Strain Fitness in Sphingobium sp. HT1-2 around GFF4143

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,168,029	-		GFF4142	0.63	+0.8
4,168,031	+		GFF4142	0.63	+0.7
4,168,044	-		GFF4142	0.63	-0.1
4,168,049	+		GFF4142	0.64	+0.8
4,168,049	+		GFF4142	0.64	+0.7
4,168,049	+		GFF4142	0.64	+1.0
4,168,057	-		GFF4142	0.64	+0.3
4,168,111	-		GFF4142	0.67	+0.3
4,168,129	-		GFF4142	0.67	+0.4
4,168,135	-		GFF4142	0.68	-1.5
4,168,145	+		GFF4142	0.68	-0.2
4,168,145	+		GFF4142	0.68	+1.6
4,168,153	-		GFF4142	0.69	+2.1
4,168,153	-		GFF4142	0.69	-1.7
4,168,153	-		GFF4142	0.69	+0.7
4,168,153	-		GFF4142	0.69	+0.7
4,168,163	-		GFF4142	0.69	+1.6
4,168,180	-		GFF4142	0.70	-1.5
4,168,180	-		GFF4142	0.70	+0.4
4,168,182	+		GFF4142	0.70	-0.4
4,168,182	+		GFF4142	0.70	-0.2
4,168,182	+		GFF4142	0.70	+0.4
4,168,182	+		GFF4142	0.70	+1.5
4,168,182	+		GFF4142	0.70	+0.1
4,168,182	+		GFF4142	0.70	+0.5
4,168,182	+		GFF4142	0.70	+0.5
4,168,182	+		GFF4142	0.70	-2.7
4,168,182	+		GFF4142	0.70	+0.6
4,168,182	+		GFF4142	0.70	+0.8
4,168,182	+		GFF4142	0.70	+1.0
4,168,182	+		GFF4142	0.70	+0.5
4,168,182	+		GFF4142	0.70	+0.6
4,168,182	+		GFF4142	0.70	-0.2
4,168,182	+		GFF4142	0.70	-2.1
4,168,182	+		GFF4142	0.70	+0.5
4,168,182	+		GFF4142	0.70	-0.1
4,168,183	+		GFF4142	0.70	+0.8
4,168,190	-		GFF4142	0.70	-1.6
4,168,190	-		GFF4142	0.70	+1.1
4,168,190	-		GFF4142	0.70	+1.6
4,168,190	-		GFF4142	0.70	-0.6
4,168,190	-		GFF4142	0.70	-1.3
4,168,190	-		GFF4142	0.70	-1.8
4,168,190	-		GFF4142	0.70	-0.5
4,168,190	-		GFF4142	0.70	-1.0
4,168,190	-		GFF4142	0.70	-0.9
4,168,190	-		GFF4142	0.70	+0.2
4,168,190	-		GFF4142	0.70	+0.3
4,168,190	-		GFF4142	0.70	+0.4
4,168,190	-		GFF4142	0.70	-1.4
4,168,190	-		GFF4142	0.70	-0.1
4,168,190	-		GFF4142	0.70	-0.4
4,168,190	-		GFF4142	0.70	+0.5
4,168,190	-		GFF4142	0.70	-0.3
4,168,190	-		GFF4142	0.70	+0.2
4,168,190	-		GFF4142	0.70	+0.3
4,168,190	-		GFF4142	0.70	-0.1
4,168,190	-		GFF4142	0.70	-0.4
4,168,190	-		GFF4142	0.70	+0.1
4,168,190	-		GFF4142	0.70	-0.7
4,168,190	-		GFF4142	0.70	-1.7
4,168,191	-		GFF4142	0.70	-1.1
4,168,192	+		GFF4142	0.70	+0.1
4,168,202	-		GFF4142	0.71	-0.8
4,168,202	-		GFF4142	0.71	+1.2
4,168,202	-		GFF4142	0.71	-0.6
4,168,234	+		GFF4142	0.72	-0.5
4,168,242	-		GFF4142	0.73	+0.1
4,168,252	+		GFF4142	0.73	-0.2
4,168,253	+		GFF4142	0.73	+0.0
4,168,260	-		GFF4142	0.74	-1.6
4,168,261	-		GFF4142	0.74	+0.8
4,168,261	-		GFF4142	0.74	+1.2
4,168,283	-		GFF4142	0.75	-0.6
4,168,318	+		GFF4142	0.77	-2.2
4,168,318	+		GFF4142	0.77	-0.7
4,168,321	-		GFF4142	0.77	-0.5
4,168,323	+		GFF4142	0.77	+0.8
4,168,326	-		GFF4142	0.77	+0.5
4,168,338	-		GFF4142	0.77	-0.2
4,168,346	-		GFF4142	0.78	+0.0
4,168,350	+		GFF4142	0.78	-0.5
4,168,351	+		GFF4142	0.78	+0.7
4,168,358	-		GFF4142	0.78	-1.0
4,168,358	-		GFF4142	0.78	+0.2
4,168,358	-		GFF4142	0.78	-0.5
4,168,359	-		GFF4142	0.78	-0.2
4,168,372	+		GFF4142	0.79	-0.1
4,168,407	+		GFF4142	0.81	-0.2
4,168,407	+		GFF4142	0.81	+0.4
4,168,407	+		GFF4142	0.81	+0.4
4,168,415	-		GFF4142	0.81	-2.1
4,168,415	-		GFF4142	0.81	-0.2
4,168,415	-		GFF4142	0.81	+0.5
4,168,476	+		GFF4142	0.84	+0.9
4,168,481	+		GFF4142	0.84	-0.3
4,168,481	+		GFF4142	0.84	+0.0
4,168,489	-		GFF4142	0.85	+0.3
4,168,514	+		GFF4142	0.86	-1.7
4,168,521	+		GFF4142	0.86	-0.9
4,168,522	-		GFF4142	0.86	-0.9
4,168,529	-		GFF4142	0.87	+0.6
4,168,531	+		GFF4142	0.87	-0.2
4,168,531	+		GFF4142	0.87	+0.4
4,168,539	-		GFF4142	0.87	-0.2
4,168,559	-		GFF4142	0.88	-0.3
4,168,559	-		GFF4142	0.88	+0.2
4,168,581	+		GFF4142	0.89	-0.4
4,168,581	+		GFF4142	0.89	-0.1
4,168,581	+		GFF4142	0.89	+0.4
4,168,587	+		GFF4142	0.89	-1.3
4,168,589	+		GFF4142	0.89	-0.5
4,168,589	-		GFF4142	0.89	-0.2
4,168,627	+				-0.8
4,168,635	-				-0.4
4,168,649	-				+0.8
4,168,657	+				-1.5
4,168,657	+				-0.3
4,168,665	-				-0.7
4,168,687	+				-0.4
4,168,687	+				+0.1
4,168,687	+				-1.7
4,168,692	+				+0.9
4,168,695	-				-1.2
4,168,695	-				-1.5
4,168,724	+				-1.6
4,168,733	+				-2.0
4,168,740	+				-2.5
4,168,740	+				+0.6
4,168,792	-				-0.3
4,168,792	-				+0.4
4,168,802	-				-0.2
4,168,802	-				-2.0
4,168,802	-				+0.7
4,168,807	-				-0.4
4,168,827	+				+0.1
4,168,838	+				+1.1
4,168,838	+				-1.5
4,168,838	+				+0.2
4,168,838	+				-0.5
4,168,846	-				-0.9
4,168,846	-				+0.5
4,168,846	-				+0.5
4,168,846	-				+0.8
4,168,846	-				-0.2
4,168,846	-				-1.8
4,168,846	-				+0.3
4,168,846	-				-0.4
4,168,846	-				-1.1
4,168,846	-				-0.9
4,168,846	-				-0.6
4,168,848	+				+1.1
4,168,848	+				-0.6
4,168,856	-				-1.5
4,168,885	+				-1.7
4,168,891	-				-1.3
4,168,892	-				-0.0
4,168,900	+				+0.4
4,168,900	+				-0.7
4,168,931	+				-2.3
4,168,931	+				-1.6
4,168,939	-				-0.9
4,168,941	+				+0.9
4,168,944	-				+0.5
4,168,949	-				-1.8
4,168,958	-				+0.2
4,168,963	-				-0.3
4,168,983	+				-1.1
4,168,989	-				-0.4
4,169,005	-				-1.8
4,169,042	+		GFF4143	0.10	-0.7
4,169,049	+		GFF4143	0.12	-0.5
4,169,088	+		GFF4143	0.22	-1.5
4,169,105	+		GFF4143	0.26	-0.7
4,169,115	+		GFF4143	0.28	-0.9
4,169,120	+		GFF4143	0.30	-0.6
4,169,123	-		GFF4143	0.30	+1.4
4,169,125	+		GFF4143	0.31	-0.8
4,169,133	-		GFF4143	0.33	+0.7
4,169,133	-		GFF4143	0.33	+0.6
4,169,135	+		GFF4143	0.33	-0.8
4,169,140	-		GFF4143	0.35	-0.1
4,169,148	-		GFF4143	0.37	-0.1
4,169,177	+		GFF4143	0.44	-0.9
4,169,199	-		GFF4143	0.49	+0.9
4,169,201	-		GFF4143	0.50	-0.6
4,169,205	-		GFF4143	0.51	-1.1
4,169,205	-		GFF4143	0.51	-0.3
4,169,205	-		GFF4143	0.51	-0.0
4,169,206	+		GFF4143	0.51	-0.5
4,169,235	+		GFF4143	0.58	+0.2
4,169,240	+		GFF4143	0.59	+0.3
4,169,243	-		GFF4143	0.60	+0.9
4,169,243	-		GFF4143	0.60	-1.3
4,169,243	-		GFF4143	0.60	-0.5
4,169,245	+		GFF4143	0.60	+0.4
4,169,245	+		GFF4143	0.60	+0.8
4,169,245	+		GFF4143	0.60	-1.5
4,169,248	-		GFF4143	0.61	-1.5
4,169,273	-		GFF4143	0.67	-0.8
4,169,273	-		GFF4143	0.67	-0.1
4,169,285	-		GFF4143	0.70	+0.4
4,169,307	+		GFF4143	0.76	-1.1
4,169,307	-		GFF4143	0.76	-0.7
4,169,328	+		GFF4143	0.81	-0.3
4,169,336	-		GFF4143	0.83	+1.7
4,169,338	+		GFF4143	0.83	+0.7
4,169,345	+		GFF4143	0.85	-0.2
4,169,346	-		GFF4143	0.85	+1.0
4,169,353	-		GFF4143	0.87	+0.1
4,169,355	+		GFF4143	0.88	-0.2
4,169,358	-		GFF4143	0.88	+0.1
4,169,358	-		GFF4143	0.88	-0.5
4,169,363	-		GFF4143	0.90	+0.2
4,169,363	-		GFF4143	0.90	-0.0
4,169,372	+				-0.3
4,169,379	+				-0.3
4,169,379	+				-0.9
4,169,382	-				-1.9
4,169,389	+				+0.2
4,169,389	+				-0.6
4,169,397	-				+0.6
4,169,397	-				-0.4
4,169,397	-				+0.7
4,169,423	+				+0.5
4,169,431	-				-2.8
4,169,432	+				-0.3
4,169,440	-				-0.3