Strain Fitness in Sphingobium sp. HT1-2 around GFF4139

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4138 and GFF4139 are separated by 39 nucleotidesGFF4139 and GFF4140 are separated by 116 nucleotides GFF4138 - hypothetical protein, at 4,162,308 to 4,163,330 GFF4138 GFF4139 - Putative transmembrane protein, at 4,163,370 to 4,164,089 GFF4139 GFF4140 - Transcription termination factor Rho, at 4,164,206 to 4,165,462 GFF4140 Position (kb) 4163 4164 4165Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4162.407 kb on - strandat 4162.438 kb on + strand, within GFF4138at 4162.439 kb on + strand, within GFF4138at 4162.452 kb on + strand, within GFF4138at 4162.462 kb on - strand, within GFF4138at 4162.550 kb on - strand, within GFF4138at 4162.550 kb on - strand, within GFF4138at 4162.570 kb on + strand, within GFF4138at 4162.570 kb on + strand, within GFF4138at 4162.570 kb on + strand, within GFF4138at 4162.570 kb on + strand, within GFF4138at 4162.570 kb on + strand, within GFF4138at 4162.575 kb on + strand, within GFF4138at 4162.578 kb on - strand, within GFF4138at 4162.589 kb on + strand, within GFF4138at 4162.589 kb on + strand, within GFF4138at 4162.590 kb on + strand, within GFF4138at 4162.597 kb on - strand, within GFF4138at 4162.597 kb on - strand, within GFF4138at 4162.603 kb on + strand, within GFF4138at 4162.604 kb on + strand, within GFF4138at 4162.608 kb on + strand, within GFF4138at 4162.611 kb on - strand, within GFF4138at 4162.620 kb on + strand, within GFF4138at 4162.623 kb on + strand, within GFF4138at 4162.628 kb on + strand, within GFF4138at 4162.628 kb on + strand, within GFF4138at 4162.628 kb on + strand, within GFF4138at 4162.628 kb on + strand, within GFF4138at 4162.630 kb on + strand, within GFF4138at 4162.630 kb on + strand, within GFF4138at 4162.630 kb on - strand, within GFF4138at 4162.631 kb on - strand, within GFF4138at 4162.636 kb on - strand, within GFF4138at 4162.636 kb on - strand, within GFF4138at 4162.658 kb on + strand, within GFF4138at 4162.658 kb on + strand, within GFF4138at 4162.658 kb on + strand, within GFF4138at 4162.658 kb on + strand, within GFF4138at 4162.658 kb on + strand, within GFF4138at 4162.663 kb on + strand, within GFF4138at 4162.666 kb on - strand, within GFF4138at 4162.666 kb on - strand, within GFF4138at 4162.666 kb on - strand, within GFF4138at 4162.666 kb on - strand, within GFF4138at 4162.666 kb on - strand, within GFF4138at 4162.671 kb on - strand, within GFF4138at 4162.694 kb on - strand, within GFF4138at 4162.720 kb on - strand, within GFF4138at 4162.745 kb on + strand, within GFF4138at 4162.751 kb on - strand, within GFF4138at 4162.758 kb on - strand, within GFF4138at 4162.765 kb on + strand, within GFF4138at 4162.765 kb on + strand, within GFF4138at 4162.771 kb on - strand, within GFF4138at 4162.777 kb on - strand, within GFF4138at 4162.780 kb on + strand, within GFF4138at 4162.780 kb on + strand, within GFF4138at 4162.791 kb on + strand, within GFF4138at 4162.837 kb on - strand, within GFF4138at 4162.838 kb on + strand, within GFF4138at 4162.838 kb on + strand, within GFF4138at 4162.838 kb on + strand, within GFF4138at 4162.857 kb on + strand, within GFF4138at 4162.865 kb on - strand, within GFF4138at 4162.884 kb on + strand, within GFF4138at 4162.891 kb on - strand, within GFF4138at 4162.897 kb on - strand, within GFF4138at 4162.904 kb on - strand, within GFF4138at 4162.904 kb on - strand, within GFF4138at 4162.904 kb on - strand, within GFF4138at 4162.904 kb on - strand, within GFF4138at 4162.920 kb on + strand, within GFF4138at 4162.930 kb on + strand, within GFF4138at 4162.931 kb on - strand, within GFF4138at 4162.948 kb on + strand, within GFF4138at 4162.958 kb on + strand, within GFF4138at 4162.961 kb on + strand, within GFF4138at 4162.961 kb on - strand, within GFF4138at 4162.963 kb on + strand, within GFF4138at 4162.963 kb on + strand, within GFF4138at 4162.963 kb on + strand, within GFF4138at 4162.963 kb on + strand, within GFF4138at 4162.963 kb on + strand, within GFF4138at 4162.963 kb on + strand, within GFF4138at 4162.963 kb on + strand, within GFF4138at 4162.971 kb on - strand, within GFF4138at 4162.971 kb on - strand, within GFF4138at 4163.028 kb on + strand, within GFF4138at 4163.031 kb on - strand, within GFF4138at 4163.038 kb on + strand, within GFF4138at 4163.038 kb on + strand, within GFF4138at 4163.038 kb on + strand, within GFF4138at 4163.038 kb on + strand, within GFF4138at 4163.038 kb on + strand, within GFF4138at 4163.038 kb on + strand, within GFF4138at 4163.038 kb on + strand, within GFF4138at 4163.038 kb on + strand, within GFF4138at 4163.038 kb on + strand, within GFF4138at 4163.038 kb on + strand, within GFF4138at 4163.046 kb on - strand, within GFF4138at 4163.046 kb on - strand, within GFF4138at 4163.046 kb on - strand, within GFF4138at 4163.046 kb on - strand, within GFF4138at 4163.046 kb on - strand, within GFF4138at 4163.046 kb on - strand, within GFF4138at 4163.046 kb on - strand, within GFF4138at 4163.046 kb on - strand, within GFF4138at 4163.046 kb on - strand, within GFF4138at 4163.046 kb on - strand, within GFF4138at 4163.046 kb on - strand, within GFF4138at 4163.046 kb on - strand, within GFF4138at 4163.046 kb on - strand, within GFF4138at 4163.048 kb on + strand, within GFF4138at 4163.051 kb on - strand, within GFF4138at 4163.082 kb on + strand, within GFF4138at 4163.130 kb on + strand, within GFF4138at 4163.144 kb on - strand, within GFF4138at 4163.147 kb on + strand, within GFF4138at 4163.162 kb on - strand, within GFF4138at 4163.162 kb on - strand, within GFF4138at 4163.171 kb on + strand, within GFF4138at 4163.171 kb on + strand, within GFF4138at 4163.179 kb on - strand, within GFF4138at 4163.179 kb on - strand, within GFF4138at 4163.188 kb on + strand, within GFF4138at 4163.192 kb on + strand, within GFF4138at 4163.197 kb on + strand, within GFF4138at 4163.200 kb on - strand, within GFF4138at 4163.205 kb on + strand, within GFF4138at 4163.205 kb on - strand, within GFF4138at 4163.205 kb on - strand, within GFF4138at 4163.206 kb on + strand, within GFF4138at 4163.211 kb on + strand, within GFF4138at 4163.214 kb on - strand, within GFF4138at 4163.214 kb on - strand, within GFF4138at 4163.232 kb on - strandat 4163.241 kb on + strandat 4163.246 kb on + strandat 4163.246 kb on + strandat 4163.256 kb on - strandat 4163.256 kb on - strandat 4163.258 kb on + strandat 4163.261 kb on - strandat 4163.271 kb on - strandat 4163.304 kb on + strandat 4163.312 kb on - strandat 4163.317 kb on - strandat 4163.319 kb on + strandat 4163.324 kb on + strandat 4163.327 kb on - strandat 4163.327 kb on - strandat 4163.340 kb on + strandat 4163.344 kb on - strandat 4163.354 kb on + strandat 4163.354 kb on + strandat 4163.354 kb on + strandat 4163.354 kb on + strandat 4163.354 kb on + strandat 4163.362 kb on - strandat 4163.410 kb on - strandat 4163.412 kb on + strandat 4163.453 kb on + strand, within GFF4139at 4163.453 kb on + strand, within GFF4139at 4163.453 kb on + strand, within GFF4139at 4163.453 kb on + strand, within GFF4139at 4163.461 kb on - strand, within GFF4139at 4163.461 kb on - strand, within GFF4139at 4163.461 kb on - strand, within GFF4139at 4163.461 kb on - strand, within GFF4139at 4163.461 kb on - strand, within GFF4139at 4163.461 kb on - strand, within GFF4139at 4163.530 kb on + strand, within GFF4139at 4163.534 kb on + strand, within GFF4139at 4163.538 kb on - strand, within GFF4139at 4163.542 kb on - strand, within GFF4139at 4163.547 kb on + strand, within GFF4139at 4163.556 kb on + strand, within GFF4139at 4163.575 kb on + strand, within GFF4139at 4163.583 kb on - strand, within GFF4139at 4163.583 kb on - strand, within GFF4139at 4163.583 kb on - strand, within GFF4139at 4163.589 kb on - strand, within GFF4139at 4163.593 kb on + strand, within GFF4139at 4163.598 kb on + strand, within GFF4139at 4163.598 kb on + strand, within GFF4139at 4163.598 kb on + strand, within GFF4139at 4163.603 kb on + strand, within GFF4139at 4163.606 kb on - strand, within GFF4139at 4163.606 kb on - strand, within GFF4139at 4163.606 kb on - strand, within GFF4139at 4163.606 kb on - strand, within GFF4139at 4163.652 kb on + strand, within GFF4139at 4163.652 kb on + strand, within GFF4139at 4163.652 kb on + strand, within GFF4139at 4163.660 kb on - strand, within GFF4139at 4163.671 kb on + strand, within GFF4139at 4163.686 kb on - strand, within GFF4139at 4163.696 kb on + strand, within GFF4139at 4163.741 kb on + strand, within GFF4139at 4163.741 kb on + strand, within GFF4139at 4163.742 kb on - strand, within GFF4139at 4163.760 kb on - strand, within GFF4139at 4163.760 kb on - strand, within GFF4139at 4163.765 kb on - strand, within GFF4139at 4163.770 kb on - strand, within GFF4139at 4163.784 kb on - strand, within GFF4139at 4163.788 kb on - strand, within GFF4139at 4163.827 kb on - strand, within GFF4139at 4163.827 kb on - strand, within GFF4139at 4163.827 kb on - strand, within GFF4139at 4163.882 kb on + strand, within GFF4139at 4163.890 kb on - strand, within GFF4139at 4163.923 kb on + strand, within GFF4139at 4163.960 kb on - strand, within GFF4139at 4163.963 kb on + strand, within GFF4139at 4164.020 kb on + strandat 4164.056 kb on - strandat 4164.056 kb on - strandat 4164.074 kb on + strandat 4164.088 kb on - strandat 4164.092 kb on - strandat 4164.095 kb on - strandat 4164.100 kb on + strandat 4164.132 kb on + strandat 4164.139 kb on - strandat 4164.141 kb on - strandat 4164.142 kb on + strandat 4164.143 kb on + strandat 4164.151 kb on - strandat 4164.151 kb on - strandat 4164.151 kb on - strandat 4164.151 kb on - strandat 4164.155 kb on + strandat 4164.162 kb on + strandat 4164.170 kb on - strandat 4164.170 kb on - strandat 4164.170 kb on - strandat 4164.178 kb on + strandat 4164.178 kb on + strandat 4164.183 kb on + strandat 4164.191 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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4,162,407 - +0.2
4,162,438 + GFF4138 0.13 -0.6
4,162,439 + GFF4138 0.13 -1.3
4,162,452 + GFF4138 0.14 -1.9
4,162,462 - GFF4138 0.15 -1.8
4,162,550 - GFF4138 0.24 -1.0
4,162,550 - GFF4138 0.24 -1.7
4,162,570 + GFF4138 0.26 -0.4
4,162,570 + GFF4138 0.26 +0.2
4,162,570 + GFF4138 0.26 -0.7
4,162,570 + GFF4138 0.26 +0.9
4,162,570 + GFF4138 0.26 -0.7
4,162,575 + GFF4138 0.26 -1.3
4,162,578 - GFF4138 0.26 +0.7
4,162,589 + GFF4138 0.27 +1.3
4,162,589 + GFF4138 0.27 -0.1
4,162,590 + GFF4138 0.28 -0.8
4,162,597 - GFF4138 0.28 +0.4
4,162,597 - GFF4138 0.28 -1.3
4,162,603 + GFF4138 0.29 +0.1
4,162,604 + GFF4138 0.29 -1.1
4,162,608 + GFF4138 0.29 -0.8
4,162,611 - GFF4138 0.30 -1.6
4,162,620 + GFF4138 0.30 -0.5
4,162,623 + GFF4138 0.31 +0.0
4,162,628 + GFF4138 0.31 -0.3
4,162,628 + GFF4138 0.31 +0.1
4,162,628 + GFF4138 0.31 +0.6
4,162,628 + GFF4138 0.31 -0.3
4,162,630 + GFF4138 0.31 -0.3
4,162,630 + GFF4138 0.31 -1.8
4,162,630 - GFF4138 0.31 -1.7
4,162,631 - GFF4138 0.32 +0.5
4,162,636 - GFF4138 0.32 +1.5
4,162,636 - GFF4138 0.32 -0.1
4,162,658 + GFF4138 0.34 +0.1
4,162,658 + GFF4138 0.34 -0.7
4,162,658 + GFF4138 0.34 +1.8
4,162,658 + GFF4138 0.34 -0.3
4,162,658 + GFF4138 0.34 +0.7
4,162,663 + GFF4138 0.35 -0.7
4,162,666 - GFF4138 0.35 +0.5
4,162,666 - GFF4138 0.35 +0.1
4,162,666 - GFF4138 0.35 -0.2
4,162,666 - GFF4138 0.35 -0.1
4,162,666 - GFF4138 0.35 -1.5
4,162,671 - GFF4138 0.35 +0.3
4,162,694 - GFF4138 0.38 -0.7
4,162,720 - GFF4138 0.40 +0.9
4,162,745 + GFF4138 0.43 +0.7
4,162,751 - GFF4138 0.43 +0.5
4,162,758 - GFF4138 0.44 +0.1
4,162,765 + GFF4138 0.45 -0.4
4,162,765 + GFF4138 0.45 -0.1
4,162,771 - GFF4138 0.45 +0.4
4,162,777 - GFF4138 0.46 -0.6
4,162,780 + GFF4138 0.46 +0.9
4,162,780 + GFF4138 0.46 -0.7
4,162,791 + GFF4138 0.47 -0.9
4,162,837 - GFF4138 0.52 +0.1
4,162,838 + GFF4138 0.52 -1.0
4,162,838 + GFF4138 0.52 -1.3
4,162,838 + GFF4138 0.52 -0.3
4,162,857 + GFF4138 0.54 +0.5
4,162,865 - GFF4138 0.54 +2.0
4,162,884 + GFF4138 0.56 -0.8
4,162,891 - GFF4138 0.57 -1.7
4,162,897 - GFF4138 0.58 -0.6
4,162,904 - GFF4138 0.58 +0.8
4,162,904 - GFF4138 0.58 -0.3
4,162,904 - GFF4138 0.58 +0.4
4,162,904 - GFF4138 0.58 +0.3
4,162,920 + GFF4138 0.60 +0.0
4,162,930 + GFF4138 0.61 -0.9
4,162,931 - GFF4138 0.61 +0.5
4,162,948 + GFF4138 0.63 +0.8
4,162,958 + GFF4138 0.64 +0.2
4,162,961 + GFF4138 0.64 +0.1
4,162,961 - GFF4138 0.64 -0.3
4,162,963 + GFF4138 0.64 +0.4
4,162,963 + GFF4138 0.64 +0.4
4,162,963 + GFF4138 0.64 -0.9
4,162,963 + GFF4138 0.64 -0.0
4,162,963 + GFF4138 0.64 -1.5
4,162,963 + GFF4138 0.64 +0.4
4,162,963 + GFF4138 0.64 -0.7
4,162,971 - GFF4138 0.65 -0.6
4,162,971 - GFF4138 0.65 -0.5
4,163,028 + GFF4138 0.70 +0.5
4,163,031 - GFF4138 0.71 -0.6
4,163,038 + GFF4138 0.71 -1.0
4,163,038 + GFF4138 0.71 -2.0
4,163,038 + GFF4138 0.71 -0.3
4,163,038 + GFF4138 0.71 -1.0
4,163,038 + GFF4138 0.71 +0.5
4,163,038 + GFF4138 0.71 -0.3
4,163,038 + GFF4138 0.71 +0.9
4,163,038 + GFF4138 0.71 +0.0
4,163,038 + GFF4138 0.71 -0.6
4,163,038 + GFF4138 0.71 -0.3
4,163,046 - GFF4138 0.72 -0.4
4,163,046 - GFF4138 0.72 -0.2
4,163,046 - GFF4138 0.72 -0.3
4,163,046 - GFF4138 0.72 +0.1
4,163,046 - GFF4138 0.72 +0.9
4,163,046 - GFF4138 0.72 +1.4
4,163,046 - GFF4138 0.72 -0.3
4,163,046 - GFF4138 0.72 +0.4
4,163,046 - GFF4138 0.72 +0.0
4,163,046 - GFF4138 0.72 +1.5
4,163,046 - GFF4138 0.72 +0.2
4,163,046 - GFF4138 0.72 -1.8
4,163,046 - GFF4138 0.72 -0.8
4,163,048 + GFF4138 0.72 -0.4
4,163,051 - GFF4138 0.73 -0.5
4,163,082 + GFF4138 0.76 -0.2
4,163,130 + GFF4138 0.80 -0.2
4,163,144 - GFF4138 0.82 -1.2
4,163,147 + GFF4138 0.82 -0.6
4,163,162 - GFF4138 0.83 -1.3
4,163,162 - GFF4138 0.83 -1.3
4,163,171 + GFF4138 0.84 -1.5
4,163,171 + GFF4138 0.84 +0.1
4,163,179 - GFF4138 0.85 -0.8
4,163,179 - GFF4138 0.85 +0.4
4,163,188 + GFF4138 0.86 -1.4
4,163,192 + GFF4138 0.86 -1.7
4,163,197 + GFF4138 0.87 -0.9
4,163,200 - GFF4138 0.87 -0.1
4,163,205 + GFF4138 0.88 +1.1
4,163,205 - GFF4138 0.88 -0.7
4,163,205 - GFF4138 0.88 +0.3
4,163,206 + GFF4138 0.88 +0.4
4,163,211 + GFF4138 0.88 +0.3
4,163,214 - GFF4138 0.89 -2.6
4,163,214 - GFF4138 0.89 -0.4
4,163,232 - -1.7
4,163,241 + -0.3
4,163,246 + +0.1
4,163,246 + -0.5
4,163,256 - -0.3
4,163,256 - -0.9
4,163,258 + -0.5
4,163,261 - -1.3
4,163,271 - -0.2
4,163,304 + +0.5
4,163,312 - -1.3
4,163,317 - -1.5
4,163,319 + -0.8
4,163,324 + -0.5
4,163,327 - +1.1
4,163,327 - -1.4
4,163,340 + +0.7
4,163,344 - -0.3
4,163,354 + -1.2
4,163,354 + -0.9
4,163,354 + +1.4
4,163,354 + +0.5
4,163,354 + +0.2
4,163,362 - -1.3
4,163,410 - +0.8
4,163,412 + +0.6
4,163,453 + GFF4139 0.12 -2.6
4,163,453 + GFF4139 0.12 -0.9
4,163,453 + GFF4139 0.12 -1.1
4,163,453 + GFF4139 0.12 +1.0
4,163,461 - GFF4139 0.13 +0.4
4,163,461 - GFF4139 0.13 -0.5
4,163,461 - GFF4139 0.13 -1.2
4,163,461 - GFF4139 0.13 +1.3
4,163,461 - GFF4139 0.13 -1.6
4,163,461 - GFF4139 0.13 -0.3
4,163,530 + GFF4139 0.22 +0.9
4,163,534 + GFF4139 0.23 -2.3
4,163,538 - GFF4139 0.23 +0.5
4,163,542 - GFF4139 0.24 -0.0
4,163,547 + GFF4139 0.25 -1.2
4,163,556 + GFF4139 0.26 -0.1
4,163,575 + GFF4139 0.28 -0.9
4,163,583 - GFF4139 0.30 -0.2
4,163,583 - GFF4139 0.30 +0.8
4,163,583 - GFF4139 0.30 +0.1
4,163,589 - GFF4139 0.30 +1.2
4,163,593 + GFF4139 0.31 +0.1
4,163,598 + GFF4139 0.32 -3.1
4,163,598 + GFF4139 0.32 +0.7
4,163,598 + GFF4139 0.32 +0.6
4,163,603 + GFF4139 0.32 -0.3
4,163,606 - GFF4139 0.33 -1.7
4,163,606 - GFF4139 0.33 -1.3
4,163,606 - GFF4139 0.33 +0.5
4,163,606 - GFF4139 0.33 -0.5
4,163,652 + GFF4139 0.39 +1.1
4,163,652 + GFF4139 0.39 +0.2
4,163,652 + GFF4139 0.39 -0.3
4,163,660 - GFF4139 0.40 +0.0
4,163,671 + GFF4139 0.42 -1.6
4,163,686 - GFF4139 0.44 +0.8
4,163,696 + GFF4139 0.45 -1.2
4,163,741 + GFF4139 0.52 +0.1
4,163,741 + GFF4139 0.52 -0.2
4,163,742 - GFF4139 0.52 -1.1
4,163,760 - GFF4139 0.54 -1.3
4,163,760 - GFF4139 0.54 -0.2
4,163,765 - GFF4139 0.55 -0.4
4,163,770 - GFF4139 0.56 +1.3
4,163,784 - GFF4139 0.57 +0.8
4,163,788 - GFF4139 0.58 +1.0
4,163,827 - GFF4139 0.63 +0.1
4,163,827 - GFF4139 0.63 +0.1
4,163,827 - GFF4139 0.63 -1.5
4,163,882 + GFF4139 0.71 -0.6
4,163,890 - GFF4139 0.72 -0.7
4,163,923 + GFF4139 0.77 +0.1
4,163,960 - GFF4139 0.82 +0.0
4,163,963 + GFF4139 0.82 +0.3
4,164,020 + +0.3
4,164,056 - -0.7
4,164,056 - +0.1
4,164,074 + -0.5
4,164,088 - +0.7
4,164,092 - -0.1
4,164,095 - -0.5
4,164,100 + -1.3
4,164,132 + -0.2
4,164,139 - +0.1
4,164,141 - -0.1
4,164,142 + -1.5
4,164,143 + -0.7
4,164,151 - -0.4
4,164,151 - +0.2
4,164,151 - -1.1
4,164,151 - +0.0
4,164,155 + +1.0
4,164,162 + +0.4
4,164,170 - -2.1
4,164,170 - -1.6
4,164,170 - +1.3
4,164,178 + +0.7
4,164,178 + -0.9
4,164,183 + +0.9
4,164,191 - -0.3

Or see this region's nucleotide sequence