Strain Fitness in Sphingobium sp. HT1-2 around GFF4047

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,059,716	+				+0.3
4,059,716	+				-0.2
4,059,726	+				-0.0
4,059,731	+				-2.0
4,059,767	+				-1.9
4,059,773	-				-0.6
4,059,780	+				-1.1
4,059,788	-				-0.4
4,059,806	-				+0.3
4,059,844	+		GFF4046	0.11	+0.8
4,059,852	-		GFF4046	0.12	-0.3
4,059,859	-		GFF4046	0.13	-0.6
4,059,859	-		GFF4046	0.13	+0.4
4,059,859	-		GFF4046	0.13	+0.1
4,059,898	+		GFF4046	0.17	+1.2
4,059,955	+		GFF4046	0.23	+0.3
4,059,961	+		GFF4046	0.23	-1.3
4,060,004	+		GFF4046	0.28	-0.5
4,060,011	+		GFF4046	0.28	+0.3
4,060,011	+		GFF4046	0.28	-0.4
4,060,012	-		GFF4046	0.28	-0.2
4,060,012	-		GFF4046	0.28	-0.9
4,060,014	+		GFF4046	0.29	-2.7
4,060,028	-		GFF4046	0.30	+0.1
4,060,030	+		GFF4046	0.30	+0.1
4,060,030	+		GFF4046	0.30	-0.9
4,060,030	+		GFF4046	0.30	+0.6
4,060,030	+		GFF4046	0.30	+0.3
4,060,030	+		GFF4046	0.30	+0.4
4,060,030	+		GFF4046	0.30	-0.5
4,060,030	+		GFF4046	0.30	+0.6
4,060,038	-		GFF4046	0.31	-0.1
4,060,038	-		GFF4046	0.31	+0.2
4,060,038	-		GFF4046	0.31	+1.2
4,060,038	-		GFF4046	0.31	+0.9
4,060,046	+		GFF4046	0.32	-1.0
4,060,051	+		GFF4046	0.32	+1.1
4,060,051	+		GFF4046	0.32	-0.8
4,060,051	+		GFF4046	0.32	+1.3
4,060,051	+		GFF4046	0.32	-2.7
4,060,051	+		GFF4046	0.32	+0.8
4,060,051	+		GFF4046	0.32	+0.0
4,060,059	-		GFF4046	0.33	-0.0
4,060,059	-		GFF4046	0.33	+0.1
4,060,059	-		GFF4046	0.33	-1.5
4,060,059	-		GFF4046	0.33	-0.8
4,060,059	-		GFF4046	0.33	+0.0
4,060,059	-		GFF4046	0.33	-2.2
4,060,059	-		GFF4046	0.33	-0.6
4,060,059	-		GFF4046	0.33	+1.1
4,060,089	+		GFF4046	0.36	+0.8
4,060,090	+		GFF4046	0.36	-0.8
4,060,128	+		GFF4046	0.40	+0.3
4,060,128	-		GFF4046	0.40	-1.5
4,060,139	-		GFF4046	0.41	-0.7
4,060,189	-		GFF4046	0.46	-0.5
4,060,200	+		GFF4046	0.48	+0.5
4,060,200	+		GFF4046	0.48	+0.5
4,060,200	+		GFF4046	0.48	+1.3
4,060,200	+		GFF4046	0.48	+0.6
4,060,205	+		GFF4046	0.48	-0.2
4,060,205	+		GFF4046	0.48	-0.1
4,060,205	+		GFF4046	0.48	+1.1
4,060,205	+		GFF4046	0.48	+0.3
4,060,205	+		GFF4046	0.48	-1.4
4,060,205	+		GFF4046	0.48	-0.4
4,060,213	-		GFF4046	0.49	+0.0
4,060,213	-		GFF4046	0.49	+0.3
4,060,213	-		GFF4046	0.49	+0.2
4,060,213	-		GFF4046	0.49	-0.4
4,060,213	-		GFF4046	0.49	-1.0
4,060,213	-		GFF4046	0.49	+0.3
4,060,213	-		GFF4046	0.49	-2.5
4,060,217	+		GFF4046	0.49	-1.1
4,060,222	+		GFF4046	0.50	-0.0
4,060,222	+		GFF4046	0.50	-0.5
4,060,223	-		GFF4046	0.50	-0.1
4,060,230	-		GFF4046	0.51	-2.0
4,060,230	-		GFF4046	0.51	-0.1
4,060,230	-		GFF4046	0.51	-0.4
4,060,247	+		GFF4046	0.52	+0.1
4,060,249	-		GFF4046	0.52	+0.6
4,060,255	-		GFF4046	0.53	+0.5
4,060,255	-		GFF4046	0.53	-0.3
4,060,258	+		GFF4046	0.53	-0.7
4,060,258	+		GFF4046	0.53	+0.3
4,060,266	-		GFF4046	0.54	+0.2
4,060,266	-		GFF4046	0.54	-1.4
4,060,266	-		GFF4046	0.54	+0.0
4,060,268	+		GFF4046	0.54	+0.9
4,060,276	-		GFF4046	0.55	-0.0
4,060,277	-		GFF4046	0.55	-0.6
4,060,285	-		GFF4046	0.56	+0.9
4,060,291	+		GFF4046	0.57	+0.4
4,060,293	-		GFF4046	0.57	-0.9
4,060,299	-		GFF4046	0.58	+0.0
4,060,316	+		GFF4046	0.59	-0.0
4,060,327	+		GFF4046	0.60	-0.6
4,060,335	-		GFF4046	0.61	-2.2
4,060,335	-		GFF4046	0.61	+0.9
4,060,342	+		GFF4046	0.62	+0.5
4,060,343	-		GFF4046	0.62	-1.5
4,060,348	+		GFF4046	0.63	-0.2
4,060,349	+		GFF4046	0.63	+1.3
4,060,350	-		GFF4046	0.63	-0.3
4,060,356	-		GFF4046	0.63	+0.7
4,060,374	+		GFF4046	0.65	-0.2
4,060,374	-		GFF4046	0.65	-0.4
4,060,387	-		GFF4046	0.67	-0.2
4,060,406	+		GFF4046	0.69	-3.3
4,060,457	+		GFF4046	0.74	-1.1
4,060,480	+		GFF4046	0.76	+0.2
4,060,505	+		GFF4046	0.79	+1.2
4,060,510	+		GFF4046	0.79	+0.4
4,060,515	-		GFF4046	0.80	-0.1
4,060,518	+		GFF4046	0.80	-0.6
4,060,533	+		GFF4046	0.81	+1.7
4,060,563	+		GFF4046	0.85	+1.1
4,060,563	+		GFF4046	0.85	+1.2
4,060,571	-		GFF4046	0.85	-0.9
4,060,590	-		GFF4046	0.87	+0.1
4,060,597	-		GFF4046	0.88	+0.2
4,060,604	+		GFF4046	0.89	+0.1
4,060,604	+		GFF4046	0.89	+1.4
4,060,604	+		GFF4046	0.89	+0.1
4,060,604	+		GFF4046	0.89	+1.2
4,060,604	+		GFF4046	0.89	+0.2
4,060,604	+		GFF4046	0.89	-0.2
4,060,604	+		GFF4046	0.89	+0.5
4,060,604	+		GFF4046	0.89	+1.0
4,060,610	+		GFF4046	0.89	+0.7
4,060,612	-		GFF4046	0.90	+1.3
4,060,612	-		GFF4046	0.90	+0.6
4,060,612	-		GFF4046	0.90	+0.9
4,060,612	-		GFF4046	0.90	+1.0
4,060,612	-		GFF4046	0.90	+1.2
4,060,612	-		GFF4046	0.90	+0.8
4,060,612	-		GFF4046	0.90	+0.9
4,060,612	-		GFF4046	0.90	+0.6
4,060,618	-				+0.0
4,060,618	-				+1.0
4,060,618	-				+0.9
4,060,627	+				-0.2
4,060,629	-				-0.3
4,060,632	+				-0.3
4,060,632	+				+0.6
4,060,632	+				+1.3
4,060,632	+				+0.7
4,060,640	-				+1.1
4,060,640	-				+0.4
4,060,640	-				+1.1
4,060,640	-				+0.8
4,060,645	+				+0.5
4,060,656	+				+1.0
4,060,657	-				+0.1
4,060,657	-				+1.5
4,060,668	+				+0.5
4,060,668	+				+1.3
4,060,669	+				+0.8
4,060,669	+				-0.3
4,060,677	-				+1.4
4,060,677	-				+0.3
4,060,680	+				-0.2
4,060,688	-				+1.2
4,060,688	-				+1.1
4,060,688	-				+0.9
4,060,694	-				+1.1
4,060,733	-				+0.1
4,060,737	-				-0.4
4,060,737	-				-0.5
4,060,738	-				+0.6
4,060,739	+				-1.8
4,060,739	+				+0.0
4,060,739	+				-0.4
4,060,747	-		GFF4047	0.11	+0.0
4,060,747	-		GFF4047	0.11	+0.1
4,060,747	-		GFF4047	0.11	+1.2
4,060,747	-		GFF4047	0.11	-0.1
4,060,747	-		GFF4047	0.11	-0.6
4,060,747	-		GFF4047	0.11	-0.5
4,060,747	-		GFF4047	0.11	+0.7
4,060,747	-		GFF4047	0.11	-0.0
4,060,747	-		GFF4047	0.11	+0.4
4,060,747	-		GFF4047	0.11	-0.4
4,060,750	+		GFF4047	0.11	-1.8
4,060,759	-		GFF4047	0.13	+0.5
4,060,760	-		GFF4047	0.13	+0.3
4,060,767	+		GFF4047	0.14	+0.3
4,060,792	+		GFF4047	0.18	+1.1
4,060,792	+		GFF4047	0.18	+0.4
4,060,792	+		GFF4047	0.18	-0.6
4,060,792	+		GFF4047	0.18	-0.8
4,060,792	+		GFF4047	0.18	-0.8
4,060,792	+		GFF4047	0.18	+0.7
4,060,792	+		GFF4047	0.18	+0.2
4,060,795	-		GFF4047	0.18	+0.9
4,060,800	-		GFF4047	0.19	+0.3
4,060,800	-		GFF4047	0.19	+1.3
4,060,800	-		GFF4047	0.19	-0.4
4,060,800	-		GFF4047	0.19	-0.8
4,060,800	-		GFF4047	0.19	-0.0
4,060,800	-		GFF4047	0.19	+0.3
4,060,807	+		GFF4047	0.20	-0.3
4,060,824	+		GFF4047	0.23	-0.8
4,060,907	+		GFF4047	0.37	-1.4
4,060,918	+		GFF4047	0.39	-0.2
4,060,970	+		GFF4047	0.47	-2.3
4,060,979	+		GFF4047	0.49	-2.8
4,060,983	+		GFF4047	0.50	-1.3
4,061,036	+		GFF4047	0.58	-0.0
4,061,043	+		GFF4047	0.59	-0.8
4,061,043	-		GFF4047	0.59	+0.3
4,061,044	-		GFF4047	0.60	-0.9
4,061,044	-		GFF4047	0.60	+0.3
4,061,051	-		GFF4047	0.61	-0.2
4,061,063	+		GFF4047	0.63	-1.0
4,061,094	+		GFF4047	0.68	-2.0
4,061,094	+		GFF4047	0.68	-1.1
4,061,094	+		GFF4047	0.68	+0.8
4,061,102	-		GFF4047	0.69	-0.6
4,061,126	-		GFF4047	0.73	-0.5
4,061,131	-		GFF4047	0.74	+0.7
4,061,154	+		GFF4047	0.78	+1.5
4,061,154	+		GFF4047	0.78	+0.1
4,061,154	+		GFF4047	0.78	+1.6
4,061,154	+		GFF4047	0.78	-0.0
4,061,162	-		GFF4047	0.79	+0.9
4,061,162	-		GFF4047	0.79	-1.8
4,061,162	-		GFF4047	0.79	+0.4
4,061,162	-		GFF4047	0.79	-0.5
4,061,178	-		GFF4047	0.82	+0.2
4,061,220	+		GFF4047	0.89	-0.6
4,061,220	+		GFF4047	0.89	+0.2
4,061,220	+		GFF4047	0.89	-1.0
4,061,220	+		GFF4047	0.89	-1.6
4,061,223	-		GFF4047	0.89	+1.0
4,061,228	-				-2.8
4,061,228	-				-0.3
4,061,251	+				+0.1
4,061,251	+				-0.3
4,061,251	+				+1.0
4,061,251	+				+0.4
4,061,251	+				-1.7
4,061,251	+				-2.0
4,061,251	+				-1.1
4,061,259	-				-0.4
4,061,259	-				-0.8
4,061,259	-				+0.6
4,061,259	-				+0.1
4,061,259	-				-0.4
4,061,262	+				+1.3
4,061,268	-				-0.3
4,061,277	+				-1.1
4,061,279	-				+1.0
4,061,281	-				-0.3
4,061,287	-				-0.1
4,061,287	-				+0.7
4,061,291	-				+0.5
4,061,296	-				-1.0
4,061,325	-				-0.0
4,061,373	-				-0.1
4,061,484	-		GFF4048	0.12	+0.2
4,061,505	-		GFF4048	0.22	-2.0
4,061,505	-		GFF4048	0.22	-0.4
4,061,505	-		GFF4048	0.22	+1.3
4,061,505	-		GFF4048	0.22	+1.0
4,061,507	+		GFF4048	0.23	-0.9
4,061,507	+		GFF4048	0.23	-0.4
4,061,507	+		GFF4048	0.23	+0.4
4,061,507	-		GFF4048	0.23	-2.1
4,061,515	-		GFF4048	0.27	-0.8
4,061,517	+		GFF4048	0.28	-0.1
4,061,557	+		GFF4048	0.48	-0.9
4,061,569	+		GFF4048	0.54	+0.7
4,061,569	+		GFF4048	0.54	+0.2
4,061,592	-		GFF4048	0.66	-1.0
4,061,592	-		GFF4048	0.66	+0.6
4,061,610	-		GFF4048	0.75	-0.9
4,061,617	+		GFF4048	0.78	+0.6
4,061,617	+		GFF4048	0.78	-0.5
4,061,617	+		GFF4048	0.78	-0.9
4,061,617	+		GFF4048	0.78	-0.5
4,061,620	-		GFF4048	0.80	+0.2
4,061,621	+		GFF4048	0.80	-0.1
4,061,625	-		GFF4048	0.82	-0.5
4,061,625	-		GFF4048	0.82	-1.1
4,061,641	+				-0.7
4,061,641	+				-0.9
4,061,641	+				+0.2
4,061,641	+				+0.5
4,061,641	+				-0.5
4,061,641	+				+0.6
4,061,641	+				-1.2
4,061,649	-				-0.7
4,061,649	-				-0.2
4,061,656	+				-0.5
4,061,659	+				+0.8
4,061,659	+				-0.4
4,061,661	+				-1.3
4,061,668	-				-0.8
4,061,695	+				-0.5
4,061,695	+				-1.1
4,061,719	-				-1.3
4,061,729	+				+0.9
4,061,865	+				+0.5
4,061,873	-				-0.5
4,061,879	-				-1.3
4,061,935	+				-1.6
4,061,937	+				-1.6
4,061,937	+				+1.3
4,061,937	+				-2.1
4,061,946	+				+0.1
4,061,955	+				+0.3
4,061,963	-				-0.1
4,061,966	+				-0.7
4,062,103	+		GFF4050	0.11	-0.6
4,062,242	+		GFF4050	0.20	-1.9
4,062,242	+		GFF4050	0.20	+0.9
4,062,242	+		GFF4050	0.20	-2.2
4,062,250	-		GFF4050	0.20	-0.8