Strain Fitness in Sphingobium sp. HT1-2 around GFF4029

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,049,043	+				-2.2
4,049,044	+				-0.8
4,049,060	+		GFF4028	0.10	+0.3
4,049,072	-		GFF4028	0.11	+0.4
4,049,074	+		GFF4028	0.12	-0.1
4,049,098	+		GFF4028	0.14	+0.0
4,049,104	-		GFF4028	0.14	+0.7
4,049,106	-		GFF4028	0.14	+0.4
4,049,118	+		GFF4028	0.16	-1.7
4,049,126	-		GFF4028	0.16	-0.8
4,049,134	-		GFF4028	0.17	+0.4
4,049,134	-		GFF4028	0.17	+0.6
4,049,136	+		GFF4028	0.17	-2.6
4,049,154	-		GFF4028	0.19	-0.3
4,049,154	-		GFF4028	0.19	-1.7
4,049,158	-		GFF4028	0.19	+0.2
4,049,160	+		GFF4028	0.19	-1.4
4,049,168	-		GFF4028	0.20	-1.1
4,049,176	-		GFF4028	0.21	+0.8
4,049,185	+		GFF4028	0.22	-0.7
4,049,193	-		GFF4028	0.22	-2.6
4,049,193	-		GFF4028	0.22	-0.0
4,049,222	+		GFF4028	0.25	-2.0
4,049,226	+		GFF4028	0.25	-1.3
4,049,226	+		GFF4028	0.25	+0.5
4,049,230	-		GFF4028	0.26	-1.6
4,049,270	+		GFF4028	0.29	-0.2
4,049,295	-		GFF4028	0.32	-0.3
4,049,315	-		GFF4028	0.34	+0.1
4,049,336	+		GFF4028	0.35	-1.2
4,049,337	-		GFF4028	0.36	-0.5
4,049,339	+		GFF4028	0.36	-0.6
4,049,372	+		GFF4028	0.39	-0.3
4,049,377	+		GFF4028	0.39	-0.4
4,049,383	-		GFF4028	0.40	-0.8
4,049,391	+		GFF4028	0.40	-2.0
4,049,393	-		GFF4028	0.41	-1.6
4,049,399	-		GFF4028	0.41	-1.0
4,049,399	-		GFF4028	0.41	-2.3
4,049,471	+		GFF4028	0.48	+0.1
4,049,471	+		GFF4028	0.48	-0.1
4,049,471	+		GFF4028	0.48	-0.3
4,049,471	+		GFF4028	0.48	-0.6
4,049,492	-		GFF4028	0.50	-0.8
4,049,515	-		GFF4028	0.52	+0.0
4,049,517	+		GFF4028	0.52	-1.8
4,049,517	+		GFF4028	0.52	+0.3
4,049,517	+		GFF4028	0.52	+0.5
4,049,517	+		GFF4028	0.52	-1.5
4,049,519	-		GFF4028	0.52	-1.2
4,049,520	-		GFF4028	0.52	-0.1
4,049,525	-		GFF4028	0.53	+0.2
4,049,525	-		GFF4028	0.53	-0.5
4,049,525	-		GFF4028	0.53	-2.2
4,049,525	-		GFF4028	0.53	-0.4
4,049,525	-		GFF4028	0.53	-2.3
4,049,534	+		GFF4028	0.54	-1.3
4,049,551	+		GFF4028	0.55	-0.0
4,049,556	+		GFF4028	0.56	-1.7
4,049,557	-		GFF4028	0.56	+1.0
4,049,557	-		GFF4028	0.56	-0.9
4,049,557	-		GFF4028	0.56	+0.1
4,049,566	+		GFF4028	0.56	-2.3
4,049,574	+		GFF4028	0.57	-1.2
4,049,574	-		GFF4028	0.57	+0.1
4,049,574	-		GFF4028	0.57	+0.3
4,049,576	-		GFF4028	0.57	-1.4
4,049,576	-		GFF4028	0.57	-0.2
4,049,605	-		GFF4028	0.60	+0.2
4,049,606	-		GFF4028	0.60	+0.2
4,049,606	-		GFF4028	0.60	+0.1
4,049,610	+		GFF4028	0.60	-1.2
4,049,610	+		GFF4028	0.60	-0.8
4,049,611	-		GFF4028	0.61	-0.2
4,049,614	+		GFF4028	0.61	+1.3
4,049,618	-		GFF4028	0.61	-0.8
4,049,620	+		GFF4028	0.61	+0.1
4,049,636	+		GFF4028	0.63	-1.0
4,049,659	-		GFF4028	0.65	-1.4
4,049,678	+		GFF4028	0.67	+0.3
4,049,688	+		GFF4028	0.68	-0.3
4,049,688	+		GFF4028	0.68	+0.7
4,049,688	+		GFF4028	0.68	-0.1
4,049,688	+		GFF4028	0.68	+0.7
4,049,688	+		GFF4028	0.68	-1.3
4,049,688	+		GFF4028	0.68	-0.5
4,049,688	+		GFF4028	0.68	-0.6
4,049,688	+		GFF4028	0.68	+1.3
4,049,696	-		GFF4028	0.68	+0.2
4,049,696	-		GFF4028	0.68	+1.0
4,049,696	-		GFF4028	0.68	-1.4
4,049,696	-		GFF4028	0.68	-2.8
4,049,704	-		GFF4028	0.69	-0.2
4,049,708	-		GFF4028	0.69	-0.0
4,049,719	+		GFF4028	0.70	-2.2
4,049,766	+		GFF4028	0.75	-0.4
4,049,766	+		GFF4028	0.75	-1.6
4,049,766	+		GFF4028	0.75	-1.6
4,049,774	-		GFF4028	0.75	-0.6
4,049,774	-		GFF4028	0.75	+0.7
4,049,774	-		GFF4028	0.75	+0.8
4,049,774	-		GFF4028	0.75	+1.3
4,049,774	-		GFF4028	0.75	-0.6
4,049,775	-		GFF4028	0.76	+0.7
4,049,777	+		GFF4028	0.76	-0.6
4,049,803	+		GFF4028	0.78	+0.9
4,049,803	-		GFF4028	0.78	-1.1
4,049,819	-		GFF4028	0.80	-0.3
4,049,825	+		GFF4028	0.80	-0.5
4,049,841	-		GFF4028	0.82	-0.3
4,049,845	+		GFF4028	0.82	+0.7
4,049,853	-		GFF4028	0.83	+0.0
4,049,853	-		GFF4028	0.83	-0.4
4,049,861	-		GFF4028	0.83	-0.3
4,049,864	+		GFF4028	0.84	+0.0
4,049,872	-		GFF4028	0.84	-0.7
4,049,874	+		GFF4028	0.85	-1.4
4,049,874	+		GFF4028	0.85	+0.7
4,049,877	-		GFF4028	0.85	-0.2
4,049,882	-		GFF4028	0.85	-0.3
4,049,890	+		GFF4028	0.86	-0.4
4,049,898	-		GFF4028	0.87	+0.4
4,049,900	+		GFF4028	0.87	-0.6
4,049,908	-		GFF4028	0.88	+0.1
4,049,920	+		GFF4028	0.89	-0.9
4,049,928	-		GFF4028	0.89	-1.5
4,049,941	+				-0.1
4,049,946	+				-2.3
4,049,949	-				-1.9
4,049,951	+				+0.2
4,049,954	-				-1.8
4,049,957	+				-0.6
4,049,964	+				-1.0
4,049,964	+				-0.7
4,049,964	+				-0.8
4,049,964	+				+0.4
4,049,964	+				-0.5
4,049,964	-				-0.3
4,049,972	-				+0.8
4,049,976	+				-1.0
4,049,976	+				-0.4
4,049,984	-				+0.3
4,049,984	-				+0.1
4,049,986	+				-1.3
4,049,988	+				-0.7
4,049,993	+				-0.5
4,049,993	+				-1.4
4,050,001	-				-1.2
4,050,003	+				-0.4
4,050,022	+				-0.1
4,050,022	+				+0.2
4,050,023	+				-0.0
4,050,030	-				+0.1
4,050,030	-				+0.7
4,050,030	-				-0.1
4,050,030	-				-0.3
4,050,030	-				-0.3
4,050,035	-				-0.3
4,050,035	-				-0.3
4,050,044	+				+0.7
4,050,044	+				-1.0
4,050,052	-				-0.9
4,050,057	+				-0.6
4,050,060	-				+0.4
4,050,065	-				-0.9
4,050,065	-				+0.4
4,050,065	-				-0.2
4,050,070	-				+0.9
4,050,070	-				-0.9
4,050,102	-				-0.7
4,050,125	+				-1.2
4,050,125	+				-1.3
4,050,130	+				-0.4
4,050,144	+				+1.0
4,050,144	+				+0.7
4,050,160	+				-1.0
4,050,189	+		GFF4029	0.12	+0.3
4,050,191	+		GFF4029	0.12	-0.3
4,050,206	-		GFF4029	0.13	-1.3
4,050,210	+		GFF4029	0.13	-0.5
4,050,216	-		GFF4029	0.14	-1.0
4,050,217	+		GFF4029	0.14	-1.6
4,050,217	+		GFF4029	0.14	-0.6
4,050,217	+		GFF4029	0.14	-0.8
4,050,225	-		GFF4029	0.14	-0.5
4,050,230	-		GFF4029	0.15	-1.0
4,050,235	-		GFF4029	0.15	+0.8
4,050,277	+		GFF4029	0.19	-0.5
4,050,277	+		GFF4029	0.19	-0.1
4,050,287	+		GFF4029	0.19	-1.2
4,050,300	-		GFF4029	0.20	+0.7
4,050,308	+		GFF4029	0.21	-0.7
4,050,310	-		GFF4029	0.21	-1.4
4,050,324	-		GFF4029	0.22	-0.4
4,050,351	-		GFF4029	0.24	-1.6
4,050,353	-		GFF4029	0.25	-0.1
4,050,372	+		GFF4029	0.26	-0.2
4,050,389	+		GFF4029	0.27	+0.3
4,050,397	+		GFF4029	0.28	-1.6
4,050,397	+		GFF4029	0.28	+0.0
4,050,405	-		GFF4029	0.29	-0.4
4,050,405	-		GFF4029	0.29	-0.3
4,050,415	-		GFF4029	0.29	-1.5
4,050,415	-		GFF4029	0.29	-1.7
4,050,419	-		GFF4029	0.30	-1.6
4,050,432	+		GFF4029	0.31	+0.5
4,050,440	+		GFF4029	0.31	+0.6
4,050,481	+		GFF4029	0.35	+0.9
4,050,489	-		GFF4029	0.35	-1.9
4,050,500	-		GFF4029	0.36	-0.2
4,050,507	+		GFF4029	0.37	+0.2
4,050,508	+		GFF4029	0.37	-2.0
4,050,508	+		GFF4029	0.37	+0.8
4,050,515	-		GFF4029	0.37	-1.0
4,050,526	+		GFF4029	0.38	-0.3
4,050,546	+		GFF4029	0.40	-0.6
4,050,547	+		GFF4029	0.40	-0.9
4,050,555	-		GFF4029	0.41	-1.4
4,050,563	+		GFF4029	0.41	+1.1
4,050,563	+		GFF4029	0.41	+0.2
4,050,571	+		GFF4029	0.42	-0.6
4,050,579	-		GFF4029	0.42	-2.0
4,050,603	+		GFF4029	0.44	+0.1
4,050,603	+		GFF4029	0.44	-0.6
4,050,611	-		GFF4029	0.45	-0.2
4,050,628	+		GFF4029	0.46	+1.2
4,050,628	+		GFF4029	0.46	+1.1
4,050,628	+		GFF4029	0.46	-0.7
4,050,636	+		GFF4029	0.47	-1.3
4,050,636	-		GFF4029	0.47	+1.3
4,050,636	-		GFF4029	0.47	-1.3
4,050,636	-		GFF4029	0.47	-0.6
4,050,638	+		GFF4029	0.47	-1.2
4,050,644	-		GFF4029	0.48	-0.6
4,050,651	+		GFF4029	0.48	+1.2
4,050,651	+		GFF4029	0.48	-0.9
4,050,654	-		GFF4029	0.48	+0.0
4,050,666	+		GFF4029	0.49	-0.1
4,050,725	-		GFF4029	0.54	-0.6
4,050,737	+		GFF4029	0.55	-0.5
4,050,750	-		GFF4029	0.56	-1.3
4,050,755	-		GFF4029	0.56	-0.3
4,050,765	+		GFF4029	0.57	+0.1
4,050,774	-		GFF4029	0.58	-0.9
4,050,774	-		GFF4029	0.58	-0.5
4,050,784	-		GFF4029	0.59	+1.5
4,050,790	+		GFF4029	0.59	-0.7
4,050,793	-		GFF4029	0.59	+0.5
4,050,793	-		GFF4029	0.59	+0.0
4,050,795	+		GFF4029	0.59	+0.1
4,050,800	+		GFF4029	0.60	-1.3
4,050,800	+		GFF4029	0.60	-0.3
4,050,800	+		GFF4029	0.60	-2.1
4,050,808	-		GFF4029	0.61	+0.1
4,050,808	-		GFF4029	0.61	-0.4
4,050,834	+		GFF4029	0.63	-0.1
4,050,884	+		GFF4029	0.67	-0.3
4,050,884	+		GFF4029	0.67	-0.0
4,050,927	-		GFF4029	0.70	-0.2
4,050,932	-		GFF4029	0.70	-0.6
4,050,932	-		GFF4029	0.70	-0.7
4,050,944	-		GFF4029	0.71	-0.2
4,050,969	-		GFF4029	0.73	-0.5
4,050,984	+		GFF4029	0.74	-0.8
4,050,992	-		GFF4029	0.75	+0.2
4,050,992	-		GFF4029	0.75	-1.1
4,050,998	-		GFF4029	0.76	-0.6
4,051,014	+		GFF4029	0.77	+0.1
4,051,027	-		GFF4029	0.78	+0.2
4,051,037	+		GFF4029	0.79	-0.9
4,051,037	+		GFF4029	0.79	-0.7
4,051,043	-		GFF4029	0.79	+0.3
4,051,045	-		GFF4029	0.79	-0.3
4,051,045	-		GFF4029	0.79	-0.3
4,051,053	-		GFF4029	0.80	+0.0
4,051,068	-		GFF4029	0.81	-2.3
4,051,069	-		GFF4029	0.81	-0.5
4,051,071	+		GFF4029	0.81	-0.7
4,051,087	-		GFF4029	0.83	-0.1
4,051,108	+		GFF4029	0.84	+0.2
4,051,116	-		GFF4029	0.85	-0.4
4,051,164	+		GFF4029	0.89	-2.0
4,051,165	-		GFF4029	0.89	-1.0
4,051,169	+		GFF4029	0.89	-1.8
4,051,177	-		GFF4029	0.90	-1.1
4,051,178	+		GFF4029	0.90	+1.4
4,051,178	+		GFF4029	0.90	+0.1
4,051,195	+				-1.7
4,051,202	+				+0.8
4,051,215	+				+0.7
4,051,215	+				-1.3
4,051,215	+				+0.3
4,051,215	+				+0.9
4,051,215	-				-0.4
4,051,223	-				-2.2
4,051,233	+				-0.3
4,051,239	+				+0.5
4,051,269	-				-0.1
4,051,288	+				-1.0
4,051,288	+				+0.1
4,051,288	+				-0.7
4,051,293	+				-1.1
4,051,296	-				+1.3
4,051,296	-				-1.1
4,051,296	-				-0.9
4,051,301	+				-0.8
4,051,301	+				-0.6
4,051,301	+				+0.0
4,051,301	+				+0.1
4,051,301	+				+0.3
4,051,301	+				-2.2
4,051,301	+				-0.7
4,051,301	+				+0.3
4,051,301	-				+0.4
4,051,301	-				-0.6
4,051,301	-				+0.5
4,051,301	-				+1.2
4,051,301	-				+0.4
4,051,309	-				-0.5
4,051,309	-				-1.6
4,051,309	-				-1.0
4,051,341	+				-0.6
4,051,341	+				-0.0
4,051,342	-				-0.1
4,051,343	+				-0.7
4,051,343	+				+0.6
4,051,343	+				+0.3
4,051,351	-				-0.7
4,051,351	-				+0.0
4,051,351	-				-1.5
4,051,351	-				+0.9
4,051,373	+		GFF4030	0.12	-0.7
4,051,391	+		GFF4030	0.16	-1.4
4,051,407	-		GFF4030	0.20	-0.2
4,051,409	+		GFF4030	0.20	+0.9
4,051,411	-		GFF4030	0.21	-2.0
4,051,414	+		GFF4030	0.21	-1.0
4,051,414	+		GFF4030	0.21	-1.5
4,051,414	+		GFF4030	0.21	-0.2
4,051,417	-		GFF4030	0.22	-0.3
4,051,417	-		GFF4030	0.22	-1.0
4,051,417	-		GFF4030	0.22	+0.5
4,051,417	-		GFF4030	0.22	+0.2
4,051,422	-		GFF4030	0.23	-0.1
4,051,422	-		GFF4030	0.23	-0.8
4,051,422	-		GFF4030	0.23	-0.5
4,051,428	+		GFF4030	0.24	+0.2
4,051,428	+		GFF4030	0.24	-1.8
4,051,433	-		GFF4030	0.25	+1.3
4,051,436	-		GFF4030	0.26	-0.7
4,051,436	-		GFF4030	0.26	-0.4
4,051,436	-		GFF4030	0.26	-0.3
4,051,445	+		GFF4030	0.28	+0.6
4,051,445	+		GFF4030	0.28	+1.6
4,051,453	-		GFF4030	0.30	-0.1
4,051,483	+		GFF4030	0.36	-0.8
4,051,491	-		GFF4030	0.38	+0.1
4,051,498	-		GFF4030	0.40	+0.6
4,051,500	+		GFF4030	0.40	-0.1
4,051,500	+		GFF4030	0.40	-0.8
4,051,501	-		GFF4030	0.40	+0.3
4,051,505	+		GFF4030	0.41	+0.4
4,051,505	+		GFF4030	0.41	+1.2
4,051,507	+		GFF4030	0.42	+0.6
4,051,507	+		GFF4030	0.42	-2.7
4,051,508	-		GFF4030	0.42	+0.6
4,051,508	-		GFF4030	0.42	+0.6
4,051,508	-		GFF4030	0.42	+0.8
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