Strain Fitness in Sphingobium sp. HT1-2 around GFF4062

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,076,951	-				-1.4
4,076,986	-				-3.0
4,077,082	+				+0.3
4,077,100	-				-1.1
4,077,100	-				-0.1
4,077,124	+				-1.6
4,077,170	-		GFF4062	0.14	-0.3
4,077,217	-		GFF4062	0.19	+0.7
4,077,228	-		GFF4062	0.20	+1.7
4,077,248	+		GFF4062	0.22	+0.5
4,077,263	+		GFF4062	0.23	+1.7
4,077,263	+		GFF4062	0.23	-1.8
4,077,271	-		GFF4062	0.24	+0.7
4,077,331	-		GFF4062	0.30	-1.1
4,077,343	-		GFF4062	0.32	+0.8
4,077,354	-		GFF4062	0.33	+1.2
4,077,386	-		GFF4062	0.36	+0.1
4,077,396	+		GFF4062	0.37	+0.7
4,077,396	+		GFF4062	0.37	+0.4
4,077,404	-		GFF4062	0.38	+1.2
4,077,404	-		GFF4062	0.38	-2.1
4,077,404	-		GFF4062	0.38	+1.4
4,077,404	-		GFF4062	0.38	+1.3
4,077,404	-		GFF4062	0.38	+0.4
4,077,427	+		GFF4062	0.41	+0.2
4,077,449	+		GFF4062	0.43	+0.6
4,077,465	+		GFF4062	0.45	-2.1
4,077,465	+		GFF4062	0.45	+0.5
4,077,473	-		GFF4062	0.45	+0.5
4,077,473	-		GFF4062	0.45	-0.2
4,077,473	-		GFF4062	0.45	+1.6
4,077,473	-		GFF4062	0.45	-0.5
4,077,473	-		GFF4062	0.45	+0.9
4,077,483	-		GFF4062	0.46	+0.1
4,077,489	+		GFF4062	0.47	-1.5
4,077,497	-		GFF4062	0.48	+0.4
4,077,547	+		GFF4062	0.53	-0.0
4,077,547	+		GFF4062	0.53	+0.3
4,077,560	-		GFF4062	0.55	+0.7
4,077,624	-		GFF4062	0.61	-0.9
4,077,639	+		GFF4062	0.63	+1.1
4,077,639	+		GFF4062	0.63	+0.3
4,077,639	+		GFF4062	0.63	-0.3
4,077,647	-		GFF4062	0.64	+1.4
4,077,647	-		GFF4062	0.64	-0.6
4,077,681	+		GFF4062	0.67	+0.2
4,077,696	+		GFF4062	0.69	-0.0
4,077,704	-		GFF4062	0.70	-1.5
4,077,706	-		GFF4062	0.70	+1.7
4,077,744	+		GFF4062	0.74	+0.3
4,077,772	+		GFF4062	0.77	+1.2
4,077,787	+		GFF4062	0.78	+0.7
4,077,790	-		GFF4062	0.79	-1.5
4,077,795	+		GFF4062	0.79	-0.3
4,077,795	-		GFF4062	0.79	-0.2
4,077,803	-		GFF4062	0.80	-0.3
4,077,803	-		GFF4062	0.80	-0.4
4,077,811	+		GFF4062	0.81	+1.5
4,077,876	+		GFF4062	0.88	+1.5
4,077,876	+		GFF4062	0.88	+1.3
4,077,876	+		GFF4062	0.88	+0.1
4,077,884	-		GFF4062	0.89	-0.4
4,077,884	-		GFF4062	0.89	+0.9
4,077,919	+				+0.0
4,077,932	+				-1.6
4,077,941	+				+0.8
4,077,947	+				+1.3
4,077,949	-				-0.3
4,077,981	+				-1.1
4,077,987	-				-2.3
4,077,993	+				-0.1
4,078,039	+				-1.4
4,078,056	+		GFF4063	0.12	-0.9
4,078,064	-		GFF4063	0.14	-1.4
4,078,077	+		GFF4063	0.17	+1.5
4,078,077	+		GFF4063	0.17	-0.3
4,078,080	-		GFF4063	0.18	-0.2
4,078,086	-		GFF4063	0.19	-1.9
4,078,091	+		GFF4063	0.20	-0.1
4,078,110	+		GFF4063	0.25	-2.8
4,078,115	+		GFF4063	0.26	-0.5
4,078,118	-		GFF4063	0.27	+0.3
4,078,118	-		GFF4063	0.27	-2.0
4,078,120	+		GFF4063	0.28	-2.6
4,078,120	+		GFF4063	0.28	+0.0
4,078,128	-		GFF4063	0.30	+0.0
4,078,128	-		GFF4063	0.30	-2.1
4,078,134	-		GFF4063	0.31	+0.0
4,078,146	+		GFF4063	0.34	+0.9
4,078,180	+		GFF4063	0.43	-1.6
4,078,181	+		GFF4063	0.43	-1.6
4,078,203	-		GFF4063	0.48	-0.3
4,078,207	+		GFF4063	0.49	-0.8
4,078,225	+		GFF4063	0.54	-1.8
4,078,225	+		GFF4063	0.54	-0.5
4,078,227	+		GFF4063	0.54	-1.7
4,078,248	+		GFF4063	0.59	-0.0
4,078,248	+		GFF4063	0.59	-0.6
4,078,249	-		GFF4063	0.60	-1.4
4,078,256	-		GFF4063	0.61	-0.7
4,078,258	-		GFF4063	0.62	-0.2
4,078,266	-		GFF4063	0.64	-2.6
4,078,268	-		GFF4063	0.64	-0.3
4,078,273	+		GFF4063	0.66	-0.1
4,078,273	+		GFF4063	0.66	-2.3
4,078,273	+		GFF4063	0.66	-1.6
4,078,284	+		GFF4063	0.68	-0.1
4,078,284	+		GFF4063	0.68	-1.4
4,078,284	+		GFF4063	0.68	-0.5
4,078,287	-		GFF4063	0.69	-0.1
4,078,287	-		GFF4063	0.69	+1.2
4,078,289	+		GFF4063	0.70	-0.7
4,078,289	+		GFF4063	0.70	-3.1
4,078,292	-		GFF4063	0.70	-0.6
4,078,292	-		GFF4063	0.70	-0.3
4,078,292	-		GFF4063	0.70	-0.4
4,078,292	-		GFF4063	0.70	-0.7
4,078,292	-		GFF4063	0.70	-2.9
4,078,294	+		GFF4063	0.71	+1.3
4,078,294	+		GFF4063	0.71	-0.4
4,078,294	+		GFF4063	0.71	-1.5
4,078,302	-		GFF4063	0.73	-0.3
4,078,302	-		GFF4063	0.73	-0.1
4,078,311	+		GFF4063	0.75	-0.1
4,078,321	-		GFF4063	0.78	-2.5
4,078,328	+		GFF4063	0.79	-1.5
4,078,336	-		GFF4063	0.81	+0.7
4,078,336	-		GFF4063	0.81	-0.3
4,078,340	+		GFF4063	0.82	-1.8
4,078,365	+		GFF4063	0.89	-0.7
4,078,372	+				-0.9
4,078,372	+				-1.1
4,078,372	-				-1.1
4,078,373	-				+0.4
4,078,380	-				-0.5
4,078,382	+				-0.3
4,078,400	+				+0.9
4,078,400	+				+0.1
4,078,400	+				-0.8
4,078,400	+				+0.2
4,078,408	-				+0.3
4,078,408	-				-0.2
4,078,408	-				-0.7
4,078,418	-				+0.2
4,078,426	-				+1.1
4,078,454	-				-0.1
4,078,490	+				-0.5
4,078,498	-				-1.0
4,078,498	-				-1.2
4,078,500	+				+0.9
4,078,514	-				+0.3
4,078,526	+				-1.8
4,078,540	+				+0.8
4,078,540	+				-0.7
4,078,540	+				+0.9
4,078,543	-				-0.2
4,078,548	-				+1.1
4,078,548	-				+0.1
4,078,552	+				-1.5
4,078,553	-				-0.0
4,078,557	+				-0.8
4,078,557	+				+0.1
4,078,557	+				-1.9
4,078,557	+				+0.6
4,078,557	+				-1.9
4,078,557	+				+0.7
4,078,557	+				-0.4
4,078,560	-				+0.3
4,078,562	+				-0.0
4,078,565	+				+1.3
4,078,565	-				-0.7
4,078,565	-				-1.6
4,078,565	-				+0.1
4,078,565	-				-0.9
4,078,565	-				+0.9
4,078,565	-				+0.7
4,078,565	-				-0.4
4,078,565	-				-0.4
4,078,567	+				+0.6
4,078,567	+				-0.8
4,078,570	-		GFF4064	0.10	+1.4
4,078,570	-		GFF4064	0.10	+1.8
4,078,570	-		GFF4064	0.10	-2.1
4,078,575	-		GFF4064	0.11	-0.5
4,078,575	-		GFF4064	0.11	+1.9
4,078,575	-		GFF4064	0.11	+0.1
4,078,575	-		GFF4064	0.11	-0.4
4,078,590	+		GFF4064	0.13	-1.1
4,078,596	+		GFF4064	0.14	+0.0
4,078,596	+		GFF4064	0.14	-0.8
4,078,596	-		GFF4064	0.14	-1.6
4,078,604	-		GFF4064	0.16	+0.8
4,078,642	-		GFF4064	0.21	+0.4
4,078,652	-		GFF4064	0.23	-1.4
4,078,652	-		GFF4064	0.23	-1.1
4,078,652	-		GFF4064	0.23	+1.6
4,078,652	-		GFF4064	0.23	-0.4
4,078,652	-		GFF4064	0.23	-0.1
4,078,652	-		GFF4064	0.23	-0.3
4,078,657	+		GFF4064	0.24	-0.8
4,078,657	+		GFF4064	0.24	+0.5
4,078,774	-		GFF4064	0.42	-1.4
4,078,792	+		GFF4064	0.44	-1.3
4,078,799	-		GFF4064	0.45	+0.7
4,078,800	-		GFF4064	0.46	+0.4
4,078,809	-		GFF4064	0.47	+0.3
4,078,823	+		GFF4064	0.49	+0.2
4,078,828	+		GFF4064	0.50	-1.2
4,078,836	-		GFF4064	0.51	+0.1
4,078,847	-		GFF4064	0.53	+0.1
4,078,852	+		GFF4064	0.54	-1.5
4,078,852	+		GFF4064	0.54	-1.5
4,078,855	-		GFF4064	0.54	+0.7
4,078,855	-		GFF4064	0.54	+0.1
4,078,860	-		GFF4064	0.55	-0.4
4,078,860	-		GFF4064	0.55	+0.6
4,078,875	-		GFF4064	0.57	+0.4
4,078,880	+		GFF4064	0.58	-0.3
4,078,885	+		GFF4064	0.59	-1.5
4,078,885	+		GFF4064	0.59	-1.0
4,078,893	-		GFF4064	0.60	+1.4
4,078,895	+		GFF4064	0.60	+1.3
4,078,911	+		GFF4064	0.63	+1.3
4,078,959	+		GFF4064	0.70	+0.4
4,078,959	+		GFF4064	0.70	+0.1
4,078,960	+		GFF4064	0.70	+0.9
4,078,960	+		GFF4064	0.70	+0.1
4,078,960	+		GFF4064	0.70	+1.1
4,078,966	+		GFF4064	0.71	+0.1
4,078,966	-		GFF4064	0.71	-0.7
4,078,968	-		GFF4064	0.71	-1.1
4,078,968	-		GFF4064	0.71	-0.0
4,078,968	-		GFF4064	0.71	-1.4
4,078,968	-		GFF4064	0.71	-0.1
4,078,968	-		GFF4064	0.71	-1.9
4,078,977	+		GFF4064	0.73	-0.1
4,078,985	-		GFF4064	0.74	-1.4