Strain Fitness in Sphingobium sp. HT1-2 around GFF4121

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,143,574	-		GFF4120	0.26	-0.1
4,143,589	-		GFF4120	0.28	-0.6
4,143,610	+		GFF4120	0.29	-0.9
4,143,610	+		GFF4120	0.29	+0.6
4,143,616	-		GFF4120	0.30	-0.3
4,143,618	-		GFF4120	0.30	-0.7
4,143,618	-		GFF4120	0.30	-0.4
4,143,618	-		GFF4120	0.30	+0.1
4,143,618	-		GFF4120	0.30	-0.9
4,143,629	+		GFF4120	0.31	-0.5
4,143,643	-		GFF4120	0.32	-1.3
4,143,665	+		GFF4120	0.33	-0.1
4,143,665	+		GFF4120	0.33	+1.2
4,143,665	+		GFF4120	0.33	+0.1
4,143,665	+		GFF4120	0.33	-0.8
4,143,665	+		GFF4120	0.33	-0.6
4,143,665	+		GFF4120	0.33	+0.4
4,143,665	+		GFF4120	0.33	-0.7
4,143,673	-		GFF4120	0.34	-1.0
4,143,673	-		GFF4120	0.34	+0.1
4,143,673	-		GFF4120	0.34	-3.1
4,143,673	-		GFF4120	0.34	-0.7
4,143,673	-		GFF4120	0.34	-0.2
4,143,673	-		GFF4120	0.34	+1.4
4,143,673	-		GFF4120	0.34	-0.7
4,143,673	-		GFF4120	0.34	-0.2
4,143,673	-		GFF4120	0.34	+0.6
4,143,673	-		GFF4120	0.34	+1.0
4,143,673	-		GFF4120	0.34	+0.1
4,143,717	-		GFF4120	0.37	-1.3
4,143,717	-		GFF4120	0.37	-0.9
4,143,718	-		GFF4120	0.37	+0.2
4,143,722	-		GFF4120	0.38	+1.2
4,143,778	-		GFF4120	0.42	-2.6
4,143,779	+		GFF4120	0.42	+0.0
4,143,779	+		GFF4120	0.42	-0.5
4,143,779	+		GFF4120	0.42	-2.6
4,143,779	+		GFF4120	0.42	-1.7
4,143,779	+		GFF4120	0.42	+1.2
4,143,779	+		GFF4120	0.42	+0.6
4,143,786	+		GFF4120	0.42	+0.1
4,143,787	-		GFF4120	0.42	-0.9
4,143,787	-		GFF4120	0.42	-0.3
4,143,787	-		GFF4120	0.42	+0.6
4,143,787	-		GFF4120	0.42	-0.2
4,143,788	-		GFF4120	0.42	-2.1
4,143,794	-		GFF4120	0.43	+0.2
4,143,794	-		GFF4120	0.43	-0.2
4,143,794	-		GFF4120	0.43	-0.5
4,143,799	-		GFF4120	0.43	-0.2
4,143,801	+		GFF4120	0.43	+0.1
4,143,806	+		GFF4120	0.44	-2.4
4,143,806	+		GFF4120	0.44	+0.0
4,143,809	-		GFF4120	0.44	-0.5
4,143,809	-		GFF4120	0.44	+0.3
4,143,809	-		GFF4120	0.44	-1.1
4,143,840	+		GFF4120	0.46	-0.7
4,143,840	+		GFF4120	0.46	-0.0
4,143,840	+		GFF4120	0.46	-0.1
4,143,848	-		GFF4120	0.47	-0.7
4,143,891	+		GFF4120	0.50	-0.2
4,143,904	-		GFF4120	0.51	-0.2
4,143,928	-		GFF4120	0.53	+0.3
4,143,928	-		GFF4120	0.53	+1.0
4,143,942	+		GFF4120	0.54	+0.3
4,143,950	-		GFF4120	0.55	+1.8
4,143,950	-		GFF4120	0.55	-0.2
4,143,962	+		GFF4120	0.55	-1.7
4,143,990	-		GFF4120	0.57	-0.5
4,143,990	-		GFF4120	0.57	-0.4
4,144,050	-		GFF4120	0.62	-1.3
4,144,053	+		GFF4120	0.62	-0.4
4,144,053	-		GFF4120	0.62	-1.6
4,144,055	+		GFF4120	0.62	-0.7
4,144,055	+		GFF4120	0.62	+0.8
4,144,055	+		GFF4120	0.62	-0.7
4,144,058	-		GFF4120	0.63	-0.4
4,144,063	+		GFF4120	0.63	+0.9
4,144,063	-		GFF4120	0.63	+0.3
4,144,068	+		GFF4120	0.63	-0.4
4,144,096	+		GFF4120	0.65	-1.1
4,144,098	-		GFF4120	0.66	+1.1
4,144,103	-		GFF4120	0.66	-0.2
4,144,109	-		GFF4120	0.66	+0.0
4,144,122	+		GFF4120	0.67	-1.0
4,144,122	+		GFF4120	0.67	-0.9
4,144,132	+		GFF4120	0.68	-0.1
4,144,132	+		GFF4120	0.68	+1.3
4,144,132	+		GFF4120	0.68	-0.7
4,144,132	+		GFF4120	0.68	-0.9
4,144,132	+		GFF4120	0.68	-1.2
4,144,132	+		GFF4120	0.68	-2.0
4,144,140	-		GFF4120	0.69	+0.8
4,144,140	-		GFF4120	0.69	+1.3
4,144,140	-		GFF4120	0.69	-1.0
4,144,140	-		GFF4120	0.69	-1.6
4,144,151	+		GFF4120	0.70	-0.6
4,144,184	+		GFF4120	0.72	-0.4
4,144,184	+		GFF4120	0.72	+0.8
4,144,184	+		GFF4120	0.72	+0.3
4,144,184	+		GFF4120	0.72	+0.1
4,144,184	+		GFF4120	0.72	+0.4
4,144,184	+		GFF4120	0.72	+0.9
4,144,184	+		GFF4120	0.72	+0.4
4,144,184	+		GFF4120	0.72	-2.2
4,144,184	+		GFF4120	0.72	-0.7
4,144,184	+		GFF4120	0.72	-2.9
4,144,184	+		GFF4120	0.72	-0.7
4,144,185	+		GFF4120	0.72	+0.8
4,144,185	+		GFF4120	0.72	-1.3
4,144,185	+		GFF4120	0.72	+1.1
4,144,192	-		GFF4120	0.73	-0.2
4,144,192	-		GFF4120	0.73	+1.0
4,144,192	-		GFF4120	0.73	+0.0
4,144,192	-		GFF4120	0.73	+0.2
4,144,192	-		GFF4120	0.73	-0.2
4,144,193	-		GFF4120	0.73	+0.2
4,144,249	-		GFF4120	0.77	-0.3
4,144,293	+		GFF4120	0.80	+0.5
4,144,309	-		GFF4120	0.81	-1.1
4,144,312	+		GFF4120	0.82	+0.8
4,144,312	+		GFF4120	0.82	-0.2
4,144,312	+		GFF4120	0.82	+0.7
4,144,320	-		GFF4120	0.82	+1.5
4,144,320	-		GFF4120	0.82	+0.8
4,144,343	-		GFF4120	0.84	+0.2
4,144,343	-		GFF4120	0.84	-0.2
4,144,363	-		GFF4120	0.85	+0.4
4,144,381	+		GFF4120	0.87	+0.2
4,144,381	-		GFF4120	0.87	-0.6
4,144,389	-		GFF4120	0.87	-0.6
4,144,389	-		GFF4120	0.87	-0.3
4,144,390	+		GFF4120	0.87	-0.3
4,144,390	+		GFF4120	0.87	-0.8
4,144,401	-		GFF4120	0.88	+0.9
4,144,456	-				-0.1
4,144,482	-				+1.0
4,144,498	+				-0.6
4,144,554	+				-0.1
4,144,554	+				+1.3
4,144,554	+				+0.4
4,144,554	+				-0.4
4,144,554	+				+0.4
4,144,554	+				+0.2
4,144,555	-				-1.1
4,144,556	+				-0.6
4,144,562	-				-0.0
4,144,562	-				-2.4
4,144,562	-				+0.3
4,144,575	+				+0.3
4,144,578	-				-1.2
4,144,583	-				+0.6
4,144,583	-				-0.7
4,144,589	+				-0.2
4,144,594	+				+1.9
4,144,602	-				+1.0
4,144,602	-				+0.5
4,144,656	-		GFF4121	0.10	+0.0
4,144,763	+		GFF4121	0.22	+0.0
4,144,763	+		GFF4121	0.22	+0.1
4,144,787	-		GFF4121	0.24	-0.0
4,144,788	+		GFF4121	0.25	+0.1
4,144,793	+		GFF4121	0.25	+1.1
4,144,793	+		GFF4121	0.25	-2.3
4,144,793	+		GFF4121	0.25	+1.4
4,144,793	+		GFF4121	0.25	-0.6
4,144,793	+		GFF4121	0.25	+0.2
4,144,795	+		GFF4121	0.25	+1.0
4,144,803	+		GFF4121	0.26	+0.3
4,144,803	-		GFF4121	0.26	+0.4
4,144,810	+		GFF4121	0.27	+0.0
4,144,818	-		GFF4121	0.28	+0.7
4,144,823	+		GFF4121	0.28	-0.7
4,144,823	+		GFF4121	0.28	+0.9
4,144,831	-		GFF4121	0.29	-1.4
4,144,863	-		GFF4121	0.33	+0.3
4,144,863	-		GFF4121	0.33	-1.3
4,144,885	-		GFF4121	0.35	-0.2
4,144,886	-		GFF4121	0.35	-1.2
4,144,886	-		GFF4121	0.35	-0.1
4,144,934	+		GFF4121	0.40	+0.4
4,144,952	+		GFF4121	0.42	+0.4
4,144,987	+		GFF4121	0.46	+0.2
4,144,999	-		GFF4121	0.47	+1.3
4,145,005	+		GFF4121	0.48	+0.8
4,145,042	+		GFF4121	0.52	+0.4
4,145,045	-		GFF4121	0.52	+0.5
4,145,045	-		GFF4121	0.52	-2.8
4,145,064	+		GFF4121	0.54	+0.6
4,145,064	+		GFF4121	0.54	+0.4
4,145,064	+		GFF4121	0.54	-1.3
4,145,064	+		GFF4121	0.54	+0.5
4,145,064	+		GFF4121	0.54	-0.2
4,145,064	+		GFF4121	0.54	+1.6
4,145,064	+		GFF4121	0.54	+0.7
4,145,064	+		GFF4121	0.54	+0.1
4,145,064	+		GFF4121	0.54	-1.7
4,145,072	-		GFF4121	0.55	-0.0
4,145,072	-		GFF4121	0.55	-1.4
4,145,072	-		GFF4121	0.55	+1.4
4,145,072	-		GFF4121	0.55	+1.1
4,145,072	-		GFF4121	0.55	-1.7
4,145,127	-		GFF4121	0.61	-0.5
4,145,127	-		GFF4121	0.61	-1.2
4,145,154	-		GFF4121	0.64	+1.1
4,145,230	+		GFF4121	0.72	+0.6
4,145,230	+		GFF4121	0.72	+0.5
4,145,230	+		GFF4121	0.72	-0.4
4,145,230	+		GFF4121	0.72	+0.4
4,145,230	+		GFF4121	0.72	-0.9
4,145,230	+		GFF4121	0.72	+0.0
4,145,238	-		GFF4121	0.73	-0.9
4,145,238	-		GFF4121	0.73	+0.1
4,145,238	-		GFF4121	0.73	+1.1
4,145,238	-		GFF4121	0.73	-0.9
4,145,238	-		GFF4121	0.73	+1.1
4,145,249	+		GFF4121	0.74	-1.7
4,145,272	+		GFF4121	0.76	-0.6
4,145,317	+		GFF4121	0.81	+0.9
4,145,329	+		GFF4121	0.83	-0.7
4,145,334	+		GFF4121	0.83	+0.3
4,145,337	-		GFF4121	0.83	-1.9
4,145,338	-		GFF4121	0.83	-0.5
4,145,360	+		GFF4121	0.86	-0.7
4,145,360	+		GFF4121	0.86	-1.0
4,145,360	+		GFF4121	0.86	-0.2
4,145,360	-		GFF4121	0.86	-0.7
4,145,368	-		GFF4121	0.87	+0.1
4,145,368	-		GFF4121	0.87	+0.2
4,145,368	-		GFF4121	0.87	+0.3
4,145,418	+				+0.6
4,145,418	+				-1.3
4,145,428	+				-0.3
4,145,444	+				-2.2
4,145,473	+				-0.1
4,145,479	-				-1.9
4,145,485	+				-0.9
4,145,485	+				-1.4
4,145,490	+				-2.1
4,145,490	+				-0.9
4,145,493	-				-0.0
4,145,493	-				-0.7
4,145,493	-				+0.7
4,145,493	-				+0.4
4,145,494	-				-1.4
4,145,543	+				+0.2
4,145,543	-				-0.4
4,145,545	+				-0.9
4,145,550	+				+1.0
4,145,556	+				-0.4
4,145,561	+				+0.4
4,145,592	+				+0.7
4,145,597	+				-0.5
4,145,602	+				-0.2
4,145,602	+				-0.5
4,145,602	+				+0.3
4,145,607	+				-0.6
4,145,610	-				-0.9
4,145,610	-				+1.0
4,145,612	+				-2.2
4,145,620	-				+0.3
4,145,622	+				+0.2
4,145,633	+				+0.5
4,145,651	-				-0.2
4,145,668	+				-0.3
4,145,719	+				-0.8
4,145,719	+				-1.2
4,145,719	+				-1.9
4,145,719	+				-0.6
4,145,719	+				-1.8
4,145,719	+				-1.0
4,145,719	+				+0.5
4,145,719	+				-0.3
4,145,727	-				+0.3
4,145,755	-		GFF4122	0.11	-0.9
4,145,757	+		GFF4122	0.11	+0.1
4,145,758	+		GFF4122	0.11	-0.9
4,145,758	+		GFF4122	0.11	-0.2
4,145,758	+		GFF4122	0.11	-1.0
4,145,758	+		GFF4122	0.11	-1.7
4,145,758	+		GFF4122	0.11	-0.6
4,145,758	+		GFF4122	0.11	-1.5
4,145,758	+		GFF4122	0.11	+0.1
4,145,766	+		GFF4122	0.11	+0.6
4,145,766	-		GFF4122	0.11	+0.2
4,145,766	-		GFF4122	0.11	-0.2
4,145,798	+		GFF4122	0.13	+0.9
4,145,801	-		GFF4122	0.13	+1.1
4,145,801	-		GFF4122	0.13	+0.1
4,145,803	+		GFF4122	0.13	-1.3
4,145,816	-		GFF4122	0.14	-0.2
4,145,823	+		GFF4122	0.14	-0.2
4,145,830	-		GFF4122	0.15	+0.3
4,145,832	+		GFF4122	0.15	+1.4
4,145,832	+		GFF4122	0.15	+0.2
4,145,865	+		GFF4122	0.17	+0.2
4,145,865	+		GFF4122	0.17	-2.8
4,145,865	+		GFF4122	0.17	+0.1
4,145,878	-		GFF4122	0.17	-0.0
4,145,883	+		GFF4122	0.17	-1.6
4,145,883	+		GFF4122	0.17	-0.9
4,145,883	+		GFF4122	0.17	+1.0
4,145,883	+		GFF4122	0.17	+1.7
4,145,883	+		GFF4122	0.17	+0.7
4,145,891	-		GFF4122	0.18	-0.1
4,145,908	+		GFF4122	0.19	-0.3
4,145,915	+		GFF4122	0.19	-1.4
4,145,942	-		GFF4122	0.21	+0.1
4,145,949	+		GFF4122	0.21	+0.2
4,145,972	+		GFF4122	0.22	-0.3
4,145,974	-		GFF4122	0.22	-0.0
4,145,980	-		GFF4122	0.23	-0.0
4,146,000	+		GFF4122	0.24	+0.9
4,146,000	+		GFF4122	0.24	-0.1
4,146,000	+		GFF4122	0.24	+0.5
4,146,000	-		GFF4122	0.24	-0.9
4,146,003	-		GFF4122	0.24	+0.3
4,146,005	+		GFF4122	0.24	-1.8
4,146,005	+		GFF4122	0.24	-1.1
4,146,008	-		GFF4122	0.24	-0.2
4,146,008	-		GFF4122	0.24	-1.4
4,146,008	-		GFF4122	0.24	+0.1
4,146,008	-		GFF4122	0.24	-0.9
4,146,010	+		GFF4122	0.24	-0.7
4,146,018	-		GFF4122	0.25	-1.9
4,146,018	-		GFF4122	0.25	-1.1
4,146,026	+		GFF4122	0.25	-1.4
4,146,078	-		GFF4122	0.28	-0.9
4,146,078	-		GFF4122	0.28	-0.8
4,146,078	-		GFF4122	0.28	-0.0
4,146,078	-		GFF4122	0.28	-0.9
4,146,082	+		GFF4122	0.28	-0.4
4,146,087	+		GFF4122	0.28	+0.3
4,146,090	-		GFF4122	0.29	+0.4
4,146,090	-		GFF4122	0.29	+0.1
4,146,090	-		GFF4122	0.29	-1.3
4,146,090	-		GFF4122	0.29	-1.8
4,146,097	+		GFF4122	0.29	+0.5
4,146,105	-		GFF4122	0.29	-0.8
4,146,105	-		GFF4122	0.29	-0.6
4,146,105	-		GFF4122	0.29	-0.1
4,146,118	-		GFF4122	0.30	+0.7
4,146,134	+		GFF4122	0.31	+0.3
4,146,142	-		GFF4122	0.31	-1.3
4,146,183	+		GFF4122	0.34	+1.2
4,146,183	+		GFF4122	0.34	-1.9
4,146,183	+		GFF4122	0.34	-0.2
4,146,191	-		GFF4122	0.34	-1.2
4,146,191	-		GFF4122	0.34	-0.1
4,146,191	-		GFF4122	0.34	+0.1
4,146,196	-		GFF4122	0.34	-1.4
4,146,196	-		GFF4122	0.34	-0.4
4,146,196	-		GFF4122	0.34	+0.1
4,146,231	-		GFF4122	0.36	-0.6
4,146,237	-		GFF4122	0.37	-0.0
4,146,251	+		GFF4122	0.37	-1.7
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