.2 4,201,160 + GFF4182 0.48 -0.6 4,201,160 + GFF4182 0.48 -1.3 4,201,160 + GFF4182 0.48 -0.1 4,201,171 + GFF4182 0.53 -0.3 4,201,190 - GFF4182 0.61 -2.2 4,201,190 - GFF4182 0.61 +0.7 4,201,208 - GFF4182 0.69 +1.0 4,201,209 + GFF4182 0.70 -0.2 4,201,265 - +0.1 4,201,267 + +0.2 4,201,280 + +0.9 4,201,288 - +0.3 4,201,313 - +0.4 4,201,315 + +1.0 4,201,325 + +0.2 4,201,333 - -1.3 4,201,338 + -0.4 4,201,398 - GFF4183 0.11 -0.0 4,201,399 + GFF4183 0.11 -0.3 4,201,400 + GFF4183 0.12 -2.0 4,201,400 + GFF4183 0.12 +0.2 4,201,408 - GFF4183 0.12 +0.5 4,201,428 - GFF4183 0.15 -0.5 4,201,434 + GFF4183 0.15 +1.0 4,201,434 + GFF4183 0.15 -0.9 4,201,434 + GFF4183 0.15 -1.2 4,201,434 + GFF4183 0.15 +0.0 4,201,434 + GFF4183 0.15 -1.2 4,201,434 + GFF4183 0.15 -0.7 4,201,434 + GFF4183 0.15 -1.7 4,201,434 + GFF4183 0.15 -0.4 4,201,434 + GFF4183 0.15 -1.0 4,201,434 + GFF4183 0.15 +0.9 4,201,434 + GFF4183 0.15 +2.3 4,201,434 + GFF4183 0.15 +0.6 4,201,434 + GFF4183 0.15 -0.8 4,201,442 - GFF4183 0.16 -2.9 4,201,442 - GFF4183 0.16 +0.8 4,201,442 - GFF4183 0.16 -0.3 4,201,442 - GFF4183 0.16 -0.7 4,201,442 - GFF4183 0.16 +0.8 4,201,442 - GFF4183 0.16 -1.0 4,201,442 - GFF4183 0.16 +0.1 4,201,442 - GFF4183 0.16 +0.8 4,201,455 - GFF4183 0.18 -3.2 4,201,461 + GFF4183 0.18 -1.1 4,201,473 - GFF4183 0.19 -1.2 4,201,476 + GFF4183 0.20 +0.2 4,201,484 + GFF4183 0.21 -0.2 4,201,489 + GFF4183 0.21 -1.7 4,201,494 + GFF4183 0.22 -0.4 4,201,499 + GFF4183 0.22 -0.7 4,201,522 - GFF4183 0.25 -1.2 4,201,533 + GFF4183 0.26 -0.2 4,201,560 - GFF4183 0.29 -0.2 4,201,596 + GFF4183 0.33 -1.7 4,201,596 + GFF4183 0.33 +0.1 4,201,604 - GFF4183 0.34 -1.7 4,201,609 + GFF4183 0.34 +0.0 4,201,611 - GFF4183 0.35 -1.5 4,201,612 - GFF4183 0.35 -0.5 4,201,614 + GFF4183 0.35 -0.4 4,201,643 + GFF4183 0.38 -0.0 4,201,645 + GFF4183 0.38 -0.1 4,201,653 - GFF4183 0.39 +0.3 4,201,679 - GFF4183 0.42 -1.4 4,201,710 + GFF4183 0.45 -0.8 4,201,710 + GFF4183 0.45 -2.1 4,201,715 + GFF4183 0.46 -0.1 4,201,715 + GFF4183 0.46 -2.0 4,201,718 - GFF4183 0.46 +0.7 4,201,721 + GFF4183 0.47 -0.9 4,201,721 + GFF4183 0.47 +0.4 4,201,723 - GFF4183 0.47 +2.1 4,201,752 + GFF4183 0.50 +0.6 4,201,760 - GFF4183 0.51 +0.0 4,201,786 + GFF4183 0.54 +0.4 4,201,786 + GFF4183 0.54 +1.2 4,201,786 + GFF4183 0.54 -0.1 4,201,791 + GFF4183 0.54 -0.1 4,201,791 + GFF4183 0.54 -1.4 4,201,794 - GFF4183 0.54 -0.2 4,201,794 - GFF4183 0.54 +0.2 4,201,794 - GFF4183 0.54 -0.4 4,201,794 - GFF4183 0.54 -0.1 4,201,794 - GFF4183 0.54 -0.1 4,201,794 - GFF4183 0.54 +0.3 4,201,798 + GFF4183 0.55 -0.5 4,201,798 + GFF4183 0.55 -0.6 4,201,806 - GFF4183 0.56 -2.4 4,201,847 - GFF4183 0.60 -0.8 4,201,849 + GFF4183 0.60 +0.2 4,201,885 + GFF4183 0.64 -2.8 4,201,897 - GFF4183 0.66 -0.3 4,201,901 - GFF4183 0.66 +0.2 4,201,917 + GFF4183 0.68 +0.5 4,201,920 - GFF4183 0.68 -0.2 4,201,925 - GFF4183 0.69 -0.6 4,201,943 - GFF4183 0.71 +0.1 4,201,948 - GFF4183 0.71 -0.3 4,201,948 - GFF4183 0.71 -0.4 4,201,977 + GFF4183 0.74 +0.8 4,201,978 + GFF4183 0.75 -0.5 4,201,978 + GFF4183 0.75 -0.4 4,201,980 - GFF4183 0.75 +0.8 4,201,986 - GFF4183 0.75 -1.6 4,202,001 + GFF4183 0.77 -0.1 4,202,001 + GFF4183 0.77 -1.3 4,202,001 + GFF4183 0.77 -1.2 4,202,001 + GFF4183 0.77 +0.9 4,202,001 + GFF4183 0.77 +0.1 4,202,002 + GFF4183 0.77 +0.7 4,202,009 - GFF4183 0.78 +0.6 4,202,009 - GFF4183 0.78 -0.1 4,202,018 - GFF4183 0.79 +0.5 4,202,019 + GFF4183 0.79 +0.5 4,202,056 + GFF4183 0.83 -1.8 4,202,064 - GFF4183 0.84 -0.9 4,202,082 - GFF4183 0.86 -0.3 4,202,091 - GFF4183 0.87 -0.6 4,202,144 + -1.1 4,202,151 + +1.4 4,202,159 - -0.4 4,202,187 - +0.5 4,202,187 - +0.0 4,202,187 - -0.5 4,202,210 + -0.7 4,202,225 - -0.0 4,202,230 - -1.7 4,202,230 - -1.6 4,202,244 + +0.7 4,202,246 + -2.4 4,202,299 + GFF4184 0.18 -0.4 4,202,306 + GFF4184 0.20 -1.8 4,202,314 - GFF4184 0.22 +0.8 4,202,342 + GFF4184 0.27 -0.2 4,202,342 + GFF4184 0.27 -0.0 4,202,342 + GFF4184 0.27 +0.5 4,202,342 + GFF4184 0.27 +0.3 4,202,401 + GFF4184 0.39 +0.7 4,202,409 - GFF4184 0.41 -2.4 4,202,443 + GFF4184 0.48 +0.4 4,202,450 - GFF4184 0.49 -0.0 4,202,455 + GFF4184 0.50 -1.2 4,202,546 + GFF4184 0.69 -2.8 4,202,574 - GFF4184 0.74 +0.1 4,202,579 - GFF4184 0.75 -2.2 4,202,598 + GFF4184 0.79 +1.0 4,202,625 - GFF4184 0.85 -0.3 4,202,631 + GFF4184 0.86 +0.1 4,202,633 + GFF4184 0.86 -1.9 4,202,633 + GFF4184 0.86 -0.7 4,202,643 + GFF4184 0.88 +0.6 4,202,666 + +0.4 4,202,666 + -2.4 4,202,669 - -1.1 4,202,694 + -0.2 4,202,694 + -0.7 4,202,694 + +0.1 4,202,699 + +0.3 4,202,725 + +0.4 4,202,725 + +0.2 4,202,725 + -1.7 4,202,725 + -0.0 4,202,728 - +1.2 4,202,733 - -1.8 4,202,733 - -1.7 4,202,733 - +0.1 4,202,738 - -1.8 4,202,739 + +0.6 4,202,750 + -0.6 4,202,783 - -0.6 4,202,805 + -0.6 4,202,837 - +0.2 4,202,839 - -0.6 4,202,841 + -0.7 4,202,849 - -0.7 4,202,851 + -0.9 4,202,859 - +1.2 4,202,874 - -1.7 4,202,922 + -0.9
Or see this region's nucleotide sequence