Strain Fitness in Sphingobium sp. HT1-2 around GFF3950

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,987,867	+		GFF3948	0.84	-1.1
3,987,875	-		GFF3948	0.85	+0.3
3,987,919	+		GFF3948	0.89	-0.4
3,987,919	+		GFF3948	0.89	+0.6
3,987,924	+		GFF3948	0.89	+1.1
3,987,927	-		GFF3948	0.89	+1.1
3,987,929	+		GFF3948	0.89	-0.9
3,987,932	-		GFF3948	0.90	-0.7
3,987,932	-		GFF3948	0.90	+0.9
3,987,932	-		GFF3948	0.90	+0.2
3,987,932	-		GFF3948	0.90	+0.3
3,987,937	-				+1.4
3,987,970	-				+0.9
3,987,982	+				-0.5
3,987,982	+				-0.2
3,987,982	+				+1.3
3,987,982	+				-1.2
3,987,982	+				+0.4
3,987,982	+				+1.2
3,987,990	-				-1.2
3,987,990	-				-0.6
3,987,990	-				-0.5
3,987,990	-				-1.0
3,987,990	-				-0.0
3,987,990	-				+0.3
3,987,990	-				-0.3
3,987,990	-				+0.6
3,987,996	+				-2.0
3,988,002	+				-0.5
3,988,010	-				-0.9
3,988,016	+				-0.4
3,988,033	+				+0.1
3,988,035	+				-1.7
3,988,035	+				-0.1
3,988,039	-				-0.1
3,988,043	-				+1.0
3,988,051	+				-0.6
3,988,051	+				-1.2
3,988,059	-				+0.0
3,988,061	-				+0.9
3,988,061	-				-1.7
3,988,069	-				-0.4
3,988,104	-				+0.3
3,988,116	-				-0.8
3,988,120	+				+0.9
3,988,120	+				-0.1
3,988,120	+				-0.7
3,988,122	+				-1.2
3,988,122	+				-1.5
3,988,122	+				-0.8
3,988,122	+				-0.2
3,988,128	-				+1.0
3,988,128	-				-0.9
3,988,128	-				+1.2
3,988,128	-				+0.3
3,988,128	-				-0.7
3,988,128	-				+1.6
3,988,128	-				-0.4
3,988,128	-				-0.9
3,988,140	+				-1.4
3,988,140	+				-1.4
3,988,202	+		GFF3949	0.16	+0.4
3,988,245	+		GFF3949	0.23	+0.3
3,988,253	-		GFF3949	0.24	+1.6
3,988,253	-		GFF3949	0.24	-0.2
3,988,253	-		GFF3949	0.24	-0.4
3,988,253	-		GFF3949	0.24	-1.4
3,988,253	-		GFF3949	0.24	-2.5
3,988,485	-		GFF3949	0.64	+0.2
3,988,570	+		GFF3949	0.78	-1.7
3,988,570	+		GFF3949	0.78	+0.8
3,988,578	-		GFF3949	0.80	+0.6
3,988,578	-		GFF3949	0.80	-0.6
3,988,578	-		GFF3949	0.80	+0.2
3,988,578	-		GFF3949	0.80	+0.8
3,988,578	-		GFF3949	0.80	-2.1
3,988,578	-		GFF3949	0.80	-0.7
3,988,601	-		GFF3949	0.84	-0.1
3,988,627	+		GFF3949	0.88	-0.4
3,988,635	-		GFF3949	0.89	+0.0
3,988,635	-		GFF3949	0.89	+1.1
3,988,645	-				+0.4
3,988,703	-				+0.7
3,988,723	+				+1.0
3,988,775	+				-2.0
3,988,846	-				-0.9
3,988,851	-				+0.1
3,988,853	-				-0.4
3,988,858	-				+0.4
3,988,858	-				+0.8
3,988,858	-				+0.8
3,988,927	+				+1.5
3,988,927	+				-0.4
3,988,927	+				-0.4
3,988,935	-		GFF3950	0.10	-0.8
3,988,938	+		GFF3950	0.10	-1.2
3,988,938	+		GFF3950	0.10	+0.3
3,988,963	+		GFF3950	0.13	-0.1
3,988,991	+		GFF3950	0.15	-0.6
3,988,991	+		GFF3950	0.15	+0.0
3,989,039	+		GFF3950	0.19	-1.7
3,989,049	+		GFF3950	0.20	-0.3
3,989,049	+		GFF3950	0.20	-1.0
3,989,049	+		GFF3950	0.20	+0.9
3,989,049	+		GFF3950	0.20	-0.6
3,989,053	+		GFF3950	0.20	+0.5
3,989,054	+		GFF3950	0.20	+1.6
3,989,054	+		GFF3950	0.20	-0.9
3,989,057	-		GFF3950	0.20	+0.8
3,989,057	-		GFF3950	0.20	+0.7
3,989,057	-		GFF3950	0.20	+0.3
3,989,062	-		GFF3950	0.21	-1.9
3,989,062	-		GFF3950	0.21	+0.1
3,989,062	-		GFF3950	0.21	-1.6
3,989,086	+		GFF3950	0.23	-1.0
3,989,105	+		GFF3950	0.24	+1.6
3,989,113	-		GFF3950	0.25	-0.6
3,989,116	+		GFF3950	0.25	+0.1
3,989,116	+		GFF3950	0.25	-0.4
3,989,116	+		GFF3950	0.25	+0.2
3,989,117	+		GFF3950	0.25	-0.2
3,989,120	-		GFF3950	0.26	-0.2
3,989,120	-		GFF3950	0.26	-0.3
3,989,120	-		GFF3950	0.26	+0.3
3,989,124	-		GFF3950	0.26	-0.9
3,989,124	-		GFF3950	0.26	-1.6
3,989,124	-		GFF3950	0.26	+0.3
3,989,124	-		GFF3950	0.26	+0.1
3,989,125	-		GFF3950	0.26	+0.1
3,989,152	+		GFF3950	0.28	-0.6
3,989,164	+		GFF3950	0.29	+0.6
3,989,164	+		GFF3950	0.29	-0.6
3,989,165	-		GFF3950	0.29	+0.5
3,989,171	+		GFF3950	0.30	+0.3
3,989,176	+		GFF3950	0.30	+0.4
3,989,181	+		GFF3950	0.31	-0.6
3,989,186	+		GFF3950	0.31	-0.8
3,989,186	+		GFF3950	0.31	-0.7
3,989,186	+		GFF3950	0.31	-0.0
3,989,186	+		GFF3950	0.31	-0.3
3,989,189	-		GFF3950	0.31	+0.5
3,989,194	-		GFF3950	0.32	-1.4
3,989,194	-		GFF3950	0.32	+0.6
3,989,194	-		GFF3950	0.32	-0.1
3,989,197	+		GFF3950	0.32	-0.7
3,989,249	-		GFF3950	0.37	-1.3
3,989,254	-		GFF3950	0.37	+1.0
3,989,265	-		GFF3950	0.38	-1.2
3,989,270	+		GFF3950	0.38	+0.6
3,989,280	+		GFF3950	0.39	-1.3
3,989,283	-		GFF3950	0.39	-0.7
3,989,284	+		GFF3950	0.39	+0.0
3,989,289	+		GFF3950	0.40	+0.6
3,989,294	+		GFF3950	0.40	-1.7
3,989,343	+		GFF3950	0.44	+0.9
3,989,373	+		GFF3950	0.47	+0.6
3,989,377	+		GFF3950	0.47	-2.4
3,989,377	+		GFF3950	0.47	-0.2
3,989,377	+		GFF3950	0.47	-0.4
3,989,377	+		GFF3950	0.47	-0.2
3,989,377	+		GFF3950	0.47	-0.3
3,989,377	+		GFF3950	0.47	-1.0
3,989,377	+		GFF3950	0.47	+0.2
3,989,377	+		GFF3950	0.47	+0.3
3,989,377	+		GFF3950	0.47	+0.2
3,989,377	+		GFF3950	0.47	+0.3
3,989,377	+		GFF3950	0.47	-2.0
3,989,377	+		GFF3950	0.47	+0.6
3,989,377	+		GFF3950	0.47	+0.5
3,989,377	+		GFF3950	0.47	+0.2
3,989,377	+		GFF3950	0.47	-0.7
3,989,377	+		GFF3950	0.47	-0.7
3,989,377	+		GFF3950	0.47	+0.1
3,989,377	+		GFF3950	0.47	-0.4
3,989,377	+		GFF3950	0.47	+0.4
3,989,377	+		GFF3950	0.47	+1.0
3,989,377	+		GFF3950	0.47	+0.8
3,989,378	+		GFF3950	0.47	-0.0
3,989,381	-		GFF3950	0.48	-1.5
3,989,382	+		GFF3950	0.48	-1.9
3,989,385	-		GFF3950	0.48	+0.2
3,989,385	-		GFF3950	0.48	+0.9
3,989,385	-		GFF3950	0.48	-0.8
3,989,385	-		GFF3950	0.48	-0.5
3,989,385	-		GFF3950	0.48	+0.3
3,989,385	-		GFF3950	0.48	-0.2
3,989,385	-		GFF3950	0.48	-0.9
3,989,385	-		GFF3950	0.48	-0.1
3,989,385	-		GFF3950	0.48	-0.7
3,989,385	-		GFF3950	0.48	+0.5
3,989,385	-		GFF3950	0.48	-0.4
3,989,385	-		GFF3950	0.48	-0.3
3,989,385	-		GFF3950	0.48	+0.9
3,989,385	-		GFF3950	0.48	+0.1
3,989,385	-		GFF3950	0.48	-0.0
3,989,385	-		GFF3950	0.48	+0.2
3,989,386	-		GFF3950	0.48	+0.1
3,989,395	-		GFF3950	0.49	-0.9
3,989,399	+		GFF3950	0.49	-0.1
3,989,401	+		GFF3950	0.49	-0.1
3,989,414	-		GFF3950	0.50	+0.1
3,989,414	-		GFF3950	0.50	+0.4
3,989,414	-		GFF3950	0.50	+0.7
3,989,414	-		GFF3950	0.50	+1.5
3,989,419	-		GFF3950	0.51	-2.0
3,989,428	+		GFF3950	0.52	-1.2
3,989,433	+		GFF3950	0.52	+1.0
3,989,433	+		GFF3950	0.52	-0.7
3,989,441	-		GFF3950	0.53	-1.2
3,989,447	-		GFF3950	0.53	-0.2
3,989,464	+		GFF3950	0.55	+1.3
3,989,469	+		GFF3950	0.55	-0.1
3,989,492	+		GFF3950	0.57	-1.3
3,989,497	+		GFF3950	0.57	+1.1
3,989,500	-		GFF3950	0.58	+0.4
3,989,525	+		GFF3950	0.60	+0.7
3,989,555	-		GFF3950	0.62	+0.5
3,989,555	-		GFF3950	0.62	-0.7
3,989,555	-		GFF3950	0.62	+0.9
3,989,558	+		GFF3950	0.62	+0.5
3,989,566	-		GFF3950	0.63	+0.2
3,989,575	-		GFF3950	0.64	-0.1
3,989,577	+		GFF3950	0.64	-1.0
3,989,593	+		GFF3950	0.65	-0.6
3,989,610	+		GFF3950	0.67	+0.2
3,989,610	+		GFF3950	0.67	+0.3
3,989,627	+		GFF3950	0.68	-0.4
3,989,627	+		GFF3950	0.68	+0.6
3,989,627	+		GFF3950	0.68	-0.5
3,989,635	-		GFF3950	0.69	-0.1
3,989,667	-		GFF3950	0.72	+1.2
3,989,671	-		GFF3950	0.72	+0.1
3,989,683	+		GFF3950	0.73	-1.3
3,989,683	+		GFF3950	0.73	+0.4
3,989,683	+		GFF3950	0.73	-0.2
3,989,683	+		GFF3950	0.73	+0.6
3,989,683	+		GFF3950	0.73	+0.6
3,989,683	+		GFF3950	0.73	-1.1
3,989,691	-		GFF3950	0.74	-0.2
3,989,691	-		GFF3950	0.74	-0.4
3,989,691	-		GFF3950	0.74	-0.6
3,989,691	-		GFF3950	0.74	+0.5
3,989,693	+		GFF3950	0.74	-0.1
3,989,698	+		GFF3950	0.74	-0.7
3,989,698	+		GFF3950	0.74	-1.1
3,989,754	-		GFF3950	0.79	-1.3
3,989,770	+		GFF3950	0.80	-0.3
3,989,772	-		GFF3950	0.80	-0.7
3,989,779	+		GFF3950	0.81	+0.2
3,989,784	-		GFF3950	0.81	-0.7
3,989,787	-		GFF3950	0.82	-0.4
3,989,800	+		GFF3950	0.83	-0.5
3,989,808	-		GFF3950	0.83	+0.3
3,989,808	-		GFF3950	0.83	-0.5
3,989,847	+		GFF3950	0.87	-0.1
3,989,847	+		GFF3950	0.87	+0.2
3,989,852	+		GFF3950	0.87	+0.8
3,989,855	-		GFF3950	0.87	-0.3
3,989,879	+		GFF3950	0.89	+0.1
3,989,914	-				+0.9
3,989,914	-				+0.4
3,989,916	-				+0.6
3,989,929	+				-0.7
3,989,940	+				-0.3
3,989,942	+				+0.2
3,989,942	+				-0.9
3,989,942	+				-0.7
3,989,942	+				+0.3
3,989,969	+				+0.4
3,989,969	+				+1.0
3,989,969	+				-0.3
3,989,969	+				+0.3
3,989,977	-				-2.2
3,989,977	-				-0.2
3,989,995	+				+0.1
3,989,998	+				-0.1
3,989,999	+				+0.7
3,989,999	+				-0.6
3,990,005	+				+0.6
3,990,007	-				-0.3
3,990,013	-				+0.0
3,990,013	-				-1.4
3,990,013	-				+0.7
3,990,026	-				-2.1
3,990,059	+				+0.8
3,990,098	-				-0.0
3,990,166	+				-0.0
3,990,176	+				-0.4
3,990,211	+				+0.1
3,990,211	+				+0.2
3,990,211	+				-0.9
3,990,211	+				-0.9
3,990,211	+				+0.3
3,990,211	+				-0.4
3,990,211	+				-1.7
3,990,211	+				-0.5
3,990,211	+				-0.4
3,990,211	+				-0.6
3,990,219	-				-0.7
3,990,219	-				-2.6
3,990,219	-				-0.4
3,990,219	-				+0.4
3,990,219	-				-2.7
3,990,219	-				-1.2
3,990,219	-				+1.2
3,990,278	+				+0.1
3,990,278	+				-1.9
3,990,278	+				+0.4
3,990,279	+				-0.8
3,990,285	+				-0.7
3,990,286	-				-2.4
3,990,295	+				-1.8
3,990,303	-				-1.3
3,990,310	-				-0.4
3,990,319	+				-0.3
3,990,326	+		GFF3951	0.10	-1.1
3,990,326	-		GFF3951	0.10	+0.2
3,990,326	-		GFF3951	0.10	-1.3
3,990,327	-		GFF3951	0.10	-1.6
3,990,327	-		GFF3951	0.10	-1.3
3,990,327	-		GFF3951	0.10	+0.0
3,990,331	+		GFF3951	0.10	-0.9
3,990,334	-		GFF3951	0.10	+0.0
3,990,334	-		GFF3951	0.10	-0.3
3,990,339	-		GFF3951	0.10	+0.3
3,990,350	+		GFF3951	0.11	-1.4
3,990,378	+		GFF3951	0.12	+0.2
3,990,378	+		GFF3951	0.12	-0.6
3,990,378	+		GFF3951	0.12	-2.0
3,990,379	-		GFF3951	0.12	+0.1
3,990,421	+		GFF3951	0.13	+0.1
3,990,421	+		GFF3951	0.13	+0.3
3,990,450	+		GFF3951	0.14	-0.1
3,990,481	-		GFF3951	0.15	-0.5
3,990,483	+		GFF3951	0.15	-0.6
3,990,538	-		GFF3951	0.17	-0.1
3,990,543	-		GFF3951	0.17	-0.3
3,990,546	+		GFF3951	0.17	+0.6
3,990,562	+		GFF3951	0.17	-0.0
3,990,567	+		GFF3951	0.18	-1.4
3,990,570	-		GFF3951	0.18	-0.9
3,990,599	-		GFF3951	0.19	-0.0
3,990,619	+		GFF3951	0.19	+0.3
3,990,646	+		GFF3951	0.20	-2.6
3,990,646	+		GFF3951	0.20	+0.4
3,990,646	+		GFF3951	0.20	+0.6
3,990,646	+		GFF3951	0.20	-1.1
3,990,654	-		GFF3951	0.20	-0.4
3,990,654	-		GFF3951	0.20	-1.2
3,990,654	-		GFF3951	0.20	-1.4
3,990,661	+		GFF3951	0.21	+0.6
3,990,661	+		GFF3951	0.21	-0.8
3,990,661	+		GFF3951	0.21	+0.3
3,990,661	+		GFF3951	0.21	+0.7
3,990,669	-		GFF3951	0.21	-0.4
3,990,679	+		GFF3951	0.21	-0.0
3,990,686	-		GFF3951	0.21	-0.4
3,990,686	-		GFF3951	0.21	-0.9
3,990,699	+		GFF3951	0.22	-1.1
3,990,713	+		GFF3951	0.22	-0.4
3,990,721	-		GFF3951	0.22	-0.8
3,990,725	-		GFF3951	0.23	-0.8
3,990,732	+		GFF3951	0.23	-1.5
3,990,743	+		GFF3951	0.23	+0.0
3,990,750	+		GFF3951	0.23	+1.2
3,990,775	+		GFF3951	0.24	-0.3
3,990,777	+		GFF3951	0.24	-0.2
3,990,785	-		GFF3951	0.24	+1.3
3,990,790	+		GFF3951	0.25	-0.5
3,990,790	+		GFF3951	0.25	+1.3
3,990,798	-		GFF3951	0.25	-0.9
3,990,817	-		GFF3951	0.25	+0.4
3,990,847	+		GFF3951	0.26	-1.3
3,990,855	-		GFF3951	0.27	-0.4
3,990,855	-		GFF3951	0.27	+0.7
3,990,884	-		GFF3951	0.28	-0.8
3,990,890	-		GFF3951	0.28	-1.5
3,990,894	+		GFF3951	0.28	+0.5
3,990,910	-		GFF3951	0.28	+0.1
3,990,920	-		GFF3951	0.29	-2.1
3,990,920	-		GFF3951	0.29	+0.6
3,990,920	-		GFF3951	0.29	-1.0
3,990,931	-		GFF3951	0.29	-1.8
3,990,941	-		GFF3951	0.29	-0.5
3,990,993	+		GFF3951	0.31	+0.1
3,990,993	+		GFF3951	0.31	-0.3
3,991,002	+		GFF3951	0.31	-0.6