Strain Fitness in Sphingobium sp. HT1-2 around GFF3943

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,979,510	-		GFF3941	0.51	-0.2
3,979,520	+		GFF3941	0.53	+1.0
3,979,520	+		GFF3941	0.53	-0.1
3,979,525	+		GFF3941	0.54	-0.7
3,979,525	+		GFF3941	0.54	+0.2
3,979,525	+		GFF3941	0.54	-1.9
3,979,530	+		GFF3941	0.55	-0.5
3,979,533	-		GFF3941	0.56	-2.2
3,979,533	-		GFF3941	0.56	-1.6
3,979,535	+		GFF3941	0.56	-0.4
3,979,535	+		GFF3941	0.56	-1.6
3,979,538	-		GFF3941	0.57	-0.7
3,979,538	-		GFF3941	0.57	-0.1
3,979,538	-		GFF3941	0.57	+0.9
3,979,538	-		GFF3941	0.57	+1.2
3,979,543	-		GFF3941	0.58	-0.4
3,979,545	+		GFF3941	0.58	-1.4
3,979,545	+		GFF3941	0.58	+0.6
3,979,545	+		GFF3941	0.58	+0.5
3,979,545	+		GFF3941	0.58	+0.3
3,979,545	+		GFF3941	0.58	+0.8
3,979,545	+		GFF3941	0.58	-0.8
3,979,553	-		GFF3941	0.60	+0.2
3,979,573	-		GFF3941	0.64	-0.9
3,979,587	+		GFF3941	0.67	+1.1
3,979,604	+		GFF3941	0.70	-1.7
3,979,604	+		GFF3941	0.70	-0.5
3,979,611	-		GFF3941	0.72	-0.1
3,979,611	-		GFF3941	0.72	-0.2
3,979,612	-		GFF3941	0.72	+0.6
3,979,612	-		GFF3941	0.72	+0.2
3,979,630	+		GFF3941	0.76	-1.6
3,979,631	+		GFF3941	0.76	+0.2
3,979,631	+		GFF3941	0.76	+1.4
3,979,631	+		GFF3941	0.76	+2.1
3,979,631	+		GFF3941	0.76	+0.1
3,979,631	+		GFF3941	0.76	-0.6
3,979,631	+		GFF3941	0.76	+0.3
3,979,631	+		GFF3941	0.76	-0.9
3,979,631	+		GFF3941	0.76	+0.3
3,979,631	+		GFF3941	0.76	+1.4
3,979,631	+		GFF3941	0.76	-1.6
3,979,631	+		GFF3941	0.76	+0.7
3,979,631	+		GFF3941	0.76	-1.3
3,979,638	-		GFF3941	0.77	-1.8
3,979,638	-		GFF3941	0.77	-1.2
3,979,638	-		GFF3941	0.77	+0.7
3,979,638	-		GFF3941	0.77	-0.9
3,979,638	-		GFF3941	0.77	-2.8
3,979,638	-		GFF3941	0.77	-0.4
3,979,638	-		GFF3941	0.77	-0.1
3,979,638	-		GFF3941	0.77	-1.6
3,979,639	-		GFF3941	0.78	-0.1
3,979,639	-		GFF3941	0.78	-1.4
3,979,639	-		GFF3941	0.78	-0.0
3,979,639	-		GFF3941	0.78	+0.2
3,979,639	-		GFF3941	0.78	+0.0
3,979,639	-		GFF3941	0.78	+0.7
3,979,639	-		GFF3941	0.78	+0.5
3,979,639	-		GFF3941	0.78	+0.0
3,979,639	-		GFF3941	0.78	+0.4
3,979,639	-		GFF3941	0.78	+0.1
3,979,639	-		GFF3941	0.78	+1.5
3,979,639	-		GFF3941	0.78	+0.2
3,979,639	-		GFF3941	0.78	+0.5
3,979,639	-		GFF3941	0.78	-1.5
3,979,640	+		GFF3941	0.78	-0.2
3,979,648	-		GFF3941	0.80	-1.5
3,979,648	-		GFF3941	0.80	+1.0
3,979,661	-		GFF3941	0.82	-1.0
3,979,661	-		GFF3941	0.82	-0.4
3,979,666	+		GFF3941	0.83	-0.4
3,979,674	+		GFF3941	0.85	-1.8
3,979,674	+		GFF3941	0.85	+0.6
3,979,682	-		GFF3941	0.87	-2.6
3,979,707	-				-1.5
3,979,710	+				-0.4
3,979,710	+				-1.4
3,979,710	+				+1.0
3,979,710	+				-0.0
3,979,710	+				-0.9
3,979,710	+				-2.0
3,979,710	+				-0.2
3,979,710	+				+0.9
3,979,710	+				+0.1
3,979,710	+				+1.2
3,979,718	-				+0.3
3,979,718	-				-0.7
3,979,718	-				+0.2
3,979,718	-				+1.5
3,979,718	-				-0.9
3,979,718	-				-0.1
3,979,718	-				+0.4
3,979,718	-				-2.9
3,979,718	-				-1.4
3,979,718	-				+1.3
3,979,734	-				-1.5
3,979,781	-				+0.5
3,979,788	+				-0.6
3,979,796	-				+0.7
3,979,796	-				-0.5
3,979,804	-				+0.5
3,980,401	+				+0.3
3,980,401	+				+0.1
3,980,401	+				-0.1
3,980,409	-				-0.5
3,980,445	+				+0.0
3,980,455	+				-1.2
3,980,455	+				-0.7
3,980,455	+				-2.1
3,980,455	+				+1.0
3,980,463	-				-0.7
3,980,463	-				-0.0
3,980,463	-				+0.4
3,980,463	-				-1.2
3,980,478	-				+1.5
3,980,529	+		GFF3943	0.12	+0.7
3,980,544	-		GFF3943	0.15	-2.2
3,980,579	+		GFF3943	0.21	+0.2
3,980,582	-		GFF3943	0.21	-0.1
3,980,582	-		GFF3943	0.21	-1.0
3,980,604	+		GFF3943	0.25	-0.2
3,980,634	-		GFF3943	0.30	+0.5
3,980,639	-		GFF3943	0.31	-0.3
3,980,668	-		GFF3943	0.36	-1.6
3,980,687	+		GFF3943	0.40	-1.0
3,980,688	+		GFF3943	0.40	+0.6
3,980,709	-		GFF3943	0.43	-0.8
3,980,728	+		GFF3943	0.47	+0.2
3,980,728	+		GFF3943	0.47	-2.1
3,980,760	+		GFF3943	0.52	-1.1
3,980,826	-		GFF3943	0.64	-1.4
3,980,826	-		GFF3943	0.64	+0.9
3,980,890	-		GFF3943	0.75	-2.1
3,980,895	-		GFF3943	0.75	+1.4
3,980,923	-		GFF3943	0.80	-0.0
3,980,931	+		GFF3943	0.82	-0.0
3,980,931	+		GFF3943	0.82	-2.4
3,980,939	-		GFF3943	0.83	+0.5
3,980,939	-		GFF3943	0.83	-0.7
3,980,939	-		GFF3943	0.83	+0.8
3,980,973	-		GFF3943	0.89	-0.6
3,980,987	-				+0.7
3,980,989	+				-0.2
3,980,997	-				-0.3
3,981,018	-				+0.4
3,981,020	-				-1.5
3,981,023	+				-0.7
3,981,046	+				+0.6
3,981,099	+				-0.2
3,981,133	-				-0.4
3,981,156	+				-0.2
3,981,176	+				+0.2
3,981,181	+				+0.2
3,981,181	+				+0.5
3,981,189	-		GFF3944	0.10	+1.2
3,981,189	-		GFF3944	0.10	+0.4
3,981,189	-		GFF3944	0.10	+0.6
3,981,189	-		GFF3944	0.10	-0.5
3,981,206	+		GFF3944	0.14	-0.8
3,981,212	+		GFF3944	0.15	-1.0
3,981,226	+		GFF3944	0.18	-0.6
3,981,228	+		GFF3944	0.18	-0.3
3,981,238	+		GFF3944	0.20	+0.6
3,981,240	+		GFF3944	0.21	+0.4
3,981,248	-		GFF3944	0.23	-2.2
3,981,261	-		GFF3944	0.25	-1.2
3,981,278	+		GFF3944	0.29	-0.4
3,981,285	+		GFF3944	0.30	+0.6
3,981,295	+		GFF3944	0.32	+0.4
3,981,339	+		GFF3944	0.42	-1.1
3,981,344	+		GFF3944	0.43	+0.2
3,981,347	-		GFF3944	0.44	-0.5
3,981,351	+		GFF3944	0.44	+1.4
3,981,353	+		GFF3944	0.45	+0.2
3,981,359	-		GFF3944	0.46	-2.3
3,981,361	+		GFF3944	0.46	-0.4
3,981,361	+		GFF3944	0.46	+0.4
3,981,377	+		GFF3944	0.50	-0.5
3,981,380	+		GFF3944	0.51	+1.7
3,981,385	-		GFF3944	0.52	-1.2
3,981,401	+		GFF3944	0.55	-1.7
3,981,425	+		GFF3944	0.60	-0.8
3,981,425	+		GFF3944	0.60	+0.4
3,981,435	+		GFF3944	0.62	-0.8
3,981,443	-		GFF3944	0.64	+0.6
3,981,444	-		GFF3944	0.64	-1.5
3,981,455	-		GFF3944	0.66	-1.7
3,981,466	+		GFF3944	0.69	+0.7
3,981,467	+		GFF3944	0.69	+0.3
3,981,467	+		GFF3944	0.69	+0.6
3,981,467	+		GFF3944	0.69	-0.0
3,981,473	-		GFF3944	0.70	+0.9
3,981,474	-		GFF3944	0.70	+0.6
3,981,474	-		GFF3944	0.70	+0.4
3,981,488	+		GFF3944	0.73	-0.8
3,981,488	+		GFF3944	0.73	+0.2
3,981,488	+		GFF3944	0.73	-0.1
3,981,488	+		GFF3944	0.73	-0.6
3,981,488	+		GFF3944	0.73	+0.2
3,981,488	+		GFF3944	0.73	+1.0
3,981,488	+		GFF3944	0.73	-0.9
3,981,488	+		GFF3944	0.73	+1.5
3,981,495	+		GFF3944	0.75	+1.0
3,981,496	-		GFF3944	0.75	+0.4
3,981,496	-		GFF3944	0.75	-0.5
3,981,496	-		GFF3944	0.75	+0.9
3,981,503	-		GFF3944	0.77	+0.1
3,981,513	-		GFF3944	0.79	-0.1
3,981,518	-		GFF3944	0.80	-0.2
3,981,551	-		GFF3944	0.87	+0.7
3,981,551	-		GFF3944	0.87	-0.7
3,981,551	-		GFF3944	0.87	-0.5
3,981,577	+				-0.2
3,981,590	+				-0.3
3,981,595	+				+0.3
3,981,600	+				+0.8
3,981,605	+				-0.8
3,981,607	+				+0.3
3,981,609	+				+0.2
3,981,609	+				+1.5
3,981,613	-				-0.1
3,981,614	+				-0.2
3,981,622	-				+0.1
3,981,627	-				-0.6
3,981,671	-				-1.0
3,981,694	-				-0.9
3,981,701	+				+0.9
3,981,701	+				-1.0
3,981,709	-				-0.4
3,981,721	-				-0.7
3,981,741	+				-2.3
3,981,748	+				-0.5
3,981,756	-				+0.9
3,981,758	+				+0.7
3,981,759	-				+0.9
3,981,765	-				-0.6
3,981,793	-				-0.9
3,981,840	+				+0.4
3,981,861	+				-0.1
3,981,869	-				-1.8
3,981,869	-				-0.6
3,981,886	-				-2.2