Strain Fitness in Sphingobium sp. HT1-2 around GFF4148

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,173,671	-				-0.4
4,173,711	-				+1.3
4,173,741	+				+0.7
4,173,744	-				-0.2
4,173,749	-		GFF4147	0.11	+1.4
4,173,765	-		GFF4147	0.15	+0.3
4,173,765	-		GFF4147	0.15	-1.1
4,173,765	-		GFF4147	0.15	-1.1
4,173,765	-		GFF4147	0.15	+0.3
4,173,765	-		GFF4147	0.15	-0.2
4,173,775	-		GFF4147	0.17	-1.2
4,173,775	-		GFF4147	0.17	-1.3
4,173,783	-		GFF4147	0.19	+0.9
4,173,845	-		GFF4147	0.32	-0.6
4,173,850	-		GFF4147	0.34	+1.0
4,173,891	-		GFF4147	0.43	+0.6
4,173,917	-		GFF4147	0.49	-0.1
4,173,917	-		GFF4147	0.49	+1.6
4,173,919	-		GFF4147	0.49	-0.6
4,173,952	-		GFF4147	0.56	-0.3
4,173,971	-		GFF4147	0.61	+0.9
4,173,987	-		GFF4147	0.64	-0.8
4,173,987	-		GFF4147	0.64	+0.7
4,173,987	-		GFF4147	0.64	-0.3
4,174,007	-		GFF4147	0.69	-0.9
4,174,027	-		GFF4147	0.73	-0.3
4,174,027	-		GFF4147	0.73	-2.5
4,174,034	-		GFF4147	0.75	-0.4
4,174,034	-		GFF4147	0.75	+0.7
4,174,034	-		GFF4147	0.75	-2.4
4,174,054	-		GFF4147	0.79	-1.5
4,174,054	-		GFF4147	0.79	-0.5
4,174,054	-		GFF4147	0.79	-0.4
4,174,054	-		GFF4147	0.79	-0.5
4,174,054	-		GFF4147	0.79	-1.1
4,174,054	-		GFF4147	0.79	+0.3
4,174,054	-		GFF4147	0.79	+0.5
4,174,054	-		GFF4147	0.79	-1.5
4,174,054	-		GFF4147	0.79	-0.9
4,174,054	-		GFF4147	0.79	-0.2
4,174,054	-		GFF4147	0.79	-0.5
4,174,112	-				+0.0
4,174,162	-				-2.3
4,174,194	-				-0.1
4,174,210	+				-0.5
4,174,210	+				-0.9
4,174,210	+				+0.0
4,174,210	+				+0.5
4,174,218	-				+0.0
4,174,227	+				+0.7
4,174,227	+				-0.1
4,174,227	+				-0.4
4,174,227	+				-0.1
4,174,235	-				+0.5
4,174,235	-				-0.2
4,174,243	+				-0.7
4,174,247	+				-0.3
4,174,260	+				+0.2
4,174,268	+				+0.7
4,174,269	+				-0.5
4,174,269	+				-1.6
4,174,274	+				+0.6
4,174,275	-				-0.3
4,174,277	-				-0.1
4,174,277	-				-1.5
4,174,279	+				+1.1
4,174,285	-				-0.5
4,174,285	-				+0.5
4,174,287	-				+1.0
4,174,287	-				+0.2
4,174,287	-				-1.3
4,174,287	-				-0.7
4,174,318	-				+0.2
4,174,693	+		GFF4148	0.43	+0.2
4,174,703	+		GFF4148	0.44	-1.2
4,174,721	+		GFF4148	0.47	+0.9
4,174,736	+		GFF4148	0.49	+0.9
4,174,736	+		GFF4148	0.49	+0.4
4,174,801	+		GFF4148	0.58	+0.1
4,174,808	+		GFF4148	0.59	+0.2
4,174,880	+		GFF4148	0.68	+0.4
4,174,881	+		GFF4148	0.69	-1.2
4,174,901	-		GFF4148	0.71	-0.7
4,174,960	+		GFF4148	0.79	-0.1
4,174,973	-		GFF4148	0.81	+0.1
4,175,039	+				+1.3
4,175,039	+				+0.9
4,175,070	-				-1.6
4,175,121	+				-0.4
4,175,128	-				-0.5
4,175,129	-				+0.7
4,175,156	+				+0.5
4,175,179	+				-0.5
4,175,184	+				+0.6
4,175,191	+				-1.9
4,175,196	+				+0.4
4,175,199	-				-1.5
4,175,201	+				+0.2
4,175,201	+				+0.9
4,175,201	+				+0.4
4,175,209	-				+0.7
4,175,209	-				-0.3
4,175,209	-				-0.8
4,175,209	-				-0.5
4,175,209	-				-0.7
4,175,227	+		GFF4149	0.14	-1.1
4,175,234	+		GFF4149	0.16	-1.5
4,175,235	+		GFF4149	0.16	-0.7
4,175,243	-		GFF4149	0.18	-2.2
4,175,258	-		GFF4149	0.22	+0.0
4,175,283	+		GFF4149	0.28	+0.9
4,175,283	+		GFF4149	0.28	+0.8
4,175,283	+		GFF4149	0.28	-0.7
4,175,283	+		GFF4149	0.28	-1.9
4,175,283	+		GFF4149	0.28	-1.3
4,175,283	+		GFF4149	0.28	+0.4
4,175,283	+		GFF4149	0.28	+1.0
4,175,285	+		GFF4149	0.29	-0.2
4,175,285	+		GFF4149	0.29	-1.9
4,175,291	-		GFF4149	0.30	+1.3
4,175,291	-		GFF4149	0.30	+0.3
4,175,291	-		GFF4149	0.30	+0.4
4,175,291	-		GFF4149	0.30	-0.1
4,175,291	-		GFF4149	0.30	+0.0
4,175,291	-		GFF4149	0.30	+1.0
4,175,291	-		GFF4149	0.30	+1.3
4,175,291	-		GFF4149	0.30	-2.2
4,175,291	-		GFF4149	0.30	-0.7
4,175,291	-		GFF4149	0.30	-0.6
4,175,291	-		GFF4149	0.30	-0.5
4,175,291	-		GFF4149	0.30	-0.7
4,175,291	-		GFF4149	0.30	-2.1
4,175,291	-		GFF4149	0.30	+0.1
4,175,291	-		GFF4149	0.30	+0.1
4,175,291	-		GFF4149	0.30	-0.3
4,175,293	+		GFF4149	0.31	+0.5
4,175,293	+		GFF4149	0.31	+0.1
4,175,301	-		GFF4149	0.33	+0.1
4,175,315	+		GFF4149	0.36	-0.4
4,175,323	-		GFF4149	0.38	-2.2
4,175,323	-		GFF4149	0.38	-1.1
4,175,323	-		GFF4149	0.38	+0.1
4,175,332	+		GFF4149	0.40	-1.3
4,175,355	-		GFF4149	0.46	-0.5
4,175,391	-		GFF4149	0.55	+1.3
4,175,425	+		GFF4149	0.64	+0.4
4,175,430	+		GFF4149	0.65	-1.0
4,175,432	-		GFF4149	0.65	+0.1
4,175,438	-		GFF4149	0.67	+0.7
4,175,438	-		GFF4149	0.67	-1.3
4,175,441	-		GFF4149	0.68	-2.3
4,175,453	-		GFF4149	0.71	-1.1
4,175,460	+		GFF4149	0.72	-1.7
4,175,460	+		GFF4149	0.72	-0.4
4,175,460	+		GFF4149	0.72	-0.0
4,175,462	-		GFF4149	0.73	-0.5
4,175,468	-		GFF4149	0.74	-0.6
4,175,468	-		GFF4149	0.74	-1.9
4,175,490	-		GFF4149	0.80	+0.4
4,175,492	+		GFF4149	0.80	-2.3
4,175,510	-		GFF4149	0.85	-1.8
4,175,516	-		GFF4149	0.86	-1.3
4,175,516	-		GFF4149	0.86	+0.0
4,175,516	-		GFF4149	0.86	+0.0
4,175,516	-		GFF4149	0.86	-2.0
4,175,516	-		GFF4149	0.86	+0.6
4,175,516	-		GFF4149	0.86	-0.2
4,175,516	-		GFF4149	0.86	+0.9
4,175,539	+				+0.5
4,175,557	-				-1.4
4,175,575	+				-0.4
4,175,575	+				+0.3
4,175,575	+				-0.4
4,175,575	+				-0.9
4,175,575	+				-1.7
4,175,575	+				-0.2
4,175,575	+				-1.7
4,175,575	+				+1.3
4,175,580	+				-1.7
4,175,582	+				+0.4
4,175,582	+				-0.7
4,175,582	-				-0.3
4,175,583	-				+0.4
4,175,583	-				-1.7
4,175,583	-				-0.4
4,175,583	-				-0.0
4,175,590	+				+0.3
4,175,590	+				-1.5
4,175,590	+				+0.3
4,175,593	-				+0.0
4,175,598	-				-1.6
4,175,613	+		GFF4150	0.11	-0.1
4,175,618	+		GFF4150	0.13	-1.4
4,175,652	+		GFF4150	0.23	-2.0
4,175,660	+		GFF4150	0.26	-1.7
4,175,660	-		GFF4150	0.26	-2.0
4,175,661	+		GFF4150	0.26	-1.0
4,175,669	-		GFF4150	0.28	-0.5
4,175,669	-		GFF4150	0.28	-1.4
4,175,717	+		GFF4150	0.43	-0.7
4,175,750	+		GFF4150	0.53	+0.5
4,175,754	-		GFF4150	0.55	-0.7
4,175,758	-		GFF4150	0.56	+0.4
4,175,766	+		GFF4150	0.58	-1.1
4,175,793	-		GFF4150	0.67	-1.8
4,175,795	+		GFF4150	0.67	+1.2
4,175,805	+		GFF4150	0.70	-0.7
4,175,805	+		GFF4150	0.70	+0.9
4,175,806	+		GFF4150	0.71	-0.0
4,175,806	+		GFF4150	0.71	+0.1
4,175,814	-		GFF4150	0.73	+0.1
4,175,814	-		GFF4150	0.73	+0.2
4,175,814	-		GFF4150	0.73	+0.2
4,175,814	-		GFF4150	0.73	+0.3
4,175,814	-		GFF4150	0.73	-1.5
4,175,814	-		GFF4150	0.73	-1.8
4,175,814	-		GFF4150	0.73	-0.3
4,175,823	-		GFF4150	0.76	-0.6
4,175,833	-		GFF4150	0.79	-1.1
4,175,857	-		GFF4150	0.86	-0.2
4,175,882	+				+0.8
4,175,890	-				-0.3
4,175,900	+				-1.8
4,175,900	+				-1.0
4,175,908	-				-0.6
4,175,908	-				-0.3
4,175,908	-				-1.5
4,175,930	+				+0.9
4,175,930	+				-2.3
4,175,936	-				-0.2
4,175,937	-				+1.0
4,175,938	-				-0.9
4,175,956	-				+0.1
4,175,989	-				+0.0
4,175,989	-				-0.2
4,176,018	+				+0.1
4,176,041	+				+1.1
4,176,056	+		GFF4151	0.11	-2.1
4,176,056	+		GFF4151	0.11	-1.8
4,176,056	+		GFF4151	0.11	-0.1
4,176,056	+		GFF4151	0.11	-0.2
4,176,056	+		GFF4151	0.11	-2.5
4,176,056	+		GFF4151	0.11	-2.5
4,176,056	+		GFF4151	0.11	-0.0
4,176,064	-		GFF4151	0.12	+0.3
4,176,064	-		GFF4151	0.12	+0.8
4,176,064	-		GFF4151	0.12	+0.2
4,176,064	-		GFF4151	0.12	-0.1
4,176,068	+		GFF4151	0.13	-1.0
4,176,068	+		GFF4151	0.13	-1.1
4,176,068	+		GFF4151	0.13	-0.2
4,176,073	+		GFF4151	0.14	-2.6
4,176,073	+		GFF4151	0.14	+0.0
4,176,074	+		GFF4151	0.14	-0.9
4,176,076	-		GFF4151	0.14	+0.3
4,176,076	-		GFF4151	0.14	-0.5
4,176,076	-		GFF4151	0.14	+0.7
4,176,076	-		GFF4151	0.14	-0.8
4,176,076	-		GFF4151	0.14	-1.3
4,176,076	-		GFF4151	0.14	-2.6
4,176,079	+		GFF4151	0.15	-1.8
4,176,081	-		GFF4151	0.15	-1.0
4,176,081	-		GFF4151	0.15	-0.1
4,176,081	-		GFF4151	0.15	+0.8
4,176,081	-		GFF4151	0.15	-0.1
4,176,084	+		GFF4151	0.16	+0.6
4,176,087	-		GFF4151	0.16	+0.2
4,176,089	+		GFF4151	0.17	-0.6