Strain Fitness in Sphingobium sp. HT1-2 around GFF4127

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,150,169	+				-1.3
4,150,178	-				-0.3
4,150,200	+				-0.3
4,150,203	-				+0.7
4,150,205	+				+0.8
4,150,208	-				-0.6
4,150,208	-				+1.0
4,150,213	-				+0.0
4,150,251	+				-0.4
4,150,303	+		GFF4126	0.13	+1.1
4,150,311	-		GFF4126	0.14	-0.7
4,150,325	-		GFF4126	0.15	-1.2
4,150,325	-		GFF4126	0.15	+0.4
4,150,371	-		GFF4126	0.20	+0.4
4,150,382	+		GFF4126	0.21	-2.0
4,150,382	-		GFF4126	0.21	-0.9
4,150,391	+		GFF4126	0.22	-2.4
4,150,409	-		GFF4126	0.24	-0.4
4,150,411	-		GFF4126	0.24	+0.6
4,150,419	-		GFF4126	0.25	-0.9
4,150,444	-		GFF4126	0.28	-0.8
4,150,444	-		GFF4126	0.28	-1.2
4,150,449	+		GFF4126	0.28	-0.9
4,150,452	-		GFF4126	0.28	-1.4
4,150,457	+		GFF4126	0.29	+0.4
4,150,457	+		GFF4126	0.29	+0.2
4,150,457	+		GFF4126	0.29	+0.0
4,150,464	+		GFF4126	0.30	-0.3
4,150,470	+		GFF4126	0.30	-1.0
4,150,479	+		GFF4126	0.31	-0.4
4,150,480	+		GFF4126	0.31	-0.7
4,150,485	+		GFF4126	0.32	-1.7
4,150,485	+		GFF4126	0.32	+0.2
4,150,493	-		GFF4126	0.33	-0.7
4,150,509	+		GFF4126	0.34	-0.0
4,150,517	-		GFF4126	0.35	-0.2
4,150,517	-		GFF4126	0.35	-0.9
4,150,517	-		GFF4126	0.35	-0.8
4,150,524	+		GFF4126	0.36	+0.0
4,150,552	-		GFF4126	0.39	-0.7
4,150,562	-		GFF4126	0.40	-1.2
4,150,562	-		GFF4126	0.40	-2.2
4,150,562	-		GFF4126	0.40	+1.2
4,150,579	-		GFF4126	0.42	-0.5
4,150,603	-		GFF4126	0.44	-0.9
4,150,609	+		GFF4126	0.45	+0.1
4,150,622	-		GFF4126	0.46	-1.3
4,150,622	-		GFF4126	0.46	+0.3
4,150,626	+		GFF4126	0.46	-0.5
4,150,626	+		GFF4126	0.46	+0.1
4,150,628	+		GFF4126	0.47	-0.8
4,150,628	+		GFF4126	0.47	+1.0
4,150,634	-		GFF4126	0.47	-0.4
4,150,634	-		GFF4126	0.47	+1.0
4,150,634	-		GFF4126	0.47	-1.3
4,150,636	-		GFF4126	0.47	-1.3
4,150,636	-		GFF4126	0.47	-0.0
4,150,636	-		GFF4126	0.47	-1.0
4,150,641	-		GFF4126	0.48	+0.0
4,150,647	+		GFF4126	0.49	+1.1
4,150,647	+		GFF4126	0.49	+0.1
4,150,657	-		GFF4126	0.50	+0.1
4,150,666	-		GFF4126	0.51	-0.4
4,150,680	-		GFF4126	0.52	-1.4
4,150,691	+		GFF4126	0.53	-1.4
4,150,699	-		GFF4126	0.54	-0.0
4,150,725	+		GFF4126	0.57	-0.5
4,150,755	+		GFF4126	0.60	-1.7
4,150,790	-		GFF4126	0.63	-0.7
4,150,812	+		GFF4126	0.66	-1.8
4,150,812	+		GFF4126	0.66	-1.4
4,150,814	+		GFF4126	0.66	-1.3
4,150,815	-		GFF4126	0.66	+0.9
4,150,820	-		GFF4126	0.67	+0.6
4,150,836	+		GFF4126	0.68	-0.9
4,150,853	+		GFF4126	0.70	+0.1
4,150,860	+		GFF4126	0.71	-1.3
4,150,864	+		GFF4126	0.71	-0.3
4,150,864	+		GFF4126	0.71	+0.5
4,150,872	-		GFF4126	0.72	-1.8
4,150,872	-		GFF4126	0.72	-2.3
4,150,874	+		GFF4126	0.72	-0.4
4,150,882	-		GFF4126	0.73	+0.3
4,150,900	+		GFF4126	0.75	-0.1
4,150,908	-		GFF4126	0.76	-1.7
4,150,908	-		GFF4126	0.76	-2.0
4,150,910	+		GFF4126	0.76	+0.2
4,150,910	+		GFF4126	0.76	-1.0
4,150,910	+		GFF4126	0.76	+0.3
4,150,918	-		GFF4126	0.77	-1.2
4,150,918	-		GFF4126	0.77	-0.5
4,150,939	+		GFF4126	0.79	-1.8
4,150,939	+		GFF4126	0.79	+0.3
4,150,947	-		GFF4126	0.80	-1.6
4,150,947	-		GFF4126	0.80	-1.9
4,150,947	-		GFF4126	0.80	+0.3
4,150,948	+		GFF4126	0.80	-0.8
4,150,952	+		GFF4126	0.80	-1.7
4,150,952	+		GFF4126	0.80	-1.5
4,150,952	+		GFF4126	0.80	+0.1
4,150,960	-		GFF4126	0.81	-1.4
4,150,960	-		GFF4126	0.81	+0.7
4,151,006	-		GFF4126	0.86	+0.5
4,151,101	-				+1.4
4,151,105	-				-0.0
4,151,128	+				+0.1
4,151,176	-				-1.1
4,151,192	-				-0.2
4,151,212	+				-0.7
4,151,212	+				-2.0
4,151,220	-		GFF4127	0.10	-0.6
4,151,220	-		GFF4127	0.10	+0.8
4,151,220	-		GFF4127	0.10	-0.6
4,151,220	-		GFF4127	0.10	-0.3
4,151,222	+		GFF4127	0.11	-1.1
4,151,240	-		GFF4127	0.14	-1.0
4,151,262	-		GFF4127	0.17	-1.9
4,151,279	+		GFF4127	0.20	+1.4
4,151,279	+		GFF4127	0.20	-0.9
4,151,279	+		GFF4127	0.20	-0.2
4,151,279	+		GFF4127	0.20	+1.2
4,151,279	+		GFF4127	0.20	-0.8
4,151,279	+		GFF4127	0.20	-0.7
4,151,279	+		GFF4127	0.20	+0.4
4,151,279	+		GFF4127	0.20	-1.7
4,151,283	-		GFF4127	0.21	+0.7
4,151,287	-		GFF4127	0.21	-0.5
4,151,287	-		GFF4127	0.21	-0.3
4,151,296	+		GFF4127	0.23	-1.2
4,151,299	-		GFF4127	0.23	+0.0
4,151,304	-		GFF4127	0.24	-2.3
4,151,304	-		GFF4127	0.24	+1.5
4,151,304	-		GFF4127	0.24	+0.4
4,151,335	+		GFF4127	0.29	-1.4
4,151,342	+		GFF4127	0.30	-1.0
4,151,353	+		GFF4127	0.32	+1.3
4,151,373	-		GFF4127	0.35	-0.4
4,151,375	+		GFF4127	0.36	+0.5
4,151,375	+		GFF4127	0.36	+0.3
4,151,378	-		GFF4127	0.36	-0.1
4,151,415	-		GFF4127	0.42	+0.0
4,151,421	+		GFF4127	0.43	+0.2
4,151,422	-		GFF4127	0.43	-0.1
4,151,458	+		GFF4127	0.49	-0.6
4,151,458	+		GFF4127	0.49	-0.6
4,151,466	-		GFF4127	0.51	-0.7
4,151,466	-		GFF4127	0.51	-1.7
4,151,481	-		GFF4127	0.53	+0.0
4,151,482	+		GFF4127	0.53	-1.3
4,151,486	-		GFF4127	0.54	+1.2
4,151,486	-		GFF4127	0.54	-1.0
4,151,546	-		GFF4127	0.64	-2.4
4,151,553	+		GFF4127	0.65	-0.3
4,151,559	+		GFF4127	0.66	-0.8
4,151,564	+		GFF4127	0.67	+0.5
4,151,600	-		GFF4127	0.73	+0.2
4,151,603	+		GFF4127	0.73	+0.1
4,151,611	-		GFF4127	0.74	+0.8
4,151,611	-		GFF4127	0.74	+0.1
4,151,611	-		GFF4127	0.74	-0.0
4,151,613	-		GFF4127	0.75	-1.0
4,151,699	+		GFF4127	0.89	+0.6
4,151,699	+		GFF4127	0.89	-0.4
4,151,699	+		GFF4127	0.89	+0.6
4,151,699	+		GFF4127	0.89	-0.4
4,151,699	+		GFF4127	0.89	+0.9
4,151,699	+		GFF4127	0.89	-1.3
4,151,699	+		GFF4127	0.89	+0.4
4,151,699	+		GFF4127	0.89	-0.6
4,151,707	-				-0.3
4,151,707	-				+0.5
4,151,707	-				+0.2
4,151,707	-				-1.0
4,151,707	-				-0.2
4,151,709	-				-0.4
4,151,761	-				+1.9
4,151,769	-				-0.9
4,151,769	-				-1.7
4,151,769	-				-1.7
4,151,780	+				-2.0
4,151,807	+				-0.3
4,151,815	+				-0.7
4,151,836	+				-2.1
4,151,847	+				-0.1
4,151,847	+				+0.4
4,151,847	+				-0.2
4,151,847	+				-0.7
4,151,847	+				-1.6
4,151,847	+				+1.1
4,151,849	-				+0.4
4,151,855	-				+0.2
4,151,855	-				+1.3
4,151,857	+				-0.4
4,151,857	+				-2.1
4,151,857	+				-1.8
4,151,865	-				-0.2
4,151,865	-				+0.9
4,151,865	-				+1.6
4,151,865	-				+1.0
4,151,865	-				-0.4
4,151,865	-				-1.7
4,151,865	-				+1.7
4,151,884	-				+0.1
4,151,894	+				-1.3
4,151,894	+				+0.1
4,151,894	+				-1.3
4,151,894	+				-0.8
4,151,899	+				+0.0
4,151,902	-				-0.6
4,151,902	-				-0.2
4,151,917	-				-0.3
4,151,967	+				+1.6
4,151,973	+				-0.2
4,151,973	+				+0.3
4,151,975	-				-0.7
4,152,009	+				-1.9
4,152,017	-				-0.4
4,152,017	-				-0.5
4,152,060	+				+0.6
4,152,073	+		GFF4128	0.10	+1.0
4,152,081	-		GFF4128	0.10	-1.3
4,152,087	+		GFF4128	0.11	+0.3
4,152,087	+		GFF4128	0.11	+0.6
4,152,091	+		GFF4128	0.11	-1.6
4,152,095	-		GFF4128	0.11	-1.9
4,152,105	+		GFF4128	0.11	+0.3
4,152,110	+		GFF4128	0.12	-1.7
4,152,110	+		GFF4128	0.12	-0.7
4,152,113	-		GFF4128	0.12	-0.6
4,152,113	-		GFF4128	0.12	-0.4
4,152,133	+		GFF4128	0.12	-0.6
4,152,141	-		GFF4128	0.13	+0.0
4,152,154	-		GFF4128	0.13	+0.3
4,152,169	-		GFF4128	0.14	+0.8
4,152,177	+		GFF4128	0.14	+1.0
4,152,182	+		GFF4128	0.14	-1.0
4,152,187	+		GFF4128	0.14	+0.3
4,152,188	+		GFF4128	0.15	-0.9
4,152,247	+		GFF4128	0.17	-1.2
4,152,264	+		GFF4128	0.17	-0.7
4,152,291	+		GFF4128	0.18	+1.0
4,152,324	-		GFF4128	0.20	-2.0
4,152,337	-		GFF4128	0.20	-1.5
4,152,349	-		GFF4128	0.21	+0.8
4,152,363	-		GFF4128	0.21	+0.0
4,152,375	+		GFF4128	0.22	-0.3
4,152,378	-		GFF4128	0.22	-2.7
4,152,378	-		GFF4128	0.22	+0.2
4,152,380	+		GFF4128	0.22	-1.5
4,152,415	+		GFF4128	0.23	+0.3
4,152,415	+		GFF4128	0.23	+2.3
4,152,448	-		GFF4128	0.25	-0.2
4,152,485	+		GFF4128	0.26	-1.1
4,152,485	+		GFF4128	0.26	-2.8
4,152,485	+		GFF4128	0.26	-1.3
4,152,493	+		GFF4128	0.26	-1.9
4,152,493	-		GFF4128	0.26	+1.8
4,152,493	-		GFF4128	0.26	+0.3
4,152,493	-		GFF4128	0.26	-2.0
4,152,493	-		GFF4128	0.26	-1.1
4,152,530	-		GFF4128	0.28	-1.0
4,152,532	+		GFF4128	0.28	+1.1
4,152,552	-		GFF4128	0.28	+0.2
4,152,552	-		GFF4128	0.28	-1.1
4,152,554	-		GFF4128	0.29	-0.7
4,152,607	+		GFF4128	0.31	+0.2
4,152,618	+		GFF4128	0.31	-2.2
4,152,620	+		GFF4128	0.31	+0.3
4,152,626	-		GFF4128	0.31	-2.4
4,152,626	-		GFF4128	0.31	-0.6
4,152,626	-		GFF4128	0.31	-2.1
4,152,667	+		GFF4128	0.33	-1.5
4,152,677	+		GFF4128	0.33	-0.7
4,152,703	-		GFF4128	0.34	-1.0
4,152,709	+		GFF4128	0.35	+0.4
4,152,709	+		GFF4128	0.35	-0.0
4,152,727	-		GFF4128	0.35	+0.6
4,152,731	+		GFF4128	0.35	-0.3
4,152,766	+		GFF4128	0.37	-0.7
4,152,766	+		GFF4128	0.37	+0.3
4,152,766	+		GFF4128	0.37	-0.3