Strain Fitness in Sphingobium sp. HT1-2 around GFF4141

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,165,500	-				+0.1
4,165,549	-				-0.5
4,165,549	-				+0.1
4,165,591	+				-0.5
4,165,598	+				-0.5
4,165,615	+				+0.9
4,165,634	+				-0.6
4,165,661	+				-0.3
4,165,661	+				+1.0
4,165,661	+				+0.8
4,165,661	+				+0.7
4,165,669	-				+0.2
4,165,669	-				-1.8
4,165,669	-				+1.0
4,165,669	-				-1.1
4,165,669	-				-1.8
4,165,691	-				-1.5
4,165,785	-				-0.3
4,165,794	+				+0.9
4,165,804	+				-1.1
4,165,804	+				-0.3
4,165,804	+				-0.8
4,165,804	+				-0.9
4,165,804	+				+0.2
4,165,809	+				+0.5
4,165,809	+				-0.7
4,165,809	+				+0.1
4,165,810	-				+0.7
4,165,812	-				-0.6
4,165,812	-				-0.4
4,165,812	-				+1.2
4,165,812	-				-0.1
4,165,812	-				-0.5
4,165,812	-				-0.3
4,165,812	-				-0.4
4,165,812	-				-1.3
4,165,812	-				-0.4
4,165,812	-				+0.1
4,165,817	-				-0.4
4,165,817	-				-0.1
4,165,817	-				-2.5
4,165,817	-				-0.6
4,165,817	-				-2.1
4,165,831	+				-0.1
4,165,836	+				-0.6
4,165,837	+				-0.9
4,165,837	+				+0.6
4,165,844	+		GFF4141	0.11	-1.9
4,165,862	-		GFF4141	0.13	-0.5
4,165,867	-		GFF4141	0.13	+0.4
4,165,898	-		GFF4141	0.16	-2.6
4,165,912	+		GFF4141	0.18	-1.0
4,165,920	-		GFF4141	0.19	-0.6
4,165,926	+		GFF4141	0.19	-2.3
4,165,927	+		GFF4141	0.19	+0.4
4,165,935	-		GFF4141	0.20	-1.1
4,165,936	+		GFF4141	0.20	-1.8
4,165,944	+		GFF4141	0.21	-0.7
4,165,951	+		GFF4141	0.22	+0.1
4,165,952	-		GFF4141	0.22	-0.8
4,165,958	+		GFF4141	0.22	-1.3
4,165,959	-		GFF4141	0.23	-0.6
4,165,959	-		GFF4141	0.23	-1.0
4,165,966	-		GFF4141	0.23	+0.4
4,165,966	-		GFF4141	0.23	+0.4
4,165,966	-		GFF4141	0.23	+0.2
4,165,981	+		GFF4141	0.25	-0.1
4,166,010	+		GFF4141	0.28	-0.3
4,166,011	-		GFF4141	0.28	+0.9
4,166,011	-		GFF4141	0.28	+0.0
4,166,027	-		GFF4141	0.30	-0.5
4,166,035	+		GFF4141	0.30	-2.0
4,166,042	-		GFF4141	0.31	+1.1
4,166,047	+		GFF4141	0.32	-1.7
4,166,047	+		GFF4141	0.32	+1.0
4,166,080	+		GFF4141	0.35	+1.3
4,166,090	-		GFF4141	0.36	+0.6
4,166,090	-		GFF4141	0.36	-1.1
4,166,090	-		GFF4141	0.36	-1.9
4,166,095	-		GFF4141	0.37	-1.0
4,166,101	+		GFF4141	0.37	-0.4
4,166,109	-		GFF4141	0.38	-0.4
4,166,116	+		GFF4141	0.39	+1.1
4,166,123	-		GFF4141	0.40	-0.1
4,166,124	-		GFF4141	0.40	+0.2
4,166,134	-		GFF4141	0.41	+0.4
4,166,134	-		GFF4141	0.41	-0.5
4,166,134	-		GFF4141	0.41	-0.4
4,166,134	-		GFF4141	0.41	-0.5
4,166,134	-		GFF4141	0.41	+0.7
4,166,136	+		GFF4141	0.41	-0.6
4,166,148	-		GFF4141	0.42	-0.2
4,166,216	+		GFF4141	0.49	-1.7
4,166,231	+		GFF4141	0.51	-1.0
4,166,239	-		GFF4141	0.52	-1.1
4,166,270	-		GFF4141	0.55	+0.0
4,166,272	-		GFF4141	0.55	-0.5
4,166,274	+		GFF4141	0.55	-1.1
4,166,281	-		GFF4141	0.56	+0.1
4,166,310	+		GFF4141	0.59	+1.4
4,166,311	+		GFF4141	0.59	-0.2
4,166,318	-		GFF4141	0.60	-0.2
4,166,318	-		GFF4141	0.60	-1.0
4,166,328	-		GFF4141	0.61	-1.6
4,166,362	-		GFF4141	0.64	-1.0
4,166,362	-		GFF4141	0.64	+1.2
4,166,367	+		GFF4141	0.65	-0.4
4,166,374	-		GFF4141	0.66	+1.3
4,166,393	+		GFF4141	0.67	-0.5
4,166,393	+		GFF4141	0.67	+0.7
4,166,393	+		GFF4141	0.67	+0.4
4,166,393	+		GFF4141	0.67	-0.4
4,166,393	+		GFF4141	0.67	-0.5
4,166,393	+		GFF4141	0.67	+0.0
4,166,393	+		GFF4141	0.67	-0.9
4,166,401	+		GFF4141	0.68	-0.5
4,166,401	-		GFF4141	0.68	-0.6
4,166,403	+		GFF4141	0.69	-0.3
4,166,413	+		GFF4141	0.70	-0.9
4,166,413	+		GFF4141	0.70	+0.2
4,166,413	+		GFF4141	0.70	+1.2
4,166,413	+		GFF4141	0.70	-0.1
4,166,413	+		GFF4141	0.70	-1.1
4,166,421	-		GFF4141	0.70	-2.1
4,166,421	-		GFF4141	0.70	-1.9
4,166,421	-		GFF4141	0.70	-1.8
4,166,421	-		GFF4141	0.70	+1.7
4,166,440	-		GFF4141	0.72	-0.3
4,166,442	+		GFF4141	0.73	-0.3
4,166,450	-		GFF4141	0.73	-2.6
4,166,460	+		GFF4141	0.74	-0.1
4,166,483	+		GFF4141	0.77	-0.2
4,166,483	+		GFF4141	0.77	+0.1
4,166,484	+		GFF4141	0.77	+1.2
4,166,487	-		GFF4141	0.77	+0.4
4,166,500	+		GFF4141	0.79	-0.9
4,166,520	+		GFF4141	0.81	-0.8
4,166,528	-		GFF4141	0.81	-0.3
4,166,528	-		GFF4141	0.81	-0.3
4,166,544	-		GFF4141	0.83	+0.9
4,166,545	-		GFF4141	0.83	-0.6
4,166,565	+		GFF4141	0.85	-0.4
4,166,571	-		GFF4141	0.86	-3.2
4,166,592	+		GFF4141	0.88	+0.4
4,166,612	+				-0.8
4,166,622	+				+0.2
4,166,622	+				-1.3
4,166,622	+				-1.6
4,166,629	-				-1.0
4,166,635	-				+0.4
4,166,643	+				-1.5
4,166,643	+				-0.0
4,166,656	-				+0.9
4,166,681	+				-0.2
4,166,692	+				+0.7
4,166,693	+				+0.5
4,166,707	+				+1.2
4,166,713	+				-0.6
4,166,713	+				+0.6
4,166,713	+				-2.6
4,166,713	+				-0.9
4,166,713	+				+0.3
4,166,714	+				+0.5
4,166,721	-				-0.1
4,166,721	-				-0.3
4,166,721	-				+0.6
4,166,721	-				+1.0
4,166,727	-				-1.0
4,166,757	+				-0.2
4,166,765	+				-1.2
4,166,770	+				-0.2
4,166,773	-				-0.3
4,166,778	-				-1.7
4,166,778	-				-1.5
4,166,778	-				+0.4
4,166,796	+				+0.6
4,166,833	+				+0.6
4,166,836	-				-0.3
4,166,841	-				-0.3
4,166,864	-				-0.7
4,166,880	+				-1.5
4,166,885	-				-0.8
4,166,927	+		GFF4142	0.10	+0.6
4,166,933	-		GFF4142	0.10	-1.1
4,166,948	+		GFF4142	0.11	-1.2
4,166,950	+		GFF4142	0.11	-0.4
4,166,970	+		GFF4142	0.12	-0.6
4,166,981	+		GFF4142	0.13	-0.2
4,166,981	+		GFF4142	0.13	-0.8
4,166,991	+		GFF4142	0.13	-1.7
4,166,991	+		GFF4142	0.13	+1.1
4,166,991	+		GFF4142	0.13	-0.3
4,166,998	-		GFF4142	0.13	-0.6
4,166,999	-		GFF4142	0.14	+0.5
4,166,999	-		GFF4142	0.14	-0.1
4,166,999	-		GFF4142	0.14	+0.2
4,167,002	+		GFF4142	0.14	-1.3
4,167,010	-		GFF4142	0.14	-0.7
4,167,010	-		GFF4142	0.14	+0.1
4,167,010	-		GFF4142	0.14	+0.7
4,167,053	+		GFF4142	0.16	-0.8
4,167,058	+		GFF4142	0.16	+0.6
4,167,066	-		GFF4142	0.17	+0.5
4,167,066	-		GFF4142	0.17	-0.9
4,167,106	-		GFF4142	0.19	-0.8
4,167,106	-		GFF4142	0.19	-1.5
4,167,127	-		GFF4142	0.20	+0.9
4,167,193	-		GFF4142	0.23	-1.5
4,167,219	+		GFF4142	0.24	-0.2
4,167,222	-		GFF4142	0.24	+0.4
4,167,233	+		GFF4142	0.25	-0.5
4,167,242	-		GFF4142	0.25	+0.8
4,167,251	+		GFF4142	0.26	+0.9
4,167,255	+		GFF4142	0.26	+0.4
4,167,259	-		GFF4142	0.26	+0.1
4,167,261	+		GFF4142	0.26	-0.0
4,167,269	-		GFF4142	0.26	-0.1
4,167,269	-		GFF4142	0.26	+0.2
4,167,274	-		GFF4142	0.27	+1.3
4,167,275	+		GFF4142	0.27	+0.8
4,167,288	-		GFF4142	0.27	+0.9
4,167,289	-		GFF4142	0.27	-1.8
4,167,307	+		GFF4142	0.28	-0.3
4,167,308	+		GFF4142	0.28	-2.1
4,167,316	-		GFF4142	0.29	-0.5
4,167,321	-		GFF4142	0.29	+0.4
4,167,347	+		GFF4142	0.30	-1.2
4,167,355	-		GFF4142	0.31	-1.6
4,167,358	+		GFF4142	0.31	-1.2
4,167,364	+		GFF4142	0.31	+0.2
4,167,366	-		GFF4142	0.31	-1.8
4,167,373	-		GFF4142	0.31	-0.9
4,167,374	-		GFF4142	0.31	+0.1
4,167,379	+		GFF4142	0.32	-0.5
4,167,387	-		GFF4142	0.32	+0.3
4,167,409	+		GFF4142	0.33	-1.6
4,167,415	+		GFF4142	0.33	+0.2
4,167,443	+		GFF4142	0.35	-2.1
4,167,445	+		GFF4142	0.35	+0.4
4,167,445	+		GFF4142	0.35	+0.2
4,167,445	+		GFF4142	0.35	-1.7
4,167,445	+		GFF4142	0.35	-0.3
4,167,453	-		GFF4142	0.35	+0.0
4,167,453	-		GFF4142	0.35	-1.0
4,167,453	-		GFF4142	0.35	-0.4
4,167,455	+		GFF4142	0.35	+0.9
4,167,455	+		GFF4142	0.35	+0.4
4,167,455	+		GFF4142	0.35	+0.5
4,167,461	-		GFF4142	0.36	-0.0
4,167,467	+		GFF4142	0.36	-0.0
4,167,472	+		GFF4142	0.36	+0.0
4,167,475	-		GFF4142	0.36	+0.6
4,167,475	-		GFF4142	0.36	-0.2
4,167,477	+		GFF4142	0.36	-1.3
4,167,536	-		GFF4142	0.39	-2.5
4,167,552	-		GFF4142	0.40	-1.2
4,167,568	+		GFF4142	0.41	-0.4
4,167,568	+		GFF4142	0.41	-0.1
4,167,568	+		GFF4142	0.41	+0.2
4,167,576	-		GFF4142	0.41	-0.4
4,167,576	-		GFF4142	0.41	+1.1
4,167,614	-		GFF4142	0.43	+1.4
4,167,627	-		GFF4142	0.44	+0.9
4,167,648	+		GFF4142	0.45	-0.7
4,167,668	-		GFF4142	0.45	-0.3
4,167,679	-		GFF4142	0.46	+0.1
4,167,691	-		GFF4142	0.47	-0.4
4,167,693	+		GFF4142	0.47	-0.6