Strain Fitness in Sphingobium sp. HT1-2 around GFF3970

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,005,271	+				-0.2
4,005,271	+				-0.4
4,005,271	+				-0.2
4,005,271	+				-0.8
4,005,271	+				+0.5
4,005,271	+				-0.7
4,005,272	-				-1.5
4,005,272	-				+0.5
4,005,279	-				-2.3
4,005,279	-				+0.3
4,005,279	-				+0.1
4,005,298	-				+0.6
4,005,317	+				+0.4
4,005,317	+				+0.4
4,005,322	+		GFF3968	0.11	+1.2
4,005,325	-		GFF3968	0.11	-2.0
4,005,325	-		GFF3968	0.11	-1.9
4,005,357	-		GFF3968	0.19	-1.0
4,005,375	+		GFF3968	0.23	-0.2
4,005,380	+		GFF3968	0.24	+0.0
4,005,381	+		GFF3968	0.24	+0.3
4,005,381	+		GFF3968	0.24	+0.1
4,005,388	-		GFF3968	0.26	-0.1
4,005,390	+		GFF3968	0.26	+0.2
4,005,393	+		GFF3968	0.27	-0.2
4,005,395	+		GFF3968	0.27	+0.2
4,005,395	+		GFF3968	0.27	+0.6
4,005,403	-		GFF3968	0.29	-1.7
4,005,403	-		GFF3968	0.29	-2.3
4,005,403	-		GFF3968	0.29	+0.2
4,005,403	-		GFF3968	0.29	-0.4
4,005,403	-		GFF3968	0.29	-0.6
4,005,410	+		GFF3968	0.30	+0.5
4,005,410	+		GFF3968	0.30	-1.1
4,005,410	+		GFF3968	0.30	-0.3
4,005,410	+		GFF3968	0.30	-0.9
4,005,410	+		GFF3968	0.30	-0.6
4,005,410	+		GFF3968	0.30	+0.2
4,005,410	+		GFF3968	0.30	-0.5
4,005,410	+		GFF3968	0.30	-0.6
4,005,410	+		GFF3968	0.30	+0.8
4,005,418	-		GFF3968	0.32	-0.4
4,005,418	-		GFF3968	0.32	-0.2
4,005,418	-		GFF3968	0.32	-2.0
4,005,418	-		GFF3968	0.32	+0.6
4,005,418	-		GFF3968	0.32	-1.0
4,005,418	-		GFF3968	0.32	-1.4
4,005,418	-		GFF3968	0.32	+0.1
4,005,418	-		GFF3968	0.32	-1.3
4,005,418	-		GFF3968	0.32	+0.3
4,005,418	-		GFF3968	0.32	+0.1
4,005,418	-		GFF3968	0.32	-1.4
4,005,418	-		GFF3968	0.32	-0.3
4,005,418	-		GFF3968	0.32	-1.0
4,005,418	-		GFF3968	0.32	-0.2
4,005,418	-		GFF3968	0.32	-0.6
4,005,418	-		GFF3968	0.32	-0.0
4,005,420	+		GFF3968	0.33	-0.7
4,005,420	+		GFF3968	0.33	+1.3
4,005,420	+		GFF3968	0.33	-2.2
4,005,420	+		GFF3968	0.33	-1.2
4,005,423	-		GFF3968	0.33	-1.6
4,005,428	-		GFF3968	0.34	+0.6
4,005,428	-		GFF3968	0.34	-1.4
4,005,428	-		GFF3968	0.34	-0.2
4,005,437	+		GFF3968	0.36	+1.2
4,005,437	+		GFF3968	0.36	+0.1
4,005,445	-		GFF3968	0.38	-1.0
4,005,465	+		GFF3968	0.43	+1.5
4,005,473	-		GFF3968	0.45	+0.4
4,005,473	-		GFF3968	0.45	+0.4
4,005,475	+		GFF3968	0.45	-1.1
4,005,475	+		GFF3968	0.45	-0.4
4,005,478	-		GFF3968	0.46	+0.5
4,005,483	-		GFF3968	0.47	-0.9
4,005,483	-		GFF3968	0.47	-0.5
4,005,483	-		GFF3968	0.47	-0.9
4,005,483	-		GFF3968	0.47	-0.2
4,005,496	-		GFF3968	0.50	-0.8
4,005,496	-		GFF3968	0.50	+1.0
4,005,496	-		GFF3968	0.50	-0.8
4,005,503	+		GFF3968	0.51	-0.8
4,005,503	-		GFF3968	0.51	+0.3
4,005,534	+		GFF3968	0.58	+0.9
4,005,561	-		GFF3968	0.64	+0.9
4,005,571	-		GFF3968	0.66	+0.4
4,005,601	+		GFF3968	0.73	+0.9
4,005,607	-		GFF3968	0.74	+0.4
4,005,618	+		GFF3968	0.77	-0.4
4,005,640	+		GFF3968	0.82	-2.5
4,005,640	-		GFF3968	0.82	+0.8
4,005,640	-		GFF3968	0.82	-2.0
4,005,644	+		GFF3968	0.83	+0.3
4,005,673	+		GFF3968	0.89	-1.4
4,005,698	+				+0.2
4,005,698	+				-0.6
4,005,706	-				-0.4
4,005,708	+				-2.5
4,005,714	+				-2.5
4,005,716	-				+0.9
4,005,723	+				-0.6
4,005,723	+				+0.0
4,005,723	+				-0.4
4,005,723	+				-0.2
4,005,723	+				-0.8
4,005,723	+				+0.2
4,005,723	+				+0.9
4,005,723	+				+1.4
4,005,723	+				-0.4
4,005,723	+				-0.8
4,005,723	+				-0.2
4,005,723	+				-0.3
4,005,723	+				-0.4
4,005,723	+				-1.8
4,005,723	+				-0.5
4,005,723	+				+1.0
4,005,731	-				+0.6
4,005,731	-				-0.8
4,005,731	-				-1.2
4,005,731	-				-0.9
4,005,731	-				-1.5
4,005,731	-				+1.4
4,005,731	-				-1.0
4,005,731	-				-0.2
4,005,731	-				+0.4
4,005,731	-				+0.7
4,005,731	-				-0.1
4,005,731	-				+0.4
4,005,742	+				-0.5
4,005,792	+				-0.2
4,005,792	+				-0.3
4,005,809	+				-0.4
4,005,814	+				-0.1
4,005,814	+				-0.6
4,005,814	+				-0.1
4,005,816	+				-1.2
4,005,817	-				-0.9
4,005,820	+				+0.1
4,005,822	-				+0.2
4,005,822	-				+0.9
4,005,826	-				-0.1
4,005,828	-				+1.2
4,005,839	+				+0.6
4,005,847	+				-0.7
4,005,847	-				-0.1
4,005,866	-				-1.7
4,005,867	+				+0.9
4,005,885	+				+0.6
4,005,893	-				+0.4
4,005,893	-				+1.1
4,005,893	-				-0.2
4,005,893	-				-0.4
4,005,893	-				-1.4
4,005,893	-				-1.4
4,005,902	-				-0.6
4,005,907	+				+1.0
4,005,943	-		GFF3969	0.18	+1.6
4,005,955	+		GFF3969	0.24	-2.4
4,005,963	-		GFF3969	0.27	+0.5
4,005,965	+		GFF3969	0.28	+0.2
4,005,984	+		GFF3969	0.36	-0.4
4,005,984	+		GFF3969	0.36	-0.4
4,005,984	+		GFF3969	0.36	+0.6
4,005,992	-		GFF3969	0.39	-1.1
4,005,995	+		GFF3969	0.41	-0.4
4,006,000	-		GFF3969	0.43	+0.5
4,006,003	-		GFF3969	0.44	+1.1
4,006,057	+		GFF3969	0.67	-1.8
4,006,057	+		GFF3969	0.67	+0.0
4,006,057	+		GFF3969	0.67	+1.4
4,006,057	+		GFF3969	0.67	+0.3
4,006,064	-		GFF3969	0.70	-0.2
4,006,065	-		GFF3969	0.71	+0.3
4,006,065	-		GFF3969	0.71	-0.9
4,006,065	-		GFF3969	0.71	-1.6
4,006,071	-		GFF3969	0.73	-0.7
4,006,092	+		GFF3969	0.82	-0.5
4,006,094	+		GFF3969	0.83	-0.9
4,006,102	-		GFF3969	0.86	+0.8
4,006,103	+		GFF3969	0.87	-0.3
4,006,111	-				-0.1
4,006,113	-				-0.1
4,006,113	-				+0.2
4,006,152	+				-0.7
4,006,174	+				-2.6
4,006,182	+				+0.8
4,006,190	+				-0.9
4,006,190	+				+0.8
4,006,205	-				-0.3
4,006,207	+				-0.0
4,006,207	+				+0.9
4,006,224	+				-2.0
4,006,229	+				-0.9
4,006,229	+				-0.6
4,006,257	-				-1.0
4,006,329	-		GFF3970	0.16	-2.2
4,006,351	+		GFF3970	0.22	+0.6
4,006,351	+		GFF3970	0.22	-1.7
4,006,369	+		GFF3970	0.27	+0.6
4,006,374	+		GFF3970	0.28	-0.4
4,006,377	-		GFF3970	0.29	-0.8
4,006,379	+		GFF3970	0.30	-1.3
4,006,384	+		GFF3970	0.31	-0.3
4,006,385	+		GFF3970	0.31	-1.6
4,006,385	+		GFF3970	0.31	-1.5
4,006,400	-		GFF3970	0.35	-1.9
4,006,418	+		GFF3970	0.40	+0.6
4,006,421	-		GFF3970	0.41	-0.8
4,006,423	+		GFF3970	0.42	-1.2
4,006,431	-		GFF3970	0.44	-0.1
4,006,431	-		GFF3970	0.44	+0.6
4,006,440	+		GFF3970	0.46	-0.7
4,006,442	+		GFF3970	0.47	-0.1
4,006,448	-		GFF3970	0.48	+0.0
4,006,462	+		GFF3970	0.52	+0.5
4,006,474	-		GFF3970	0.55	-0.2
4,006,476	+		GFF3970	0.56	+0.1
4,006,476	+		GFF3970	0.56	-1.0
4,006,496	-		GFF3970	0.61	+0.3
4,006,506	+		GFF3970	0.64	-0.8
4,006,521	+		GFF3970	0.68	-0.2
4,006,524	+		GFF3970	0.69	+0.2
4,006,538	-		GFF3970	0.73	-0.6
4,006,538	-		GFF3970	0.73	+0.4
4,006,633	+				-0.1
4,006,676	+				+1.8
4,006,681	+				-0.4
4,006,688	-				-0.8
4,006,689	-				+0.6
4,006,689	-				-1.6
4,006,697	+				-0.6
4,006,708	+		GFF3971	0.11	-1.0
4,006,708	+		GFF3971	0.11	-0.9
4,006,708	+		GFF3971	0.11	-1.0
4,006,708	+		GFF3971	0.11	-0.8
4,006,708	+		GFF3971	0.11	-1.4
4,006,708	+		GFF3971	0.11	+0.7
4,006,708	+		GFF3971	0.11	-0.4
4,006,708	+		GFF3971	0.11	-1.5
4,006,708	+		GFF3971	0.11	-2.1
4,006,708	+		GFF3971	0.11	+0.2
4,006,708	+		GFF3971	0.11	-0.4
4,006,708	+		GFF3971	0.11	-1.6
4,006,708	+		GFF3971	0.11	-0.4
4,006,708	+		GFF3971	0.11	-0.2
4,006,708	+		GFF3971	0.11	-1.0
4,006,716	-		GFF3971	0.12	+0.2
4,006,716	-		GFF3971	0.12	-0.2
4,006,716	-		GFF3971	0.12	-0.2
4,006,716	-		GFF3971	0.12	-0.3
4,006,716	-		GFF3971	0.12	+0.1
4,006,716	-		GFF3971	0.12	-0.2
4,006,716	-		GFF3971	0.12	-0.9
4,006,716	-		GFF3971	0.12	+0.4
4,006,716	-		GFF3971	0.12	+1.5
4,006,716	-		GFF3971	0.12	-0.1
4,006,716	-		GFF3971	0.12	-0.5
4,006,716	-		GFF3971	0.12	-1.3
4,006,716	-		GFF3971	0.12	-1.9
4,006,716	-		GFF3971	0.12	+0.8
4,006,716	-		GFF3971	0.12	-1.4
4,006,716	-		GFF3971	0.12	-1.2
4,006,716	-		GFF3971	0.12	+0.9
4,006,716	-		GFF3971	0.12	-1.8
4,006,716	-		GFF3971	0.12	+0.9
4,006,716	-		GFF3971	0.12	+0.2
4,006,716	-		GFF3971	0.12	+0.9
4,006,716	-		GFF3971	0.12	+0.9
4,006,716	-		GFF3971	0.12	-0.1
4,006,716	-		GFF3971	0.12	-0.8
4,006,716	-		GFF3971	0.12	-0.7
4,006,749	-		GFF3971	0.17	-1.8
4,006,751	-		GFF3971	0.17	-0.0
4,006,764	-		GFF3971	0.19	+0.2
4,006,773	+		GFF3971	0.20	-0.2
4,006,773	+		GFF3971	0.20	-0.1
4,006,773	+		GFF3971	0.20	-0.5
4,006,781	-		GFF3971	0.21	+0.3
4,006,781	-		GFF3971	0.21	-0.5
4,006,788	+		GFF3971	0.22	-0.9
4,006,789	+		GFF3971	0.22	+0.3
4,006,789	+		GFF3971	0.22	-0.2
4,006,789	+		GFF3971	0.22	+1.1
4,006,789	+		GFF3971	0.22	+1.1
4,006,796	-		GFF3971	0.23	+0.3
4,006,796	-		GFF3971	0.23	+0.3
4,006,797	+		GFF3971	0.24	-0.4
4,006,797	-		GFF3971	0.24	+0.5
4,006,797	-		GFF3971	0.24	-0.3
4,006,797	-		GFF3971	0.24	-0.8
4,006,797	-		GFF3971	0.24	+0.8
4,006,797	-		GFF3971	0.24	-2.3
4,006,797	-		GFF3971	0.24	+0.3
4,006,797	-		GFF3971	0.24	-0.9
4,006,861	-		GFF3971	0.33	+1.8
4,006,871	-		GFF3971	0.35	-0.2
4,006,871	-		GFF3971	0.35	-0.5
4,006,879	+		GFF3971	0.36	-0.7
4,006,898	+		GFF3971	0.38	-0.1
4,006,912	+		GFF3971	0.41	-0.9
4,006,926	-		GFF3971	0.43	-2.0
4,006,935	+		GFF3971	0.44	-0.5
4,006,942	+		GFF3971	0.45	+0.2
4,006,965	+		GFF3971	0.48	+0.1
4,006,965	+		GFF3971	0.48	-0.4
4,006,965	+		GFF3971	0.48	+1.5
4,006,995	+		GFF3971	0.53	+0.7
4,006,998	-		GFF3971	0.53	-2.0
4,007,056	-		GFF3971	0.62	+0.3
4,007,058	+		GFF3971	0.62	+0.4
4,007,058	+		GFF3971	0.62	-0.4
4,007,064	+		GFF3971	0.63	+0.0
4,007,064	+		GFF3971	0.63	-1.5
4,007,064	+		GFF3971	0.63	-1.1
4,007,066	-		GFF3971	0.63	+0.1
4,007,106	-		GFF3971	0.69	-0.4
4,007,113	+		GFF3971	0.70	+0.4
4,007,142	+		GFF3971	0.74	+0.6
4,007,150	-		GFF3971	0.75	+1.2
4,007,150	-		GFF3971	0.75	-0.9
4,007,155	+		GFF3971	0.76	+0.4
4,007,163	+		GFF3971	0.77	+0.5
4,007,163	-		GFF3971	0.77	+0.2
4,007,170	+		GFF3971	0.78	-1.1
4,007,170	+		GFF3971	0.78	-1.0
4,007,170	+		GFF3971	0.78	+0.6
4,007,170	+		GFF3971	0.78	+0.0
4,007,170	+		GFF3971	0.78	-1.4
4,007,170	+		GFF3971	0.78	-1.4
4,007,170	+		GFF3971	0.78	-1.0
4,007,171	-		GFF3971	0.79	-0.4
4,007,178	-		GFF3971	0.80	-0.8
4,007,178	-		GFF3971	0.80	+0.3
4,007,178	-		GFF3971	0.80	+0.5
4,007,204	+		GFF3971	0.83	-0.6
4,007,204	+		GFF3971	0.83	-0.6
4,007,204	+		GFF3971	0.83	-1.2
4,007,204	+		GFF3971	0.83	-0.4
4,007,209	-		GFF3971	0.84	+0.1
4,007,212	-		GFF3971	0.85	+0.1
4,007,212	-		GFF3971	0.85	-0.1
4,007,212	-		GFF3971	0.85	-0.9
4,007,212	-		GFF3971	0.85	-0.8
4,007,217	-		GFF3971	0.85	+0.3
4,007,217	-		GFF3971	0.85	-0.5
4,007,221	+		GFF3971	0.86	+0.1
4,007,226	+		GFF3971	0.87	-0.2
4,007,247	-		GFF3971	0.90	-0.5
4,007,265	-				+0.1
4,007,290	-				-1.4
4,007,294	+				+0.6
4,007,311	+				-0.5
4,007,312	+				+0.7
4,007,312	+				-0.5
4,007,312	+				+0.0
4,007,312	+				-2.1
4,007,312	+				+0.6
4,007,312	+				+0.5
4,007,313	-				-0.1
4,007,319	-				+0.2
4,007,320	-				+0.1
4,007,380	+		GFF3972	0.26	-0.5
4,007,391	+		GFF3972	0.31	+1.1
4,007,396	+		GFF3972	0.33	+0.8
4,007,400	+		GFF3972	0.35	+0.6
4,007,408	-		GFF3972	0.39	-1.3
4,007,408	-		GFF3972	0.39	-1.2
4,007,410	+		GFF3972	0.39	-0.2
4,007,412	-		GFF3972	0.40	+0.5
4,007,413	-		GFF3972	0.41	-0.8
4,007,418	-		GFF3972	0.43	-0.2
4,007,431	+		GFF3972	0.49	+0.3
4,007,439	-		GFF3972	0.52	+1.0
4,007,439	-		GFF3972	0.52	-0.5
4,007,467	+		GFF3972	0.64	-1.1
4,007,500	-		GFF3972	0.79	-1.5
4,007,512	+		GFF3972	0.84	+0.1
4,007,512	+		GFF3972	0.84	-0.4
4,007,513	-		GFF3972	0.85	-0.1
4,007,520	-		GFF3972	0.88	+0.4
4,007,525	-				-1.2
4,007,541	+				-0.7
4,007,541	+				+1.0
4,007,541	+				+0.6
4,007,541	+				+0.4
4,007,548	-				-1.2
4,007,549	-				+1.1
4,007,554	+				-1.1
4,007,554	+				+0.4
4,007,554	+				-0.2
4,007,557	-				-0.1
4,007,560	+				-1.8
4,007,562	-				-0.7
4,007,562	-				-0.7
4,007,562	-				+0.2
4,007,563	-				-1.8
4,007,568	-				+0.1
4,007,568	-				-2.5
4,007,583	-				+0.3
4,007,589	-				-1.9
4,007,618	+		GFF3973	0.11	-1.2
4,007,621	-		GFF3973	0.11	-0.9
4,007,630	-		GFF3973	0.13	-0.6