Strain Fitness in Sphingobium sp. HT1-2 around GFF4109

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,129,412	+		GFF4108	0.38	+0.3
4,129,420	-		GFF4108	0.39	-0.2
4,129,441	+		GFF4108	0.40	-0.7
4,129,454	-		GFF4108	0.41	+0.8
4,129,454	-		GFF4108	0.41	+0.6
4,129,454	-		GFF4108	0.41	-1.9
4,129,454	-		GFF4108	0.41	+0.5
4,129,482	-		GFF4108	0.43	+0.7
4,129,487	+		GFF4108	0.43	+0.0
4,129,487	+		GFF4108	0.43	-1.3
4,129,487	+		GFF4108	0.43	-0.5
4,129,487	+		GFF4108	0.43	-0.1
4,129,487	+		GFF4108	0.43	-0.5
4,129,487	+		GFF4108	0.43	-0.2
4,129,487	+		GFF4108	0.43	+0.1
4,129,487	+		GFF4108	0.43	-0.0
4,129,487	+		GFF4108	0.43	-0.7
4,129,487	+		GFF4108	0.43	-1.8
4,129,487	+		GFF4108	0.43	-0.9
4,129,487	+		GFF4108	0.43	-0.6
4,129,487	+		GFF4108	0.43	-0.6
4,129,487	+		GFF4108	0.43	-0.7
4,129,489	-		GFF4108	0.43	-0.0
4,129,492	-		GFF4108	0.44	-1.0
4,129,495	-		GFF4108	0.44	-1.5
4,129,495	-		GFF4108	0.44	+0.0
4,129,495	-		GFF4108	0.44	+1.7
4,129,495	-		GFF4108	0.44	+0.5
4,129,495	-		GFF4108	0.44	-0.3
4,129,495	-		GFF4108	0.44	-0.2
4,129,495	-		GFF4108	0.44	-0.7
4,129,495	-		GFF4108	0.44	-0.4
4,129,507	+		GFF4108	0.45	+0.7
4,129,515	-		GFF4108	0.45	-0.5
4,129,515	-		GFF4108	0.45	-0.0
4,129,515	-		GFF4108	0.45	+0.9
4,129,535	+		GFF4108	0.46	-0.7
4,129,542	+		GFF4108	0.47	-2.5
4,129,568	-		GFF4108	0.49	-1.8
4,129,575	+		GFF4108	0.49	-1.4
4,129,575	+		GFF4108	0.49	-1.5
4,129,583	-		GFF4108	0.50	+1.2
4,129,583	-		GFF4108	0.50	-0.2
4,129,583	-		GFF4108	0.50	-1.1
4,129,595	-		GFF4108	0.51	-0.6
4,129,597	+		GFF4108	0.51	-0.2
4,129,597	+		GFF4108	0.51	-0.1
4,129,605	-		GFF4108	0.51	-0.7
4,129,616	-		GFF4108	0.52	-0.2
4,129,616	-		GFF4108	0.52	+1.2
4,129,617	-		GFF4108	0.52	-1.0
4,129,635	+		GFF4108	0.53	+0.3
4,129,651	-		GFF4108	0.54	-2.0
4,129,653	+		GFF4108	0.55	+0.3
4,129,669	+		GFF4108	0.56	+1.6
4,129,669	+		GFF4108	0.56	-0.0
4,129,669	+		GFF4108	0.56	-1.4
4,129,669	+		GFF4108	0.56	-0.6
4,129,669	+		GFF4108	0.56	+1.3
4,129,669	+		GFF4108	0.56	+0.0
4,129,677	-		GFF4108	0.56	-0.5
4,129,677	-		GFF4108	0.56	+0.3
4,129,677	-		GFF4108	0.56	+0.2
4,129,677	-		GFF4108	0.56	-1.3
4,129,677	-		GFF4108	0.56	+0.7
4,129,677	-		GFF4108	0.56	-2.3
4,129,677	-		GFF4108	0.56	-0.9
4,129,677	-		GFF4108	0.56	-0.4
4,129,677	-		GFF4108	0.56	-1.0
4,129,677	-		GFF4108	0.56	-0.4
4,129,697	+		GFF4108	0.58	-0.2
4,129,705	-		GFF4108	0.58	+0.4
4,129,720	+		GFF4108	0.59	-1.3
4,129,742	+		GFF4108	0.61	-0.1
4,129,742	+		GFF4108	0.61	-1.1
4,129,768	+		GFF4108	0.62	-0.1
4,129,778	-		GFF4108	0.63	-2.0
4,129,800	-		GFF4108	0.65	-0.6
4,129,802	+		GFF4108	0.65	-1.8
4,129,802	+		GFF4108	0.65	+0.1
4,129,810	-		GFF4108	0.65	+0.5
4,129,854	+		GFF4108	0.68	-1.1
4,129,854	+		GFF4108	0.68	-0.3
4,129,859	+		GFF4108	0.69	+0.0
4,129,862	-		GFF4108	0.69	+0.4
4,129,868	+		GFF4108	0.69	-2.8
4,129,882	+		GFF4108	0.70	-1.4
4,129,885	-		GFF4108	0.70	+0.2
4,129,885	-		GFF4108	0.70	-0.7
4,129,892	+		GFF4108	0.71	-1.4
4,129,898	+		GFF4108	0.71	-0.9
4,129,927	+		GFF4108	0.73	-0.4
4,129,930	-		GFF4108	0.73	-1.7
4,129,932	+		GFF4108	0.74	-0.3
4,129,934	-		GFF4108	0.74	-2.5
4,129,935	-		GFF4108	0.74	+0.3
4,129,937	+		GFF4108	0.74	-1.5
4,129,937	+		GFF4108	0.74	-0.2
4,129,937	+		GFF4108	0.74	-0.8
4,129,937	+		GFF4108	0.74	-1.2
4,129,937	+		GFF4108	0.74	+0.6
4,129,937	+		GFF4108	0.74	-1.2
4,129,940	-		GFF4108	0.74	+0.3
4,129,940	-		GFF4108	0.74	+0.3
4,129,940	-		GFF4108	0.74	-0.6
4,129,940	-		GFF4108	0.74	-0.3
4,129,940	-		GFF4108	0.74	-0.1
4,129,945	-		GFF4108	0.74	-1.7
4,129,945	-		GFF4108	0.74	-2.9
4,129,945	-		GFF4108	0.74	-0.4
4,129,945	-		GFF4108	0.74	-1.8
4,129,945	-		GFF4108	0.74	-0.3
4,129,945	-		GFF4108	0.74	-0.8
4,129,945	-		GFF4108	0.74	-0.4
4,129,945	-		GFF4108	0.74	-1.3
4,129,961	+		GFF4108	0.76	-0.7
4,129,970	+		GFF4108	0.76	-0.0
4,129,977	+		GFF4108	0.77	-1.7
4,129,980	-		GFF4108	0.77	-0.2
4,129,985	-		GFF4108	0.77	+0.2
4,129,993	-		GFF4108	0.78	+0.1
4,129,993	-		GFF4108	0.78	-0.3
4,130,038	+		GFF4108	0.81	-0.2
4,130,038	+		GFF4108	0.81	-1.7
4,130,042	+		GFF4108	0.81	-0.2
4,130,045	+		GFF4108	0.81	-0.7
4,130,050	-		GFF4108	0.82	+1.3
4,130,056	-		GFF4108	0.82	+1.5
4,130,058	+		GFF4108	0.82	-1.7
4,130,088	-		GFF4108	0.84	-1.7
4,130,099	+		GFF4108	0.85	-0.5
4,130,103	+		GFF4108	0.85	-1.4
4,130,103	+		GFF4108	0.85	-1.2
4,130,111	-		GFF4108	0.86	-1.9
4,130,111	-		GFF4108	0.86	+0.7
4,130,111	-		GFF4108	0.86	-0.1
4,130,141	+		GFF4108	0.88	-0.2
4,130,141	-		GFF4108	0.88	-0.5
4,130,148	+		GFF4108	0.88	-0.3
4,130,153	+		GFF4108	0.89	-1.4
4,130,177	+				-2.7
4,130,177	+				+0.1
4,130,185	-				-0.8
4,130,208	+				+0.0
4,130,243	+				-0.7
4,130,243	+				-2.2
4,130,248	+				-1.5
4,130,248	+				-0.0
4,130,248	+				-2.4
4,130,248	+				-0.4
4,130,248	+				+0.6
4,130,248	+				-1.2
4,130,248	+				+0.1
4,130,248	+				-0.4
4,130,248	+				-1.7
4,130,248	+				+0.5
4,130,248	+				+0.2
4,130,248	+				-0.7
4,130,248	+				+0.6
4,130,251	-				+1.4
4,130,251	-				-1.3
4,130,251	-				-1.4
4,130,251	-				-1.4
4,130,253	+				-1.3
4,130,253	+				-0.3
4,130,253	+				-0.0
4,130,253	+				-1.7
4,130,253	+				+0.3
4,130,253	+				-0.4
4,130,256	-				+0.4
4,130,256	-				-0.5
4,130,256	-				+0.2
4,130,256	-				+0.1
4,130,256	-				-0.1
4,130,256	-				-0.4
4,130,256	-				+0.0
4,130,256	-				-0.7
4,130,256	-				-0.1
4,130,256	-				-0.5
4,130,256	-				+0.8
4,130,261	-				-2.4
4,130,261	-				-0.4
4,130,261	-				+0.3
4,130,261	-				-1.2
4,130,261	-				-1.4
4,130,261	-				-2.1
4,130,296	+				+0.2
4,130,303	+				-0.4
4,130,308	+				+0.3
4,130,308	+				+0.6
4,130,308	+				-2.0
4,130,316	-				-0.4
4,130,316	-				+0.6
4,130,316	-				-2.1
4,130,326	+				-0.3
4,130,356	-				-0.3
4,130,390	+				-2.2
4,130,395	+				+0.4
4,130,403	+				-0.2
4,130,403	-				+0.4
4,130,403	-				-0.2
4,130,406	+				-2.2
4,130,436	+				-1.4
4,130,436	+				-0.9
4,130,438	+				+0.9
4,130,442	-				+1.1
4,130,444	+				-0.6
4,130,444	-				-0.8
4,130,444	-				-1.1
4,130,451	+				-0.8
4,130,451	+				+0.3
4,130,452	+				+0.7
4,130,454	-				-0.6
4,130,471	+		GFF4109	0.11	-1.1
4,130,507	+		GFF4109	0.17	-1.8
4,130,511	-		GFF4109	0.17	-1.1
4,130,549	+		GFF4109	0.23	-0.3
4,130,581	+		GFF4109	0.29	-0.1
4,130,581	+		GFF4109	0.29	+0.0
4,130,589	-		GFF4109	0.30	-0.5
4,130,595	+		GFF4109	0.31	-0.2
4,130,595	+		GFF4109	0.31	-1.1
4,130,595	-		GFF4109	0.31	+0.3
4,130,595	-		GFF4109	0.31	-0.3
4,130,603	-		GFF4109	0.32	+0.0
4,130,632	+		GFF4109	0.37	-0.6
4,130,632	+		GFF4109	0.37	-0.8
4,130,634	+		GFF4109	0.37	+1.2
4,130,634	+		GFF4109	0.37	+0.5
4,130,636	+		GFF4109	0.38	-0.0
4,130,639	+		GFF4109	0.38	+0.6
4,130,640	-		GFF4109	0.38	+1.4
4,130,640	-		GFF4109	0.38	-0.8
4,130,640	-		GFF4109	0.38	-1.2
4,130,640	-		GFF4109	0.38	-0.1
4,130,642	-		GFF4109	0.39	-1.7
4,130,642	-		GFF4109	0.39	-0.0
4,130,647	-		GFF4109	0.40	-0.2
4,130,647	-		GFF4109	0.40	+0.6
4,130,647	-		GFF4109	0.40	-0.3
4,130,647	-		GFF4109	0.40	-1.8
4,130,662	+		GFF4109	0.42	-0.8
4,130,664	+		GFF4109	0.42	-0.2
4,130,670	-		GFF4109	0.43	-0.1
4,130,672	-		GFF4109	0.44	-1.5
4,130,699	+		GFF4109	0.48	-2.2
4,130,699	+		GFF4109	0.48	-0.5
4,130,699	+		GFF4109	0.48	-1.5
4,130,699	+		GFF4109	0.48	-0.5
4,130,699	+		GFF4109	0.48	-0.7
4,130,700	-		GFF4109	0.48	+0.3
4,130,707	-		GFF4109	0.50	-0.5
4,130,707	-		GFF4109	0.50	+0.3
4,130,714	+		GFF4109	0.51	+0.2
4,130,716	+		GFF4109	0.51	-1.5
4,130,722	-		GFF4109	0.52	-0.9
4,130,722	-		GFF4109	0.52	-1.4
4,130,726	+		GFF4109	0.53	-0.2
4,130,732	+		GFF4109	0.54	-0.5
4,130,737	+		GFF4109	0.54	-1.7
4,130,777	+		GFF4109	0.61	+0.8
4,130,777	+		GFF4109	0.61	+1.1
4,130,777	+		GFF4109	0.61	-0.8
4,130,785	-		GFF4109	0.62	+0.1
4,130,785	-		GFF4109	0.62	+0.6
4,130,801	+		GFF4109	0.65	+0.6
4,130,812	+		GFF4109	0.67	-0.1
4,130,825	-		GFF4109	0.69	+0.0
4,130,867	+		GFF4109	0.76	+0.7
4,130,874	+		GFF4109	0.77	-1.2
4,130,882	-		GFF4109	0.78	+0.6
4,130,885	+		GFF4109	0.79	+0.1
4,130,885	+		GFF4109	0.79	-0.6
4,130,895	+		GFF4109	0.81	-0.3
4,130,954	+				-0.3
4,130,954	+				-0.3
4,130,959	+				+0.7
4,130,959	+				-0.1
4,130,959	+				-1.6
4,130,959	+				+0.1
4,130,967	-				-0.6
4,130,967	-				+1.4
4,131,032	+				+0.0
4,131,096	+				-0.1
4,131,096	+				+1.4
4,131,096	+				-1.2
4,131,096	+				-1.2
4,131,096	+				+0.2
4,131,096	+				-1.5
4,131,096	+				-0.3
4,131,096	+				-2.0
4,131,096	+				-1.7
4,131,099	-				-2.1
4,131,104	-				-1.1
4,131,104	-				-2.1
4,131,104	-				-0.8
4,131,104	-				-0.7
4,131,104	-				-0.5
4,131,104	-				-0.2
4,131,104	-				-0.9
4,131,104	-				-1.0
4,131,104	-				-0.8
4,131,104	-				+0.2
4,131,104	-				+0.5
4,131,104	-				-0.3
4,131,108	-				-1.4
4,131,110	+				-0.6
4,131,113	-				+1.4
4,131,151	+				-0.2
4,131,155	-				+0.9
4,131,157	+				-1.0
4,131,157	-				+1.2
4,131,157	-				-2.1
4,131,175	-				-1.7
4,131,182	-		GFF4110	0.10	+0.6
4,131,183	+		GFF4110	0.10	-0.0
4,131,183	+		GFF4110	0.10	+0.7
4,131,188	+		GFF4110	0.11	-2.2
4,131,189	+		GFF4110	0.11	-1.4
4,131,191	-		GFF4110	0.11	-0.8
4,131,194	+		GFF4110	0.11	-0.5
4,131,194	+		GFF4110	0.11	-0.9
4,131,194	+		GFF4110	0.11	+0.1
4,131,196	-		GFF4110	0.11	-0.9
4,131,196	-		GFF4110	0.11	-0.5
4,131,196	-		GFF4110	0.11	-0.3
4,131,199	+		GFF4110	0.12	+0.7
4,131,202	-		GFF4110	0.12	+1.3
4,131,202	-		GFF4110	0.12	-0.6
4,131,202	-		GFF4110	0.12	+0.2
4,131,207	-		GFF4110	0.12	-1.4
4,131,207	-		GFF4110	0.12	-0.6
4,131,248	+		GFF4110	0.16	+1.0
4,131,248	+		GFF4110	0.16	+0.5
4,131,255	+		GFF4110	0.16	+0.5
4,131,255	+		GFF4110	0.16	+0.2
4,131,255	+		GFF4110	0.16	-1.1
4,131,255	+		GFF4110	0.16	+1.0
4,131,255	+		GFF4110	0.16	-1.2
4,131,255	+		GFF4110	0.16	+0.2
4,131,255	+		GFF4110	0.16	-1.5
4,131,255	+		GFF4110	0.16	+0.3
4,131,255	+		GFF4110	0.16	-0.6
4,131,255	+		GFF4110	0.16	-0.2
4,131,255	+		GFF4110	0.16	+0.7
4,131,255	+		GFF4110	0.16	+0.1
4,131,255	+		GFF4110	0.16	-1.1
4,131,255	+		GFF4110	0.16	-1.2
4,131,255	+		GFF4110	0.16	-0.3
4,131,255	+		GFF4110	0.16	+0.4
4,131,255	+		GFF4110	0.16	-0.3
4,131,255	+		GFF4110	0.16	-0.4
4,131,255	+		GFF4110	0.16	+1.0
4,131,255	+		GFF4110	0.16	-0.8
4,131,255	+		GFF4110	0.16	-2.4
4,131,256	-		GFF4110	0.16	-0.5
4,131,263	-		GFF4110	0.17	-0.0
4,131,263	-		GFF4110	0.17	-0.3
4,131,263	-		GFF4110	0.17	-0.3
4,131,263	-		GFF4110	0.17	-1.0
4,131,263	-		GFF4110	0.17	+0.7
4,131,263	-		GFF4110	0.17	+0.4
4,131,263	-		GFF4110	0.17	+0.2
4,131,263	-		GFF4110	0.17	-0.1
4,131,263	-		GFF4110	0.17	-0.3
4,131,263	-		GFF4110	0.17	-0.6
4,131,263	-		GFF4110	0.17	+0.0
4,131,263	-		GFF4110	0.17	-0.4
4,131,263	-		GFF4110	0.17	+1.0
4,131,263	-		GFF4110	0.17	-1.3
4,131,263	-		GFF4110	0.17	+0.7
4,131,263	-		GFF4110	0.17	-0.3
4,131,263	-		GFF4110	0.17	+0.2
4,131,263	-		GFF4110	0.17	-1.5
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