Strain Fitness in Sphingobium sp. HT1-2 around GFF4081

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,092,295	-		GFF4080	0.48	+1.4
4,092,313	+		GFF4080	0.49	-0.4
4,092,313	-		GFF4080	0.49	+0.2
4,092,340	+		GFF4080	0.50	+0.2
4,092,348	-		GFF4080	0.51	+0.9
4,092,354	+		GFF4080	0.51	-1.5
4,092,376	+		GFF4080	0.52	-1.5
4,092,379	-		GFF4080	0.53	-1.3
4,092,434	+		GFF4080	0.56	-1.2
4,092,438	+		GFF4080	0.56	-0.3
4,092,438	+		GFF4080	0.56	+0.6
4,092,438	+		GFF4080	0.56	+0.0
4,092,464	+		GFF4080	0.57	+0.7
4,092,472	-		GFF4080	0.58	+0.4
4,092,476	+		GFF4080	0.58	-0.6
4,092,476	+		GFF4080	0.58	+0.8
4,092,505	+		GFF4080	0.60	-0.5
4,092,505	+		GFF4080	0.60	-0.9
4,092,505	+		GFF4080	0.60	-0.6
4,092,505	+		GFF4080	0.60	+0.3
4,092,505	+		GFF4080	0.60	-2.5
4,092,505	+		GFF4080	0.60	-0.3
4,092,508	-		GFF4080	0.60	+0.4
4,092,508	-		GFF4080	0.60	+1.2
4,092,509	+		GFF4080	0.60	-0.7
4,092,513	-		GFF4080	0.60	-0.2
4,092,513	-		GFF4080	0.60	-1.5
4,092,513	-		GFF4080	0.60	-1.3
4,092,513	-		GFF4080	0.60	-1.0
4,092,538	+		GFF4080	0.61	-0.0
4,092,542	+		GFF4080	0.62	-0.7
4,092,550	-		GFF4080	0.62	-0.4
4,092,587	+		GFF4080	0.64	-0.2
4,092,596	-		GFF4080	0.65	-0.5
4,092,596	-		GFF4080	0.65	+0.5
4,092,606	-		GFF4080	0.65	-0.7
4,092,608	+		GFF4080	0.65	+0.1
4,092,635	+		GFF4080	0.67	-0.6
4,092,641	+		GFF4080	0.67	-2.1
4,092,641	+		GFF4080	0.67	-0.9
4,092,641	+		GFF4080	0.67	+0.4
4,092,641	+		GFF4080	0.67	+1.4
4,092,649	-		GFF4080	0.68	+0.2
4,092,649	-		GFF4080	0.68	-1.0
4,092,649	-		GFF4080	0.68	-2.1
4,092,649	-		GFF4080	0.68	+0.7
4,092,649	-		GFF4080	0.68	-0.6
4,092,653	+		GFF4080	0.68	-1.5
4,092,653	+		GFF4080	0.68	+0.1
4,092,653	+		GFF4080	0.68	-0.6
4,092,661	-		GFF4080	0.68	+0.1
4,092,661	-		GFF4080	0.68	+0.2
4,092,703	+		GFF4080	0.71	+0.6
4,092,725	-		GFF4080	0.72	-0.0
4,092,725	-		GFF4080	0.72	-0.2
4,092,746	+		GFF4080	0.73	+1.4
4,092,746	-		GFF4080	0.73	+0.7
4,092,762	+		GFF4080	0.74	+0.8
4,092,762	-		GFF4080	0.74	-1.9
4,092,783	+		GFF4080	0.75	-1.6
4,092,783	+		GFF4080	0.75	-3.0
4,092,785	+		GFF4080	0.75	-2.2
4,092,798	+		GFF4080	0.76	-1.3
4,092,798	+		GFF4080	0.76	+0.9
4,092,806	-		GFF4080	0.77	+0.5
4,092,806	-		GFF4080	0.77	-0.2
4,092,864	-		GFF4080	0.80	-0.4
4,092,865	+		GFF4080	0.80	-0.0
4,092,868	-		GFF4080	0.80	-0.7
4,092,906	-		GFF4080	0.82	-1.5
4,092,920	-		GFF4080	0.83	+0.2
4,092,921	+		GFF4080	0.83	+0.5
4,092,949	-		GFF4080	0.85	-2.0
4,092,956	+		GFF4080	0.85	+0.8
4,092,958	-		GFF4080	0.85	-0.8
4,092,977	-		GFF4080	0.86	-1.6
4,092,980	+		GFF4080	0.86	-0.6
4,092,982	-		GFF4080	0.86	-0.1
4,092,988	+		GFF4080	0.87	-0.1
4,092,998	+		GFF4080	0.87	-0.1
4,092,998	+		GFF4080	0.87	+0.6
4,093,003	+		GFF4080	0.88	-0.2
4,093,003	+		GFF4080	0.88	-0.8
4,093,006	-		GFF4080	0.88	-0.3
4,093,011	-		GFF4080	0.88	-2.1
4,093,011	-		GFF4080	0.88	+0.5
4,093,011	-		GFF4080	0.88	-0.8
4,093,011	-		GFF4080	0.88	+1.2
4,093,011	-		GFF4080	0.88	-1.0
4,093,018	+		GFF4080	0.88	-0.1
4,093,018	+		GFF4080	0.88	+0.1
4,093,019	+		GFF4080	0.88	+0.5
4,093,026	-		GFF4080	0.89	-0.3
4,093,026	-		GFF4080	0.89	+0.3
4,093,026	-		GFF4080	0.89	-1.6
4,093,034	-		GFF4080	0.89	-0.6
4,093,039	-		GFF4080	0.90	-0.8
4,093,090	+				+0.5
4,093,093	-				-0.6
4,093,093	-				-1.2
4,093,098	+				+0.6
4,093,113	+				-0.8
4,093,151	+				+0.3
4,093,159	-				+0.9
4,093,166	+				-2.7
4,093,186	+				-0.6
4,093,186	+				+0.2
4,093,186	+				-0.7
4,093,194	-				+0.2
4,093,194	-				-0.3
4,093,204	+				-1.6
4,093,205	+				-0.6
4,093,212	+				-0.2
4,093,212	+				-0.1
4,093,212	+				-1.4
4,093,212	+				-0.1
4,093,212	+				-0.4
4,093,212	+				+0.1
4,093,212	+				-0.9
4,093,212	+				-0.5
4,093,212	+				-0.6
4,093,212	+				-0.3
4,093,213	-				-0.3
4,093,217	+				+0.5
4,093,219	+				-1.9
4,093,220	-				-0.8
4,093,220	-				-3.4
4,093,220	-				-0.2
4,093,220	-				-1.6
4,093,220	-				-1.4
4,093,220	-				+0.2
4,093,220	-				-0.4
4,093,220	-				-0.5
4,093,220	-				+0.2
4,093,220	-				-0.3
4,093,226	+				-1.9
4,093,226	+				-2.4
4,093,226	+				+0.1
4,093,226	+				+0.3
4,093,234	-				-1.6
4,093,234	-				-1.2
4,093,236	+				-2.0
4,093,236	+				+0.2
4,093,239	-				+0.8
4,093,239	-				-1.5
4,093,244	-				-2.6
4,093,244	-				-0.6
4,093,244	-				-1.4
4,093,260	+				+0.2
4,093,287	-				-0.3
4,093,288	+				-0.4
4,093,302	-				-0.5
4,093,335	+				-0.2
4,093,343	-				+1.0
4,093,354	+				-0.2
4,093,369	+		GFF4081	0.11	+0.3
4,093,369	+		GFF4081	0.11	+0.3
4,093,369	+		GFF4081	0.11	-0.8
4,093,377	-		GFF4081	0.12	-1.9
4,093,377	-		GFF4081	0.12	-0.6
4,093,448	+		GFF4081	0.22	+0.2
4,093,448	+		GFF4081	0.22	-0.5
4,093,452	-		GFF4081	0.23	-1.9
4,093,456	-		GFF4081	0.23	-1.5
4,093,456	-		GFF4081	0.23	+0.6
4,093,494	+		GFF4081	0.28	-0.4
4,093,494	+		GFF4081	0.28	-3.2
4,093,494	+		GFF4081	0.28	-0.3
4,093,494	+		GFF4081	0.28	-2.0
4,093,502	-		GFF4081	0.30	+1.0
4,093,502	-		GFF4081	0.30	-1.5
4,093,502	-		GFF4081	0.30	-0.0
4,093,533	+		GFF4081	0.34	-0.2
4,093,533	+		GFF4081	0.34	-2.1
4,093,533	+		GFF4081	0.34	-0.8
4,093,533	+		GFF4081	0.34	+0.8
4,093,533	+		GFF4081	0.34	-0.2
4,093,541	-		GFF4081	0.35	-0.7
4,093,541	-		GFF4081	0.35	+0.3
4,093,541	-		GFF4081	0.35	-0.6
4,093,541	-		GFF4081	0.35	-0.2
4,093,581	-		GFF4081	0.41	-1.4
4,093,587	+		GFF4081	0.41	-0.0
4,093,587	+		GFF4081	0.41	+0.7
4,093,587	+		GFF4081	0.41	+0.5
4,093,595	-		GFF4081	0.43	-1.6
4,093,595	-		GFF4081	0.43	-1.1
4,093,603	+		GFF4081	0.44	+0.2
4,093,619	+		GFF4081	0.46	-0.1
4,093,639	+		GFF4081	0.49	-0.9
4,093,639	+		GFF4081	0.49	-1.6
4,093,644	+		GFF4081	0.49	-0.2
4,093,644	+		GFF4081	0.49	+0.7
4,093,644	+		GFF4081	0.49	+0.1
4,093,647	-		GFF4081	0.50	+1.8
4,093,647	-		GFF4081	0.50	-2.4
4,093,652	-		GFF4081	0.51	-0.8
4,093,652	-		GFF4081	0.51	+0.2
4,093,661	+		GFF4081	0.52	-1.4
4,093,662	-		GFF4081	0.52	+0.4
4,093,666	+		GFF4081	0.53	-1.2
4,093,667	-		GFF4081	0.53	+0.8
4,093,728	+		GFF4081	0.61	+1.3
4,093,728	+		GFF4081	0.61	+0.8
4,093,736	-		GFF4081	0.62	+1.3
4,093,756	+		GFF4081	0.65	-0.8
4,093,761	+		GFF4081	0.66	-0.5
4,093,761	+		GFF4081	0.66	+1.4
4,093,761	+		GFF4081	0.66	-1.3
4,093,761	+		GFF4081	0.66	+0.3
4,093,764	-		GFF4081	0.66	-0.8
4,093,764	-		GFF4081	0.66	-0.7
4,093,764	-		GFF4081	0.66	+1.4
4,093,764	-		GFF4081	0.66	+0.2
4,093,769	-		GFF4081	0.67	-0.2
4,093,769	-		GFF4081	0.67	+0.1
4,093,774	+		GFF4081	0.68	-0.0
4,093,774	+		GFF4081	0.68	-1.0
4,093,774	+		GFF4081	0.68	+0.1
4,093,776	-		GFF4081	0.68	+0.8
4,093,782	-		GFF4081	0.69	+0.8
4,093,836	+		GFF4081	0.76	-0.5
4,093,836	+		GFF4081	0.76	-0.3
4,093,844	-		GFF4081	0.77	-1.4
4,093,844	-		GFF4081	0.77	+0.7
4,093,860	+		GFF4081	0.80	-0.3
4,093,860	+		GFF4081	0.80	-0.3
4,093,865	+		GFF4081	0.80	+0.2
4,093,865	+		GFF4081	0.80	-0.5
4,093,865	+		GFF4081	0.80	-1.3
4,093,865	+		GFF4081	0.80	+0.6
4,093,868	-		GFF4081	0.81	-1.5
4,093,873	-		GFF4081	0.82	-0.4
4,093,873	-		GFF4081	0.82	-1.3
4,093,873	-		GFF4081	0.82	+0.2
4,093,873	-		GFF4081	0.82	-1.8
4,093,896	+		GFF4081	0.85	+1.1
4,093,919	+		GFF4081	0.88	+0.6
4,093,919	+		GFF4081	0.88	-0.6
4,093,919	+		GFF4081	0.88	-0.3
4,093,927	-		GFF4081	0.89	-1.4
4,093,927	-		GFF4081	0.89	-0.0
4,093,938	+				-2.8
4,093,938	+				+0.6
4,093,938	+				+0.0
4,093,946	-				-0.2
4,093,946	-				+0.4
4,093,946	-				-1.2
4,093,946	-				-2.6
4,093,961	-				-0.4
4,093,961	-				+0.1
4,094,004	-				-0.5
4,094,004	-				-0.2
4,094,006	+				-0.2
4,094,026	+				-0.1
4,094,026	+				-0.2
4,094,034	-				+0.6
4,094,048	+				-0.2
4,094,056	-				+0.9
4,094,067	+				-1.5
4,094,067	+				+0.6
4,094,067	+				-0.2
4,094,067	+				-0.4
4,094,075	-				-1.3
4,094,082	-				-0.2
4,094,103	-		GFF4082	0.11	-1.0
4,094,118	+		GFF4082	0.14	+0.1
4,094,167	-		GFF4082	0.23	+1.3
4,094,184	+		GFF4082	0.26	-0.4
4,094,184	+		GFF4082	0.26	+0.7
4,094,184	+		GFF4082	0.26	-0.2
4,094,187	-		GFF4082	0.26	+0.4
4,094,202	+		GFF4082	0.29	-1.8
4,094,209	+		GFF4082	0.30	+0.2
4,094,210	-		GFF4082	0.30	-0.4
4,094,226	-		GFF4082	0.33	+0.6
4,094,249	+		GFF4082	0.38	+0.3
4,094,249	+		GFF4082	0.38	+0.3
4,094,254	+		GFF4082	0.38	-0.2
4,094,267	-		GFF4082	0.41	+0.5
4,094,272	-		GFF4082	0.42	+0.5
4,094,281	+		GFF4082	0.43	+0.1
4,094,282	-		GFF4082	0.44	+0.3
4,094,282	-		GFF4082	0.44	-1.0
4,094,319	+		GFF4082	0.50	+0.1
4,094,353	+		GFF4082	0.57	-0.5
4,094,358	+		GFF4082	0.58	+0.2
4,094,358	+		GFF4082	0.58	+0.9
4,094,368	+		GFF4082	0.59	-2.1
4,094,368	+		GFF4082	0.59	-0.0
4,094,368	+		GFF4082	0.59	+1.0
4,094,368	+		GFF4082	0.59	+1.2
4,094,371	-		GFF4082	0.60	-0.7
4,094,376	-		GFF4082	0.61	-0.7
4,094,376	-		GFF4082	0.61	-0.1
4,094,376	-		GFF4082	0.61	+0.4
4,094,385	+		GFF4082	0.62	-1.3
4,094,392	+		GFF4082	0.64	-0.1
4,094,393	-		GFF4082	0.64	+0.2
4,094,393	-		GFF4082	0.64	+0.6
4,094,397	+		GFF4082	0.65	+0.7
4,094,397	+		GFF4082	0.65	-1.1
4,094,397	+		GFF4082	0.65	-2.9
4,094,404	+		GFF4082	0.66	+0.1
4,094,405	-		GFF4082	0.66	+0.6
4,094,405	-		GFF4082	0.66	-1.9
4,094,405	-		GFF4082	0.66	-0.4
4,094,405	-		GFF4082	0.66	+0.6
4,094,405	-		GFF4082	0.66	+0.4
4,094,424	+		GFF4082	0.70	+0.1
4,094,431	+		GFF4082	0.71	+1.3
4,094,432	-		GFF4082	0.71	+0.5
4,094,432	-		GFF4082	0.71	-1.6
4,094,432	-		GFF4082	0.71	+0.3
4,094,432	-		GFF4082	0.71	+0.6
4,094,432	-		GFF4082	0.71	-1.3
4,094,432	-		GFF4082	0.71	-1.9
4,094,432	-		GFF4082	0.71	-0.6
4,094,432	-		GFF4082	0.71	-0.5
4,094,433	-		GFF4082	0.71	-0.3
4,094,438	-		GFF4082	0.72	-0.7
4,094,459	+		GFF4082	0.76	+0.3
4,094,482	-		GFF4082	0.80	-0.3
4,094,499	+		GFF4082	0.83	+1.5
4,094,499	+		GFF4082	0.83	+0.1
4,094,507	-		GFF4082	0.85	-0.6
4,094,507	-		GFF4082	0.85	-0.3
4,094,612	-				-0.7
4,094,625	+				-1.6
4,094,630	+				-0.1
4,094,633	-				-1.0
4,094,633	-				+0.9
4,094,641	+				+0.8
4,094,642	+				-0.6
4,094,642	+				-0.2
4,094,649	-				-0.1
4,094,651	+				+1.6
4,094,686	-				-0.3
4,094,696	+				+0.8
4,094,704	-				-0.1
4,094,715	+				-0.1
4,094,726	-				+0.1
4,094,726	-				+0.2
4,094,726	-				+0.2
4,094,744	-				-2.3
4,094,755	+				-0.5
4,094,755	+				+0.1
4,094,755	+				+0.4
4,094,755	+				+0.3
4,094,763	-				-1.9
4,094,763	-				-1.4
4,094,763	-				-1.4
4,094,763	-				-0.8
4,094,763	-				-0.6
4,094,847	-		GFF4083	0.12	-0.8
4,094,883	+		GFF4083	0.15	-1.2
4,094,885	+		GFF4083	0.15	-0.9
4,094,891	-		GFF4083	0.15	+0.5
4,094,895	-		GFF4083	0.16	+0.8
4,094,911	+		GFF4083	0.17	+1.3
4,094,930	+		GFF4083	0.18	+0.1
4,094,930	+		GFF4083	0.18	-1.8
4,094,930	+		GFF4083	0.18	-0.1
4,094,930	+		GFF4083	0.18	-2.1
4,094,938	-		GFF4083	0.19	+0.2
4,094,938	-		GFF4083	0.19	+0.2
4,094,945	-		GFF4083	0.19	+0.5
4,094,949	+		GFF4083	0.20	-0.8
4,094,949	+		GFF4083	0.20	-0.5
4,094,949	+		GFF4083	0.20	+0.7
4,094,949	+		GFF4083	0.20	-0.5
4,094,952	-		GFF4083	0.20	-0.6
4,094,952	-		GFF4083	0.20	+0.9
4,094,957	-		GFF4083	0.20	+0.7
4,094,957	-		GFF4083	0.20	+1.2
4,094,980	+		GFF4083	0.22	-0.7
4,094,985	+		GFF4083	0.22	-1.5
4,094,991	+		GFF4083	0.23	-1.1
4,094,991	+		GFF4083	0.23	-0.1
4,094,992	-		GFF4083	0.23	+0.1
4,094,994	-		GFF4083	0.23	-1.0