Strain Fitness in Sphingobium sp. HT1-2 around GFF3961

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,000,320	-				+1.7
4,000,320	-				-0.4
4,000,320	-				-1.1
4,000,320	-				-2.2
4,000,320	-				-0.1
4,000,320	-				-0.8
4,000,320	-				+0.1
4,000,320	-				-0.5
4,000,320	-				-2.2
4,000,320	-				+0.1
4,000,322	+				-0.4
4,000,322	+				-0.1
4,000,322	+				+0.4
4,000,325	-				+0.2
4,000,325	-				-0.5
4,000,338	-		GFF3959	0.12	+1.4
4,000,339	-		GFF3959	0.12	-0.6
4,000,361	-		GFF3959	0.17	-1.9
4,000,379	+		GFF3959	0.20	-1.3
4,000,387	-		GFF3959	0.22	-0.8
4,000,392	-		GFF3959	0.23	-0.9
4,000,400	+		GFF3959	0.24	+0.1
4,000,400	+		GFF3959	0.24	+0.2
4,000,408	+		GFF3959	0.26	+0.7
4,000,412	-		GFF3959	0.27	-0.1
4,000,415	+		GFF3959	0.28	+0.5
4,000,423	+		GFF3959	0.29	+1.2
4,000,423	-		GFF3959	0.29	-0.2
4,000,425	+		GFF3959	0.30	-1.7
4,000,431	-		GFF3959	0.31	-0.4
4,000,431	-		GFF3959	0.31	+0.6
4,000,454	+		GFF3959	0.35	+0.5
4,000,454	+		GFF3959	0.35	-0.6
4,000,454	+		GFF3959	0.35	+0.2
4,000,454	+		GFF3959	0.35	-0.3
4,000,454	+		GFF3959	0.35	+0.5
4,000,454	+		GFF3959	0.35	+1.6
4,000,454	+		GFF3959	0.35	-0.2
4,000,454	+		GFF3959	0.35	+0.8
4,000,454	+		GFF3959	0.35	+1.2
4,000,455	-		GFF3959	0.36	+0.5
4,000,455	-		GFF3959	0.36	+0.4
4,000,462	-		GFF3959	0.37	-0.5
4,000,501	+		GFF3959	0.45	-0.0
4,000,509	-		GFF3959	0.46	-1.2
4,000,509	-		GFF3959	0.46	-1.9
4,000,510	-		GFF3959	0.47	+0.4
4,000,513	+		GFF3959	0.47	+0.2
4,000,524	-		GFF3959	0.49	-1.2
4,000,549	+		GFF3959	0.54	+0.6
4,000,549	+		GFF3959	0.54	+0.3
4,000,549	+		GFF3959	0.54	-1.2
4,000,549	+		GFF3959	0.54	+0.5
4,000,549	+		GFF3959	0.54	+1.0
4,000,551	+		GFF3959	0.55	+0.0
4,000,557	-		GFF3959	0.56	+0.7
4,000,557	-		GFF3959	0.56	+0.2
4,000,557	-		GFF3959	0.56	+0.2
4,000,557	-		GFF3959	0.56	+0.6
4,000,557	-		GFF3959	0.56	+0.4
4,000,572	+		GFF3959	0.59	-0.0
4,000,572	+		GFF3959	0.59	-0.7
4,000,578	+		GFF3959	0.60	-1.9
4,000,591	+		GFF3959	0.63	+0.6
4,000,591	+		GFF3959	0.63	-0.8
4,000,591	+		GFF3959	0.63	-0.5
4,000,612	+		GFF3959	0.67	-0.2
4,000,617	+		GFF3959	0.68	-0.9
4,000,639	+		GFF3959	0.72	-1.2
4,000,647	-		GFF3959	0.74	-1.2
4,000,685	+		GFF3959	0.82	-0.7
4,000,685	+		GFF3959	0.82	+0.1
4,000,708	-		GFF3959	0.86	+0.6
4,000,708	-		GFF3959	0.86	+1.1
4,000,730	+				-0.3
4,000,738	-				-0.2
4,000,738	-				-0.7
4,000,738	-				-1.1
4,000,738	-				+0.6
4,000,755	+				+0.8
4,000,779	+				+0.0
4,000,795	-				+0.5
4,000,804	+				-1.1
4,000,809	+				-0.0
4,000,817	+				-0.4
4,000,837	+				+0.5
4,000,837	+				+0.5
4,000,837	+				-0.1
4,000,837	+				+0.4
4,000,837	+				-1.7
4,000,837	+				-0.9
4,000,837	+				-0.4
4,000,837	+				-0.4
4,000,837	+				+0.6
4,000,837	+				-0.4
4,000,842	+				-0.4
4,000,845	-				-1.0
4,000,845	-				-0.4
4,000,845	-				-0.3
4,000,845	-				+0.5
4,000,845	-				+0.8
4,000,845	-				-0.4
4,000,845	-				-0.2
4,000,845	-				+0.1
4,000,845	-				+0.3
4,000,845	-				+0.2
4,000,847	+				-0.8
4,000,847	+				-1.6
4,000,847	+				+0.8
4,000,847	+				-0.4
4,000,850	-				-0.1
4,000,850	-				+0.6
4,000,852	+				-0.4
4,000,855	-				-0.2
4,000,855	-				-0.1
4,000,855	-				-1.5
4,000,865	+				+0.8
4,000,865	+				+0.6
4,000,868	-				-2.6
4,000,873	-				-1.9
4,000,873	-				+0.4
4,000,873	-				+0.4
4,000,886	+				+0.2
4,000,915	+				+0.2
4,000,925	-				-2.5
4,000,935	+				+0.6
4,000,945	+				+0.9
4,000,964	+				+0.8
4,000,978	-				-0.2
4,000,982	+				+1.6
4,000,990	-				+0.2
4,000,990	-				-1.0
4,000,992	+				-1.2
4,001,000	-				+0.8
4,001,038	-				+0.6
4,001,043	+				+1.0
4,001,043	+				-0.4
4,001,048	+				-1.5
4,001,049	+				+0.3
4,001,049	-				+1.6
4,001,051	-				-1.2
4,001,051	-				-0.4
4,001,055	+				-0.6
4,001,056	-				+0.3
4,001,057	-				-0.5
4,001,069	+				-2.2
4,001,082	+				-0.8
4,001,091	-				-0.4
4,001,106	-				+0.2
4,001,106	-				+0.1
4,001,106	-				+0.6
4,001,110	+				+1.0
4,001,110	+				+0.2
4,001,110	-				-0.5
4,001,111	+				+1.3
4,001,111	+				+0.4
4,001,121	+				-1.2
4,001,128	+		GFF3960	0.11	-0.3
4,001,128	+		GFF3960	0.11	-1.6
4,001,128	+		GFF3960	0.11	+1.7
4,001,128	+		GFF3960	0.11	+0.1
4,001,128	+		GFF3960	0.11	-1.1
4,001,128	+		GFF3960	0.11	+0.1
4,001,128	+		GFF3960	0.11	+0.2
4,001,131	-		GFF3960	0.12	+0.7
4,001,135	-		GFF3960	0.14	+0.4
4,001,136	-		GFF3960	0.15	+1.2
4,001,136	-		GFF3960	0.15	+1.4
4,001,136	-		GFF3960	0.15	+0.2
4,001,136	-		GFF3960	0.15	-1.2
4,001,136	-		GFF3960	0.15	-1.9
4,001,136	-		GFF3960	0.15	+0.2
4,001,136	-		GFF3960	0.15	-0.0
4,001,143	+		GFF3960	0.18	+0.2
4,001,158	+		GFF3960	0.25	-0.1
4,001,158	+		GFF3960	0.25	-0.6
4,001,192	+		GFF3960	0.40	+1.0
4,001,205	+		GFF3960	0.46	-0.3
4,001,205	+		GFF3960	0.46	-1.3
4,001,205	+		GFF3960	0.46	-0.3
4,001,213	-		GFF3960	0.50	-0.6
4,001,213	-		GFF3960	0.50	-0.4
4,001,214	+		GFF3960	0.50	+0.0
4,001,235	+		GFF3960	0.60	+0.2
4,001,240	+		GFF3960	0.62	+0.3
4,001,244	-		GFF3960	0.64	-0.2
4,001,248	-		GFF3960	0.66	-1.9
4,001,248	-		GFF3960	0.66	-0.8
4,001,250	+		GFF3960	0.67	-0.2
4,001,251	+		GFF3960	0.67	-0.5
4,001,253	-		GFF3960	0.68	+1.6
4,001,253	-		GFF3960	0.68	+0.6
4,001,258	-		GFF3960	0.70	+0.3
4,001,266	+		GFF3960	0.74	-0.6
4,001,266	+		GFF3960	0.74	+0.3
4,001,271	+		GFF3960	0.76	-1.6
4,001,286	+		GFF3960	0.83	-1.4
4,001,294	-		GFF3960	0.87	-0.2
4,001,323	+				-0.7
4,001,324	+				-0.5
4,001,324	+				-0.4
4,001,324	+				-1.3
4,001,329	+				-1.8
4,001,337	-				-0.1
4,001,371	+		GFF3961	0.15	-0.2
4,001,398	-		GFF3961	0.23	+1.2
4,001,418	+		GFF3961	0.29	-2.1
4,001,420	-		GFF3961	0.29	-0.6
4,001,420	-		GFF3961	0.29	-0.2
4,001,426	-		GFF3961	0.31	-0.9
4,001,441	+		GFF3961	0.35	+1.3
4,001,441	+		GFF3961	0.35	-0.0
4,001,456	+		GFF3961	0.40	-1.3
4,001,465	-		GFF3961	0.42	+0.2
4,001,465	-		GFF3961	0.42	-0.6
4,001,475	+		GFF3961	0.45	-1.5
4,001,475	+		GFF3961	0.45	+0.9
4,001,480	+		GFF3961	0.47	+0.7
4,001,482	+		GFF3961	0.47	-0.2
4,001,482	+		GFF3961	0.47	-2.2
4,001,483	-		GFF3961	0.48	-0.7
4,001,483	-		GFF3961	0.48	-0.3
4,001,490	-		GFF3961	0.50	-0.3
4,001,490	-		GFF3961	0.50	-0.4
4,001,500	+		GFF3961	0.52	+0.5
4,001,500	+		GFF3961	0.52	+0.6
4,001,500	+		GFF3961	0.52	+1.5
4,001,508	-		GFF3961	0.55	+0.1
4,001,508	-		GFF3961	0.55	-1.1
4,001,510	+		GFF3961	0.55	+1.0
4,001,510	+		GFF3961	0.55	+0.5
4,001,510	+		GFF3961	0.55	-1.1
4,001,510	+		GFF3961	0.55	+0.5
4,001,510	+		GFF3961	0.55	-0.2
4,001,517	+		GFF3961	0.57	-0.9
4,001,517	+		GFF3961	0.57	+0.3
4,001,518	-		GFF3961	0.58	+0.4
4,001,518	-		GFF3961	0.58	+0.2
4,001,529	+		GFF3961	0.61	-0.2
4,001,550	-		GFF3961	0.67	-2.3
4,001,552	-		GFF3961	0.68	-0.3
4,001,556	+		GFF3961	0.69	-1.5
4,001,556	+		GFF3961	0.69	+0.0
4,001,562	+		GFF3961	0.70	-0.9
4,001,562	+		GFF3961	0.70	-0.8
4,001,562	-		GFF3961	0.70	-0.1
4,001,570	-		GFF3961	0.73	-0.4
4,001,570	-		GFF3961	0.73	+1.5
4,001,578	+		GFF3961	0.75	+0.3
4,001,586	-		GFF3961	0.77	+0.3
4,001,586	-		GFF3961	0.77	+1.0
4,001,593	-		GFF3961	0.79	+1.0
4,001,603	+		GFF3961	0.82	-1.2
4,001,620	+		GFF3961	0.87	-0.5
4,001,646	+				-0.5
4,001,648	-				+0.6
4,001,653	-				-0.4
4,001,660	-				-0.0
4,001,666	-				-2.3
4,001,689	+				+0.2
4,001,709	+				+0.4
4,001,709	+				-0.6
4,001,734	-		GFF3962	0.11	-0.1
4,001,742	-		GFF3962	0.13	-0.0
4,001,770	+		GFF3962	0.20	+0.1
4,001,783	+		GFF3962	0.23	-0.4
4,001,783	+		GFF3962	0.23	-1.9
4,001,783	+		GFF3962	0.23	+1.6
4,001,783	+		GFF3962	0.23	-0.9
4,001,783	+		GFF3962	0.23	-0.5
4,001,783	+		GFF3962	0.23	-0.2
4,001,783	+		GFF3962	0.23	+0.3
4,001,783	+		GFF3962	0.23	+0.2
4,001,783	+		GFF3962	0.23	+1.7
4,001,783	+		GFF3962	0.23	+1.0
4,001,783	-		GFF3962	0.23	+0.4
4,001,791	-		GFF3962	0.25	+0.8
4,001,791	-		GFF3962	0.25	+0.4
4,001,791	-		GFF3962	0.25	-0.3
4,001,791	-		GFF3962	0.25	+1.5
4,001,791	-		GFF3962	0.25	-0.4
4,001,791	-		GFF3962	0.25	+0.6
4,001,791	-		GFF3962	0.25	-0.3
4,001,791	-		GFF3962	0.25	+0.1
4,001,793	+		GFF3962	0.26	-0.6
4,001,793	+		GFF3962	0.26	-0.7
4,001,793	+		GFF3962	0.26	+1.0
4,001,793	+		GFF3962	0.26	-1.8
4,001,803	-		GFF3962	0.28	+0.9
4,001,810	-		GFF3962	0.30	-1.1
4,001,820	-		GFF3962	0.32	-0.3
4,001,823	+		GFF3962	0.33	+0.2
4,001,831	-		GFF3962	0.35	+0.1
4,001,831	-		GFF3962	0.35	+0.7
4,001,836	-		GFF3962	0.36	+0.1
4,001,836	-		GFF3962	0.36	-1.2
4,001,838	+		GFF3962	0.37	-1.2
4,001,838	+		GFF3962	0.37	+0.8
4,001,838	+		GFF3962	0.37	+1.3
4,001,844	+		GFF3962	0.38	+0.1
4,001,845	+		GFF3962	0.39	-1.0
4,001,846	-		GFF3962	0.39	-0.1
4,001,853	-		GFF3962	0.40	+0.1
4,001,853	-		GFF3962	0.40	+0.4
4,001,853	-		GFF3962	0.40	+0.3
4,001,853	-		GFF3962	0.40	+0.3
4,001,869	+		GFF3962	0.44	+0.4
4,001,874	-		GFF3962	0.46	-0.8
4,001,876	-		GFF3962	0.46	+1.0
4,001,896	+		GFF3962	0.51	+1.4
4,001,904	-		GFF3962	0.53	+0.8
4,001,909	-		GFF3962	0.54	-0.4
4,001,909	-		GFF3962	0.54	+0.3
4,001,922	-		GFF3962	0.58	-0.9
4,001,939	+		GFF3962	0.62	+0.7
4,001,960	-		GFF3962	0.67	+0.2
4,001,966	+		GFF3962	0.68	-0.2
4,001,969	-		GFF3962	0.69	-0.1
4,001,972	+		GFF3962	0.70	+0.1
4,001,995	-		GFF3962	0.76	-2.0
4,002,016	-		GFF3962	0.81	-0.6
4,002,031	+		GFF3962	0.84	+0.7
4,002,034	-		GFF3962	0.85	-1.4
4,002,039	-		GFF3962	0.86	-2.1
4,002,039	-		GFF3962	0.86	-0.3
4,002,039	-		GFF3962	0.86	-0.9
4,002,043	+		GFF3962	0.87	+0.7
4,002,048	+		GFF3962	0.89	+0.6
4,002,049	+		GFF3962	0.89	-1.4
4,002,049	-		GFF3962	0.89	-0.4
4,002,051	-		GFF3962	0.89	+0.0
4,002,051	-		GFF3962	0.89	+0.2
4,002,061	-				+0.4
4,002,063	+				-0.5
4,002,070	+				-0.6
4,002,075	+				+0.1
4,002,078	-				-0.7
4,002,083	-				+0.6
4,002,083	-				+0.1
4,002,083	-				+0.6
4,002,108	+				-1.2
4,002,108	+				-0.9
4,002,108	+				+0.7
4,002,108	+				-0.1
4,002,108	+				+1.3
4,002,112	+				+0.6
4,002,116	-				+0.4
4,002,116	-				-0.4
4,002,116	-				+0.1
4,002,116	-				-0.4
4,002,116	-				+2.6
4,002,125	+				-1.6
4,002,132	+				+0.9
4,002,132	-				-1.7
4,002,171	-				-0.8
4,002,181	+				-1.7
4,002,186	+				-2.4
4,002,189	-				+1.2
4,002,195	+				+0.2
4,002,202	+				-0.2
4,002,241	+				+0.5
4,002,243	-				+0.6
4,002,245	+				-0.9
4,002,248	-				-1.5
4,002,264	+				+0.1
4,002,264	+				-0.0
4,002,272	-				+0.1
4,002,272	-				-1.9
4,002,272	-				+0.4
4,002,272	-				+0.1
4,002,272	-				+0.3
4,002,308	-				+1.5
4,002,318	+				-2.1
4,002,318	+				+0.0
4,002,318	+				-0.6
4,002,323	+				-0.5
4,002,323	+				+0.2
4,002,323	+				-0.0
4,002,323	+				-0.6
4,002,323	+				-0.1
4,002,323	+				-0.8
4,002,323	+				-0.8
4,002,323	+				+1.2
4,002,326	-				+0.6
4,002,326	-				+0.6
4,002,331	-				-0.8
4,002,331	-				+0.6
4,002,331	-				-0.5
4,002,331	-				-1.8
4,002,331	-				-0.1
4,002,331	-				+1.0
4,002,331	-				+0.4
4,002,331	-				+0.9
4,002,342	+				-0.8
4,002,342	+				+0.1
4,002,348	+				-1.3
4,002,349	+				-1.9
4,002,350	-				-1.9
4,002,356	-				-0.1
4,002,356	-				+0.2
4,002,359	+				+0.7
4,002,392	+		GFF3963	0.11	+0.2
4,002,392	+		GFF3963	0.11	-1.8
4,002,392	+		GFF3963	0.11	-0.0
4,002,392	+		GFF3963	0.11	-0.1
4,002,392	+		GFF3963	0.11	+2.2
4,002,400	-		GFF3963	0.13	+0.0
4,002,420	+		GFF3963	0.19	+0.3
4,002,441	+		GFF3963	0.25	-0.8
4,002,474	-		GFF3963	0.34	+0.1
4,002,474	-		GFF3963	0.34	-0.1
4,002,495	+		GFF3963	0.40	+0.8
4,002,506	+		GFF3963	0.43	+0.8
4,002,508	+		GFF3963	0.44	-0.9
4,002,508	+		GFF3963	0.44	+0.5
4,002,586	-		GFF3963	0.66	-2.6
4,002,619	+		GFF3963	0.75	+2.1
4,002,619	+		GFF3963	0.75	+0.4
4,002,627	-		GFF3963	0.77	-2.0
4,002,627	-		GFF3963	0.77	-0.4
4,002,627	-		GFF3963	0.77	+0.4
4,002,657	+		GFF3963	0.86	-0.1