Strain Fitness in Sphingobium sp. HT1-2 around GFF3973

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,006,633	+				-0.1
4,006,676	+				+1.8
4,006,681	+				-0.4
4,006,688	-				-0.8
4,006,689	-				+0.6
4,006,689	-				-1.6
4,006,697	+				-0.6
4,006,708	+		GFF3971	0.11	-1.0
4,006,708	+		GFF3971	0.11	-0.9
4,006,708	+		GFF3971	0.11	-1.0
4,006,708	+		GFF3971	0.11	-0.8
4,006,708	+		GFF3971	0.11	-1.4
4,006,708	+		GFF3971	0.11	+0.7
4,006,708	+		GFF3971	0.11	-0.4
4,006,708	+		GFF3971	0.11	-1.5
4,006,708	+		GFF3971	0.11	-2.1
4,006,708	+		GFF3971	0.11	+0.2
4,006,708	+		GFF3971	0.11	-0.4
4,006,708	+		GFF3971	0.11	-1.6
4,006,708	+		GFF3971	0.11	-0.4
4,006,708	+		GFF3971	0.11	-0.2
4,006,708	+		GFF3971	0.11	-1.0
4,006,716	-		GFF3971	0.12	+0.2
4,006,716	-		GFF3971	0.12	-0.2
4,006,716	-		GFF3971	0.12	-0.2
4,006,716	-		GFF3971	0.12	-0.3
4,006,716	-		GFF3971	0.12	+0.1
4,006,716	-		GFF3971	0.12	-0.2
4,006,716	-		GFF3971	0.12	-0.9
4,006,716	-		GFF3971	0.12	+0.4
4,006,716	-		GFF3971	0.12	+1.5
4,006,716	-		GFF3971	0.12	-0.1
4,006,716	-		GFF3971	0.12	-0.5
4,006,716	-		GFF3971	0.12	-1.3
4,006,716	-		GFF3971	0.12	-1.9
4,006,716	-		GFF3971	0.12	+0.8
4,006,716	-		GFF3971	0.12	-1.4
4,006,716	-		GFF3971	0.12	-1.2
4,006,716	-		GFF3971	0.12	+0.9
4,006,716	-		GFF3971	0.12	-1.8
4,006,716	-		GFF3971	0.12	+0.9
4,006,716	-		GFF3971	0.12	+0.2
4,006,716	-		GFF3971	0.12	+0.9
4,006,716	-		GFF3971	0.12	+0.9
4,006,716	-		GFF3971	0.12	-0.1
4,006,716	-		GFF3971	0.12	-0.8
4,006,716	-		GFF3971	0.12	-0.7
4,006,749	-		GFF3971	0.17	-1.8
4,006,751	-		GFF3971	0.17	-0.0
4,006,764	-		GFF3971	0.19	+0.2
4,006,773	+		GFF3971	0.20	-0.2
4,006,773	+		GFF3971	0.20	-0.1
4,006,773	+		GFF3971	0.20	-0.5
4,006,781	-		GFF3971	0.21	+0.3
4,006,781	-		GFF3971	0.21	-0.5
4,006,788	+		GFF3971	0.22	-0.9
4,006,789	+		GFF3971	0.22	+0.3
4,006,789	+		GFF3971	0.22	-0.2
4,006,789	+		GFF3971	0.22	+1.1
4,006,789	+		GFF3971	0.22	+1.1
4,006,796	-		GFF3971	0.23	+0.3
4,006,796	-		GFF3971	0.23	+0.3
4,006,797	+		GFF3971	0.24	-0.4
4,006,797	-		GFF3971	0.24	+0.5
4,006,797	-		GFF3971	0.24	-0.3
4,006,797	-		GFF3971	0.24	-0.8
4,006,797	-		GFF3971	0.24	+0.8
4,006,797	-		GFF3971	0.24	-2.3
4,006,797	-		GFF3971	0.24	+0.3
4,006,797	-		GFF3971	0.24	-0.9
4,006,861	-		GFF3971	0.33	+1.8
4,006,871	-		GFF3971	0.35	-0.2
4,006,871	-		GFF3971	0.35	-0.5
4,006,879	+		GFF3971	0.36	-0.7
4,006,898	+		GFF3971	0.38	-0.1
4,006,912	+		GFF3971	0.41	-0.9
4,006,926	-		GFF3971	0.43	-2.0
4,006,935	+		GFF3971	0.44	-0.5
4,006,942	+		GFF3971	0.45	+0.2
4,006,965	+		GFF3971	0.48	+0.1
4,006,965	+		GFF3971	0.48	-0.4
4,006,965	+		GFF3971	0.48	+1.5
4,006,995	+		GFF3971	0.53	+0.7
4,006,998	-		GFF3971	0.53	-2.0
4,007,056	-		GFF3971	0.62	+0.3
4,007,058	+		GFF3971	0.62	+0.4
4,007,058	+		GFF3971	0.62	-0.4
4,007,064	+		GFF3971	0.63	+0.0
4,007,064	+		GFF3971	0.63	-1.5
4,007,064	+		GFF3971	0.63	-1.1
4,007,066	-		GFF3971	0.63	+0.1
4,007,106	-		GFF3971	0.69	-0.4
4,007,113	+		GFF3971	0.70	+0.4
4,007,142	+		GFF3971	0.74	+0.6
4,007,150	-		GFF3971	0.75	+1.2
4,007,150	-		GFF3971	0.75	-0.9
4,007,155	+		GFF3971	0.76	+0.4
4,007,163	+		GFF3971	0.77	+0.5
4,007,163	-		GFF3971	0.77	+0.2
4,007,170	+		GFF3971	0.78	-1.1
4,007,170	+		GFF3971	0.78	-1.0
4,007,170	+		GFF3971	0.78	+0.6
4,007,170	+		GFF3971	0.78	+0.0
4,007,170	+		GFF3971	0.78	-1.4
4,007,170	+		GFF3971	0.78	-1.4
4,007,170	+		GFF3971	0.78	-1.0
4,007,171	-		GFF3971	0.79	-0.4
4,007,178	-		GFF3971	0.80	-0.8
4,007,178	-		GFF3971	0.80	+0.3
4,007,178	-		GFF3971	0.80	+0.5
4,007,204	+		GFF3971	0.83	-0.6
4,007,204	+		GFF3971	0.83	-0.6
4,007,204	+		GFF3971	0.83	-1.2
4,007,204	+		GFF3971	0.83	-0.4
4,007,209	-		GFF3971	0.84	+0.1
4,007,212	-		GFF3971	0.85	+0.1
4,007,212	-		GFF3971	0.85	-0.1
4,007,212	-		GFF3971	0.85	-0.9
4,007,212	-		GFF3971	0.85	-0.8
4,007,217	-		GFF3971	0.85	+0.3
4,007,217	-		GFF3971	0.85	-0.5
4,007,221	+		GFF3971	0.86	+0.1
4,007,226	+		GFF3971	0.87	-0.2
4,007,247	-		GFF3971	0.90	-0.5
4,007,265	-				+0.1
4,007,290	-				-1.4
4,007,294	+				+0.6
4,007,311	+				-0.5
4,007,312	+				+0.7
4,007,312	+				-0.5
4,007,312	+				+0.0
4,007,312	+				-2.1
4,007,312	+				+0.6
4,007,312	+				+0.5
4,007,313	-				-0.1
4,007,319	-				+0.2
4,007,320	-				+0.1
4,007,380	+		GFF3972	0.26	-0.5
4,007,391	+		GFF3972	0.31	+1.1
4,007,396	+		GFF3972	0.33	+0.8
4,007,400	+		GFF3972	0.35	+0.6
4,007,408	-		GFF3972	0.39	-1.3
4,007,408	-		GFF3972	0.39	-1.2
4,007,410	+		GFF3972	0.39	-0.2
4,007,412	-		GFF3972	0.40	+0.5
4,007,413	-		GFF3972	0.41	-0.8
4,007,418	-		GFF3972	0.43	-0.2
4,007,431	+		GFF3972	0.49	+0.3
4,007,439	-		GFF3972	0.52	+1.0
4,007,439	-		GFF3972	0.52	-0.5
4,007,467	+		GFF3972	0.64	-1.1
4,007,500	-		GFF3972	0.79	-1.5
4,007,512	+		GFF3972	0.84	+0.1
4,007,512	+		GFF3972	0.84	-0.4
4,007,513	-		GFF3972	0.85	-0.1
4,007,520	-		GFF3972	0.88	+0.4
4,007,525	-				-1.2
4,007,541	+				-0.7
4,007,541	+				+1.0
4,007,541	+				+0.6
4,007,541	+				+0.4
4,007,548	-				-1.2
4,007,549	-				+1.1
4,007,554	+				-1.1
4,007,554	+				+0.4
4,007,554	+				-0.2
4,007,557	-				-0.1
4,007,560	+				-1.8
4,007,562	-				-0.7
4,007,562	-				-0.7
4,007,562	-				+0.2
4,007,563	-				-1.8
4,007,568	-				+0.1
4,007,568	-				-2.5
4,007,583	-				+0.3
4,007,589	-				-1.9
4,007,618	+		GFF3973	0.11	-1.2
4,007,621	-		GFF3973	0.11	-0.9
4,007,630	-		GFF3973	0.13	-0.6
4,007,656	-		GFF3973	0.17	-1.8
4,007,666	-		GFF3973	0.18	-0.2
4,007,685	-		GFF3973	0.21	-1.0
4,007,685	-		GFF3973	0.21	-0.6
4,007,693	-		GFF3973	0.22	+0.1
4,007,693	-		GFF3973	0.22	-0.4
4,007,721	-		GFF3973	0.26	+0.6
4,007,736	+		GFF3973	0.28	+0.0
4,007,748	+		GFF3973	0.30	+1.4
4,007,763	+		GFF3973	0.32	+0.5
4,007,771	-		GFF3973	0.33	+1.5
4,007,806	+		GFF3973	0.39	-0.6
4,007,806	+		GFF3973	0.39	+0.0
4,007,814	-		GFF3973	0.40	-0.3
4,007,817	+		GFF3973	0.40	-1.6
4,007,825	-		GFF3973	0.41	-0.4
4,007,826	-		GFF3973	0.42	-0.0
4,007,826	-		GFF3973	0.42	+0.6
4,007,835	-		GFF3973	0.43	-2.5
4,007,837	+		GFF3973	0.43	+1.3
4,007,838	+		GFF3973	0.43	+0.2
4,007,841	-		GFF3973	0.44	-0.2
4,007,848	+		GFF3973	0.45	-0.0
4,007,848	+		GFF3973	0.45	+0.5
4,007,848	+		GFF3973	0.45	-1.4
4,007,848	+		GFF3973	0.45	-2.2
4,007,848	+		GFF3973	0.45	-1.9
4,007,855	+		GFF3973	0.46	-0.3
4,007,855	+		GFF3973	0.46	-0.5
4,007,855	+		GFF3973	0.46	+0.1
4,007,856	-		GFF3973	0.46	+0.7
4,007,856	-		GFF3973	0.46	-0.3
4,007,856	-		GFF3973	0.46	+0.8
4,007,856	-		GFF3973	0.46	-1.1
4,007,856	-		GFF3973	0.46	+1.0
4,007,856	-		GFF3973	0.46	+0.2
4,007,858	+		GFF3973	0.46	-1.3
4,007,858	+		GFF3973	0.46	-0.0
4,007,861	-		GFF3973	0.47	+0.8
4,007,863	+		GFF3973	0.47	+0.3
4,007,863	+		GFF3973	0.47	+0.4
4,007,863	+		GFF3973	0.47	+0.8
4,007,863	+		GFF3973	0.47	+0.3
4,007,863	+		GFF3973	0.47	+0.2
4,007,863	+		GFF3973	0.47	-1.7
4,007,863	+		GFF3973	0.47	-0.0
4,007,863	+		GFF3973	0.47	-2.4
4,007,863	+		GFF3973	0.47	-1.2
4,007,863	+		GFF3973	0.47	+0.9
4,007,863	+		GFF3973	0.47	-1.4
4,007,863	-		GFF3973	0.47	+0.4
4,007,866	-		GFF3973	0.47	-1.2
4,007,866	-		GFF3973	0.47	+0.0
4,007,871	-		GFF3973	0.48	+0.5
4,007,871	-		GFF3973	0.48	+0.4
4,007,871	-		GFF3973	0.48	+0.8
4,007,871	-		GFF3973	0.48	+0.5
4,007,871	-		GFF3973	0.48	-1.5
4,007,871	-		GFF3973	0.48	-0.3
4,007,871	-		GFF3973	0.48	-0.2
4,007,871	-		GFF3973	0.48	-0.6
4,007,871	-		GFF3973	0.48	-0.4
4,007,871	-		GFF3973	0.48	-0.4
4,007,871	-		GFF3973	0.48	-1.6
4,007,871	-		GFF3973	0.48	-0.8
4,007,871	-		GFF3973	0.48	-0.1
4,007,875	-		GFF3973	0.49	-0.8
4,007,894	+		GFF3973	0.52	+0.6
4,007,899	+		GFF3973	0.52	-0.8
4,007,899	+		GFF3973	0.52	+0.4
4,007,904	-		GFF3973	0.53	-0.5
4,007,906	+		GFF3973	0.53	+1.0
4,007,907	-		GFF3973	0.54	-0.5
4,007,927	+		GFF3973	0.56	-0.5
4,007,935	-		GFF3973	0.58	-0.4
4,007,946	+		GFF3973	0.59	+0.3
4,007,946	+		GFF3973	0.59	+0.5
4,007,946	+		GFF3973	0.59	+0.2
4,007,946	+		GFF3973	0.59	-0.7
4,007,954	-		GFF3973	0.60	-0.3
4,007,954	-		GFF3973	0.60	-1.4
4,007,956	+		GFF3973	0.61	-2.2
4,007,956	+		GFF3973	0.61	+0.2
4,007,956	+		GFF3973	0.61	+0.5
4,008,028	+		GFF3973	0.71	-1.8
4,008,028	+		GFF3973	0.71	-0.2
4,008,050	+		GFF3973	0.75	-1.4
4,008,053	+		GFF3973	0.75	+0.1
4,008,053	-		GFF3973	0.75	-1.2
4,008,061	-		GFF3973	0.76	-0.1
4,008,063	-		GFF3973	0.77	-2.6
4,008,071	+		GFF3973	0.78	+0.4
4,008,071	+		GFF3973	0.78	+0.1
4,008,075	+		GFF3973	0.78	+0.9
4,008,075	+		GFF3973	0.78	-0.7
4,008,075	+		GFF3973	0.78	-0.0
4,008,075	+		GFF3973	0.78	+1.4
4,008,081	-		GFF3973	0.79	+0.5
4,008,083	-		GFF3973	0.79	-0.4
4,008,083	-		GFF3973	0.79	-0.8
4,008,109	+		GFF3973	0.83	+0.6
4,008,121	+		GFF3973	0.85	+1.3
4,008,129	-		GFF3973	0.86	-1.8
4,008,163	+				+0.4
4,008,172	-				+0.2
4,008,181	+				-0.7
4,008,191	+				+0.2
4,008,195	+				+0.2
4,008,209	+				-0.3
4,008,211	+				+0.1
4,008,213	+				+0.3
4,008,219	-				-1.2
4,008,219	-				+0.0
4,008,219	-				-3.0
4,008,219	-				-0.6
4,008,219	-				+1.0
4,008,221	-				+1.0
4,008,233	-				-0.6
4,008,317	+		GFF3974	0.16	-0.3
4,008,325	-		GFF3974	0.18	+1.1
4,008,337	+		GFF3974	0.20	+0.4
4,008,375	+		GFF3974	0.28	+0.3
4,008,375	+		GFF3974	0.28	+0.0
4,008,383	-		GFF3974	0.29	-0.7
4,008,416	+		GFF3974	0.36	-0.4
4,008,429	+		GFF3974	0.38	-0.4
4,008,437	-		GFF3974	0.40	+0.7
4,008,445	+		GFF3974	0.42	+0.1
4,008,464	+		GFF3974	0.45	+0.6
4,008,472	-		GFF3974	0.47	-1.6
4,008,476	+		GFF3974	0.48	+0.1
4,008,482	-		GFF3974	0.49	+0.6
4,008,484	-		GFF3974	0.49	+0.1
4,008,484	-		GFF3974	0.49	-0.5
4,008,495	+		GFF3974	0.52	+0.2
4,008,495	+		GFF3974	0.52	-0.4
4,008,511	-		GFF3974	0.55	-1.0
4,008,513	-		GFF3974	0.55	-1.4
4,008,527	+		GFF3974	0.58	-2.4
4,008,528	+		GFF3974	0.58	-0.9
4,008,553	+		GFF3974	0.63	-0.7
4,008,561	-		GFF3974	0.65	-1.0
4,008,570	-		GFF3974	0.66	+0.1
4,008,590	-		GFF3974	0.70	-2.8
4,008,604	+		GFF3974	0.73	+0.5
4,008,610	-		GFF3974	0.74	-0.9
4,008,612	-		GFF3974	0.75	-0.3
4,008,628	+		GFF3974	0.78	+0.0
4,008,628	+		GFF3974	0.78	+1.5
4,008,628	+		GFF3974	0.78	+0.6
4,008,628	+		GFF3974	0.78	+0.9
4,008,628	+		GFF3974	0.78	-0.9
4,008,628	+		GFF3974	0.78	-1.2
4,008,628	+		GFF3974	0.78	+0.2
4,008,628	+		GFF3974	0.78	-0.5
4,008,628	+		GFF3974	0.78	-1.2
4,008,636	-		GFF3974	0.80	-0.9
4,008,636	-		GFF3974	0.80	-1.5
4,008,636	-		GFF3974	0.80	-0.4
4,008,636	-		GFF3974	0.80	-2.3
4,008,636	-		GFF3974	0.80	+0.1
4,008,636	-		GFF3974	0.80	-1.2
4,008,641	-		GFF3974	0.81	-1.0
4,008,648	+		GFF3974	0.82	-0.4
4,008,648	+		GFF3974	0.82	-0.4
4,008,656	-		GFF3974	0.84	+0.1
4,008,656	-		GFF3974	0.84	-0.4
4,008,656	-		GFF3974	0.84	+0.5
4,008,656	-		GFF3974	0.84	-1.7
4,008,674	+		GFF3974	0.87	+0.8
4,008,713	-				+0.5
4,008,731	-				+0.4
4,008,733	+				-1.7
4,008,733	+				+1.3
4,008,753	-				+1.1
4,008,781	-				-1.2
4,008,789	+		GFF3975	0.11	-0.2
4,008,797	-		GFF3975	0.13	-1.2
4,008,799	+		GFF3975	0.13	-0.8
4,008,799	+		GFF3975	0.13	-0.6
4,008,799	+		GFF3975	0.13	+0.2
4,008,799	+		GFF3975	0.13	-0.5
4,008,799	+		GFF3975	0.13	+1.1
4,008,799	+		GFF3975	0.13	+0.7
4,008,799	+		GFF3975	0.13	-2.4
4,008,799	+		GFF3975	0.13	+0.4
4,008,799	+		GFF3975	0.13	+0.5
4,008,807	-		GFF3975	0.15	+0.3
4,008,807	-		GFF3975	0.15	-0.5
4,008,807	-		GFF3975	0.15	+0.5
4,008,807	-		GFF3975	0.15	-0.5
4,008,807	-		GFF3975	0.15	-0.6
4,008,807	-		GFF3975	0.15	-1.5
4,008,807	-		GFF3975	0.15	+1.9
4,008,807	-		GFF3975	0.15	+0.3
4,008,807	-		GFF3975	0.15	-0.3
4,008,807	-		GFF3975	0.15	-1.3
4,008,807	-		GFF3975	0.15	-0.8
4,008,807	-		GFF3975	0.15	-0.4
4,008,807	-		GFF3975	0.15	-1.5
4,008,807	-		GFF3975	0.15	-1.5
4,008,807	-		GFF3975	0.15	+0.9
4,008,807	-		GFF3975	0.15	+1.1
4,008,815	-		GFF3975	0.17	-2.3
4,008,831	+		GFF3975	0.20	-1.1
4,008,848	-		GFF3975	0.24	-0.3
4,008,878	+		GFF3975	0.31	-1.0
4,008,893	+		GFF3975	0.34	-0.1
4,008,893	+		GFF3975	0.34	-1.1
4,008,899	+		GFF3975	0.35	+1.1
4,008,899	-		GFF3975	0.35	-0.1
4,008,901	-		GFF3975	0.36	-0.7
4,008,901	-		GFF3975	0.36	-1.9
4,008,901	-		GFF3975	0.36	-1.2
4,008,901	-		GFF3975	0.36	-0.9
4,008,909	-		GFF3975	0.37	+1.0
4,008,909	-		GFF3975	0.37	+0.4
4,008,911	-		GFF3975	0.38	+0.1
4,008,919	-		GFF3975	0.39	-0.1
4,008,924	+		GFF3975	0.41	-0.1
4,008,934	+		GFF3975	0.43	-0.2
4,008,934	-		GFF3975	0.43	+0.3
4,008,942	-		GFF3975	0.44	-2.6
4,008,949	+		GFF3975	0.46	+0.3
4,008,950	-		GFF3975	0.46	-2.1
4,008,957	-		GFF3975	0.48	-1.9
4,009,010	+		GFF3975	0.59	-0.5
4,009,034	+		GFF3975	0.64	+1.6
4,009,042	-		GFF3975	0.66	+0.5
4,009,055	+		GFF3975	0.69	-0.0
4,009,055	+		GFF3975	0.69	-0.2
4,009,067	+		GFF3975	0.72	+0.0
4,009,075	-		GFF3975	0.73	+0.4
4,009,080	-		GFF3975	0.75	-1.9
4,009,107	+		GFF3975	0.80	+1.1
4,009,146	+		GFF3975	0.89	-0.0
4,009,161	-				-1.2
4,009,172	-				+0.3
4,009,173	-				-0.6
4,009,184	-				-0.1
4,009,211	-				-1.2
4,009,218	-				+1.5
4,009,218	-				+0.3
4,009,220	-				-1.1