Strain Fitness in Sphingobium sp. HT1-2 around GFF4118

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,137,077	-		GFF4116	0.85	-0.6
4,137,080	+		GFF4116	0.86	+0.7
4,137,082	-		GFF4116	0.86	-2.4
4,137,088	+		GFF4116	0.88	+0.2
4,137,106	+				+0.9
4,137,145	+				+0.8
4,137,171	+				-0.3
4,137,214	+				+0.3
4,137,214	+				-0.4
4,137,214	+				+0.7
4,137,222	-				+0.8
4,137,222	-				-0.8
4,137,222	-				-0.7
4,137,222	-				+1.3
4,137,222	-				-0.7
4,137,222	-				-2.1
4,137,222	-				-0.4
4,137,222	-				-0.2
4,137,222	-				+0.2
4,137,222	-				+0.0
4,137,225	+				-1.5
4,137,240	+				+0.0
4,137,248	-				-1.1
4,137,287	-		GFF4117	0.11	-0.5
4,137,338	-		GFF4117	0.18	+0.3
4,137,341	+		GFF4117	0.19	-0.7
4,137,343	+		GFF4117	0.19	-0.8
4,137,346	+		GFF4117	0.19	-0.4
4,137,366	+		GFF4117	0.22	-1.8
4,137,366	+		GFF4117	0.22	+0.6
4,137,366	+		GFF4117	0.22	-0.8
4,137,374	-		GFF4117	0.23	-0.1
4,137,374	-		GFF4117	0.23	-0.2
4,137,374	-		GFF4117	0.23	+0.5
4,137,374	-		GFF4117	0.23	-1.0
4,137,393	-		GFF4117	0.26	-0.9
4,137,412	+		GFF4117	0.28	-0.4
4,137,442	-		GFF4117	0.32	+0.5
4,137,451	+		GFF4117	0.33	-0.8
4,137,459	-		GFF4117	0.34	-1.8
4,137,471	+		GFF4117	0.36	+0.7
4,137,494	+		GFF4117	0.39	-0.7
4,137,494	+		GFF4117	0.39	+0.1
4,137,502	-		GFF4117	0.40	+0.5
4,137,565	+		GFF4117	0.49	-1.9
4,137,573	-		GFF4117	0.50	-1.9
4,137,581	-		GFF4117	0.51	-0.1
4,137,581	-		GFF4117	0.51	+1.0
4,137,600	+		GFF4117	0.53	-2.7
4,137,608	-		GFF4117	0.54	-0.6
4,137,610	+		GFF4117	0.55	-0.6
4,137,612	-		GFF4117	0.55	+0.2
4,137,612	-		GFF4117	0.55	-0.5
4,137,612	-		GFF4117	0.55	+0.4
4,137,613	-		GFF4117	0.55	+0.1
4,137,618	-		GFF4117	0.56	-1.1
4,137,618	-		GFF4117	0.56	-2.3
4,137,618	-		GFF4117	0.56	+0.5
4,137,626	+		GFF4117	0.57	-0.3
4,137,641	+		GFF4117	0.59	-1.6
4,137,641	+		GFF4117	0.59	+0.9
4,137,649	-		GFF4117	0.60	-0.0
4,137,655	+		GFF4117	0.61	-0.2
4,137,655	+		GFF4117	0.61	+0.5
4,137,655	+		GFF4117	0.61	+0.3
4,137,655	+		GFF4117	0.61	+0.0
4,137,655	+		GFF4117	0.61	-1.9
4,137,663	-		GFF4117	0.62	-1.2
4,137,663	-		GFF4117	0.62	-0.3
4,137,663	-		GFF4117	0.62	+0.3
4,137,663	-		GFF4117	0.62	+1.5
4,137,663	-		GFF4117	0.62	-1.8
4,137,663	-		GFF4117	0.62	-1.2
4,137,663	-		GFF4117	0.62	-1.3
4,137,668	-		GFF4117	0.62	-1.5
4,137,673	-		GFF4117	0.63	+0.1
4,137,678	+		GFF4117	0.64	+1.7
4,137,678	+		GFF4117	0.64	-0.8
4,137,686	-		GFF4117	0.65	+0.1
4,137,686	-		GFF4117	0.65	+0.6
4,137,686	-		GFF4117	0.65	+0.7
4,137,701	-		GFF4117	0.67	-2.3
4,137,704	+		GFF4117	0.67	+1.0
4,137,704	+		GFF4117	0.67	-1.1
4,137,704	+		GFF4117	0.67	-0.2
4,137,704	+		GFF4117	0.67	-1.8
4,137,704	+		GFF4117	0.67	-0.4
4,137,709	+		GFF4117	0.68	-0.4
4,137,712	-		GFF4117	0.68	-0.8
4,137,712	-		GFF4117	0.68	+0.0
4,137,712	-		GFF4117	0.68	-2.2
4,137,717	-		GFF4117	0.69	+0.3
4,137,729	+		GFF4117	0.71	+0.6
4,137,730	+		GFF4117	0.71	-0.2
4,137,737	-		GFF4117	0.72	-0.1
4,137,738	-		GFF4117	0.72	-1.4
4,137,758	-		GFF4117	0.75	+0.5
4,137,762	+		GFF4117	0.75	-0.3
4,137,762	+		GFF4117	0.75	+0.9
4,137,770	-		GFF4117	0.76	+0.4
4,137,770	-		GFF4117	0.76	-1.4
4,137,770	-		GFF4117	0.76	+0.1
4,137,770	-		GFF4117	0.76	-0.0
4,137,770	-		GFF4117	0.76	-0.9
4,137,806	+		GFF4117	0.81	-0.5
4,137,806	+		GFF4117	0.81	+0.2
4,137,859	-		GFF4117	0.88	-1.4
4,137,866	+		GFF4117	0.89	-0.5
4,137,881	+				+0.5
4,137,881	+				-0.8
4,137,881	+				-0.3
4,137,883	+				-1.2
4,137,889	-				-0.8
4,137,889	-				+0.4
4,137,889	-				+0.9
4,137,889	-				-0.7
4,137,889	-				-0.9
4,137,889	-				-0.5
4,137,899	-				-0.2
4,137,914	+				-1.1
4,137,925	+				-0.7
4,137,925	+				-0.1
4,137,947	+				-1.1
4,137,949	-				-0.3
4,137,949	-				-0.4
4,137,950	-				+1.0
4,137,952	+				-1.1
4,137,952	+				-0.0
4,137,961	+				-0.4
4,137,971	+				-0.7
4,137,979	-				-0.0
4,137,986	+				-1.0
4,137,992	-				-1.8
4,137,992	-				+0.7
4,137,992	-				-1.3
4,137,992	-				+0.7
4,138,006	+				-0.2
4,138,013	+				+0.7
4,138,013	+				-0.2
4,138,013	+				+0.8
4,138,013	+				+0.6
4,138,013	+				+0.7
4,138,014	-				-0.0
4,138,019	+				-0.5
4,138,021	-				+0.7
4,138,021	-				+1.7
4,138,021	-				+0.6
4,138,021	-				-0.1
4,138,027	-				+0.3
4,138,027	-				-0.7
4,138,032	-				+0.3
4,138,045	-				-0.4
4,138,055	-				-1.5
4,138,056	+				-1.2
4,138,056	+				+1.3
4,138,056	+				-0.6
4,138,056	+				-1.4
4,138,056	+				-0.8
4,138,056	+				+0.1
4,138,056	+				-0.2
4,138,056	+				-1.9
4,138,056	-				-3.0
4,138,064	-				-0.1
4,138,064	-				-0.1
4,138,064	-				-0.8
4,138,064	-				-0.0
4,138,064	-				-1.8
4,138,064	-				+1.2
4,138,064	-				+0.1
4,138,064	-				-1.4
4,138,073	+				+0.2
4,138,074	+				-1.8
4,138,082	-				+0.2
4,138,082	-				-0.4
4,138,082	-				+0.1
4,138,082	-				+0.0
4,138,089	+				-0.7
4,138,114	+				-0.7
4,138,117	-				-0.1
4,138,138	+				-1.3
4,138,138	+				+0.7
4,138,138	+				-1.7
4,138,138	+				+1.3
4,138,141	-				-0.4
4,138,146	-				+0.5
4,138,146	-				-0.1
4,138,157	+				-0.2
4,138,157	+				+0.2
4,138,157	+				+0.3
4,138,165	-				-1.8
4,138,165	-				+0.7
4,138,195	+				+0.3
4,138,196	+				-0.8
4,138,203	-				-0.6
4,138,203	-				+1.0
4,138,227	+				-0.9
4,138,227	+				-1.7
4,138,231	-				-0.5
4,138,235	-				+0.3
4,138,235	-				+0.5
4,138,235	-				-0.8
4,138,240	+				+0.0
4,138,294	+				+0.7
4,138,297	-				-0.6
4,138,303	+				+1.0
4,138,303	+				+0.2
4,138,303	+				-0.9
4,138,308	+				-0.3
4,138,308	+				-1.1
4,138,311	-				+0.7
4,138,311	-				-0.8
4,138,311	-				-0.4
4,138,311	-				-1.4
4,138,311	-				+0.2
4,138,311	-				+1.1
4,138,318	+				-1.0
4,138,321	-		GFF4118	0.10	-0.1
4,138,345	+		GFF4118	0.11	+0.3
4,138,350	+		GFF4118	0.11	+0.0
4,138,358	-		GFF4118	0.12	-0.8
4,138,379	+		GFF4118	0.13	+1.3
4,138,384	+		GFF4118	0.13	-0.0
4,138,384	+		GFF4118	0.13	+0.5
4,138,384	+		GFF4118	0.13	+0.3
4,138,384	+		GFF4118	0.13	+0.2
4,138,384	+		GFF4118	0.13	-1.7
4,138,384	+		GFF4118	0.13	+0.0
4,138,384	+		GFF4118	0.13	-0.5
4,138,384	+		GFF4118	0.13	-1.5
4,138,384	+		GFF4118	0.13	-0.7
4,138,384	+		GFF4118	0.13	-0.9
4,138,384	+		GFF4118	0.13	-1.4
4,138,384	+		GFF4118	0.13	-0.2
4,138,384	+		GFF4118	0.13	+0.3
4,138,384	+		GFF4118	0.13	-0.1
4,138,384	+		GFF4118	0.13	-0.0
4,138,384	+		GFF4118	0.13	-1.3
4,138,392	-		GFF4118	0.13	+0.2
4,138,392	-		GFF4118	0.13	-2.5
4,138,392	-		GFF4118	0.13	+0.4
4,138,392	-		GFF4118	0.13	+0.6
4,138,392	-		GFF4118	0.13	-0.9
4,138,392	-		GFF4118	0.13	-0.6
4,138,392	-		GFF4118	0.13	-1.1
4,138,418	+		GFF4118	0.14	+0.2
4,138,418	+		GFF4118	0.14	+1.3
4,138,418	+		GFF4118	0.14	-0.2
4,138,418	+		GFF4118	0.14	+0.8
4,138,450	+		GFF4118	0.15	-1.3
4,138,458	-		GFF4118	0.16	+0.0
4,138,458	-		GFF4118	0.16	+0.3
4,138,458	-		GFF4118	0.16	-3.1
4,138,475	-		GFF4118	0.17	+0.2
4,138,477	-		GFF4118	0.17	+0.4
4,138,477	-		GFF4118	0.17	-2.5
4,138,529	-		GFF4118	0.19	-0.2
4,138,537	+		GFF4118	0.19	-0.0
4,138,537	+		GFF4118	0.19	-1.3
4,138,538	-		GFF4118	0.19	-0.5
4,138,545	+		GFF4118	0.19	+0.4
4,138,545	-		GFF4118	0.19	-0.4
4,138,551	-		GFF4118	0.20	-0.8
4,138,553	-		GFF4118	0.20	+0.2
4,138,559	+		GFF4118	0.20	+0.3
4,138,567	-		GFF4118	0.20	-0.4
4,138,567	-		GFF4118	0.20	-0.7
4,138,582	-		GFF4118	0.21	+0.2
4,138,589	+		GFF4118	0.21	-1.0
4,138,589	-		GFF4118	0.21	+0.3
4,138,589	-		GFF4118	0.21	-0.4
4,138,590	+		GFF4118	0.21	-1.0
4,138,595	+		GFF4118	0.21	-0.9
4,138,597	-		GFF4118	0.22	-0.4
4,138,626	-		GFF4118	0.23	-1.8
4,138,655	+		GFF4118	0.24	-0.5
4,138,663	-		GFF4118	0.24	-1.0
4,138,681	-		GFF4118	0.25	+0.5
4,138,702	+		GFF4118	0.26	+0.1
4,138,702	+		GFF4118	0.26	-0.8
4,138,710	-		GFF4118	0.26	-0.2
4,138,710	-		GFF4118	0.26	-1.4
4,138,710	-		GFF4118	0.26	-1.0
4,138,716	-		GFF4118	0.26	+1.6
4,138,723	+		GFF4118	0.27	-0.8
4,138,723	+		GFF4118	0.27	-1.0
4,138,731	-		GFF4118	0.27	-0.2
4,138,733	+		GFF4118	0.27	+0.2
4,138,741	-		GFF4118	0.28	-1.0
4,138,741	-		GFF4118	0.28	-0.1
4,138,741	-		GFF4118	0.28	-0.7
4,138,741	-		GFF4118	0.28	-0.1
4,138,742	-		GFF4118	0.28	+0.4
4,138,754	+		GFF4118	0.28	+0.9
4,138,754	+		GFF4118	0.28	+1.5
4,138,754	+		GFF4118	0.28	-2.3
4,138,754	+		GFF4118	0.28	+0.2
4,138,794	+		GFF4118	0.30	-1.8
4,138,813	+		GFF4118	0.31	+0.2
4,138,823	+		GFF4118	0.31	+0.6
4,138,833	-		GFF4118	0.31	+1.1
4,138,885	+		GFF4118	0.33	+0.6
4,138,885	+		GFF4118	0.33	+0.1
4,138,887	+		GFF4118	0.34	+0.4
4,138,893	-		GFF4118	0.34	-0.1
4,138,893	-		GFF4118	0.34	-0.0
4,138,893	-		GFF4118	0.34	-0.8
4,138,893	-		GFF4118	0.34	-1.9
4,138,893	-		GFF4118	0.34	+1.1
4,138,893	-		GFF4118	0.34	+0.5
4,138,893	-		GFF4118	0.34	-0.2
4,138,893	-		GFF4118	0.34	-1.1
4,138,915	+		GFF4118	0.35	-2.8
4,138,918	-		GFF4118	0.35	-2.4
4,138,918	-		GFF4118	0.35	-0.8
4,138,928	-		GFF4118	0.35	-0.2
4,138,943	-		GFF4118	0.36	+0.1
4,138,956	+		GFF4118	0.36	-0.6
4,138,973	+		GFF4118	0.37	-0.6
4,138,973	+		GFF4118	0.37	-0.1
4,138,995	+		GFF4118	0.38	+0.6
4,138,997	+		GFF4118	0.38	+0.2
4,138,997	+		GFF4118	0.38	+0.7
4,138,997	+		GFF4118	0.38	-1.2
4,139,001	-		GFF4118	0.38	-0.4
4,139,003	-		GFF4118	0.38	+0.6
4,139,005	+		GFF4118	0.38	-1.0
4,139,005	+		GFF4118	0.38	-0.4
4,139,016	+		GFF4118	0.39	+0.4
4,139,044	-		GFF4118	0.40	-2.8
4,139,108	+		GFF4118	0.43	-1.3
4,139,112	+		GFF4118	0.43	-1.5
4,139,148	-		GFF4118	0.44	+0.2
4,139,150	+		GFF4118	0.44	+0.8
4,139,150	+		GFF4118	0.44	+1.2
4,139,150	+		GFF4118	0.44	+0.8
4,139,150	+		GFF4118	0.44	-0.4
4,139,150	+		GFF4118	0.44	-0.4
4,139,158	-		GFF4118	0.45	-2.2
4,139,158	-		GFF4118	0.45	+0.0
4,139,158	-		GFF4118	0.45	-0.7
4,139,158	-		GFF4118	0.45	+0.9
4,139,167	+		GFF4118	0.45	+0.5
4,139,173	-		GFF4118	0.45	-0.2
4,139,173	-		GFF4118	0.45	-0.3
4,139,173	-		GFF4118	0.45	-0.9
4,139,173	-		GFF4118	0.45	-0.7
4,139,195	+		GFF4118	0.46	-2.4
4,139,196	-		GFF4118	0.46	-1.9
4,139,204	-		GFF4118	0.47	-0.5
4,139,208	+		GFF4118	0.47	+0.5
4,139,209	-		GFF4118	0.47	-1.4
4,139,210	-		GFF4118	0.47	-0.4
4,139,211	-		GFF4118	0.47	+0.2
4,139,224	+		GFF4118	0.48	-1.1
4,139,227	+		GFF4118	0.48	+0.3
4,139,227	+		GFF4118	0.48	+0.9
4,139,227	+		GFF4118	0.48	+0.3
4,139,229	+		GFF4118	0.48	-0.0
4,139,229	+		GFF4118	0.48	-1.3
4,139,230	-		GFF4118	0.48	+0.2
4,139,232	-		GFF4118	0.48	+0.6
4,139,234	+		GFF4118	0.48	-0.7
4,139,234	+		GFF4118	0.48	+1.7
4,139,235	-		GFF4118	0.48	-0.1
4,139,235	-		GFF4118	0.48	+0.5
4,139,235	-		GFF4118	0.48	+0.3
4,139,242	-		GFF4118	0.48	-0.5
4,139,242	-		GFF4118	0.48	+0.2
4,139,242	-		GFF4118	0.48	-0.8
4,139,269	+		GFF4118	0.49	-0.7
4,139,279	+		GFF4118	0.50	-0.9
4,139,284	+		GFF4118	0.50	-1.2
4,139,284	+		GFF4118	0.50	-0.8
4,139,287	-		GFF4118	0.50	-0.4
4,139,287	-		GFF4118	0.50	-0.2
4,139,289	+		GFF4118	0.50	-0.3
4,139,292	-		GFF4118	0.50	+0.1
4,139,305	+		GFF4118	0.51	-0.8
4,139,310	+		GFF4118	0.51	-0.1
4,139,313	-		GFF4118	0.51	+0.3
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4,139,962	-		GFF4118	0.78	-0.8
4,139,962	-		GFF4118	0.78	+1.0
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4,139,962	-		GFF4118	0.78	-0.7
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4,140,275	+				+1.0
4,140,275	+				-0.8
4,140,275	+				+0.5
4,140,275	+				-1.2
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4,140,283	-				-0.4
4,140,283	-				-1.4
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4,140,464	+				-1.7
4,140,464	+				-0.4
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4,140,472	-				-2.1
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4,140,496	+				-2.3
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4,140,504	-				+0.2
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4,140,763	-				+2.3
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