Strain Fitness in Sphingobium sp. HT1-2 around GFF3937

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,975,107	-		GFF3936	0.17	+0.0
3,975,110	+		GFF3936	0.17	-1.5
3,975,118	-		GFF3936	0.18	+0.9
3,975,118	-		GFF3936	0.18	+2.2
3,975,120	-		GFF3936	0.18	-0.6
3,975,163	-		GFF3936	0.22	+0.6
3,975,163	-		GFF3936	0.22	+0.6
3,975,173	-		GFF3936	0.23	+0.4
3,975,181	-		GFF3936	0.24	+0.4
3,975,198	-		GFF3936	0.26	+0.0
3,975,198	-		GFF3936	0.26	-0.0
3,975,206	+		GFF3936	0.27	-0.2
3,975,213	-		GFF3936	0.27	+0.5
3,975,214	-		GFF3936	0.28	+0.1
3,975,214	-		GFF3936	0.28	+0.2
3,975,216	+		GFF3936	0.28	-2.2
3,975,216	+		GFF3936	0.28	-0.0
3,975,216	+		GFF3936	0.28	+0.8
3,975,224	-		GFF3936	0.29	+0.3
3,975,224	-		GFF3936	0.29	-1.7
3,975,224	-		GFF3936	0.29	+0.4
3,975,224	-		GFF3936	0.29	-1.2
3,975,224	-		GFF3936	0.29	-1.6
3,975,224	-		GFF3936	0.29	-0.4
3,975,224	-		GFF3936	0.29	-0.6
3,975,224	-		GFF3936	0.29	+0.2
3,975,224	-		GFF3936	0.29	+0.2
3,975,224	-		GFF3936	0.29	-0.2
3,975,224	-		GFF3936	0.29	-1.4
3,975,224	-		GFF3936	0.29	-1.4
3,975,224	-		GFF3936	0.29	+1.3
3,975,228	+		GFF3936	0.29	-0.6
3,975,241	-		GFF3936	0.30	-1.7
3,975,248	+		GFF3936	0.31	+0.0
3,975,275	+		GFF3936	0.34	+1.2
3,975,291	-		GFF3936	0.35	-1.2
3,975,299	+		GFF3936	0.36	-0.4
3,975,307	-		GFF3936	0.37	+1.8
3,975,312	-		GFF3936	0.37	-0.5
3,975,330	+		GFF3936	0.39	-1.4
3,975,349	-		GFF3936	0.41	+0.2
3,975,370	+		GFF3936	0.43	-1.9
3,975,378	-		GFF3936	0.44	-0.0
3,975,385	+		GFF3936	0.45	-1.4
3,975,385	+		GFF3936	0.45	+0.4
3,975,406	-		GFF3936	0.47	+0.7
3,975,408	+		GFF3936	0.47	+1.2
3,975,411	-		GFF3936	0.47	+1.2
3,975,417	+		GFF3936	0.48	-0.1
3,975,417	-		GFF3936	0.48	-1.7
3,975,431	+		GFF3936	0.49	+0.4
3,975,449	-		GFF3936	0.51	-1.4
3,975,536	-		GFF3936	0.60	-0.7
3,975,551	-		GFF3936	0.61	-0.8
3,975,583	+		GFF3936	0.64	+0.3
3,975,591	-		GFF3936	0.65	+0.1
3,975,591	-		GFF3936	0.65	-0.3
3,975,591	-		GFF3936	0.65	-0.4
3,975,623	+		GFF3936	0.68	-1.2
3,975,636	-		GFF3936	0.70	+0.4
3,975,646	-		GFF3936	0.71	-0.1
3,975,684	-		GFF3936	0.74	+1.0
3,975,706	+		GFF3936	0.77	-0.9
3,975,754	-		GFF3936	0.81	-1.2
3,975,758	+		GFF3936	0.82	-0.2
3,975,764	+		GFF3936	0.82	-0.2
3,975,796	-		GFF3936	0.86	-0.2
3,975,801	-		GFF3936	0.86	-0.9
3,975,870	+				-1.7
3,975,906	+				-1.5
3,975,908	-				-0.8
3,975,935	-				-1.4
3,975,937	-				-2.1
3,975,967	-				+1.6
3,975,970	+				-2.5
3,976,004	+				-0.8
3,976,007	+				-0.6
3,976,015	-				-0.1
3,976,033	+				-0.2
3,976,080	+				+0.2
3,976,080	+				-1.2
3,976,088	-				-0.8
3,976,088	-				-0.5
3,976,088	-				-0.9
3,976,088	-				-0.4
3,976,088	-				+0.1
3,976,098	-				-1.3
3,976,113	-				-0.5
3,976,145	+				-0.6
3,976,153	-				+0.7
3,976,179	+		GFF3937	0.10	-2.0
3,976,184	+		GFF3937	0.10	-1.5
3,976,192	-		GFF3937	0.11	-0.1
3,976,192	-		GFF3937	0.11	+0.9
3,976,197	-		GFF3937	0.11	+1.2
3,976,205	-		GFF3937	0.12	+0.9
3,976,225	+		GFF3937	0.13	-0.2
3,976,243	-		GFF3937	0.15	+1.3
3,976,278	-		GFF3937	0.17	-1.8
3,976,278	-		GFF3937	0.17	-0.6
3,976,278	-		GFF3937	0.17	+0.9
3,976,290	-		GFF3937	0.18	-1.7
3,976,310	-		GFF3937	0.20	-0.7
3,976,357	+		GFF3937	0.23	-1.4
3,976,380	-		GFF3937	0.25	-1.6
3,976,380	-		GFF3937	0.25	+1.0
3,976,395	-		GFF3937	0.26	+0.6
3,976,415	-		GFF3937	0.27	+0.9
3,976,429	+		GFF3937	0.28	-0.1
3,976,457	-		GFF3937	0.30	-0.4
3,976,475	-		GFF3937	0.32	-0.0
3,976,519	+		GFF3937	0.35	-2.0
3,976,521	+		GFF3937	0.35	-0.2
3,976,527	-		GFF3937	0.36	+1.1
3,976,529	-		GFF3937	0.36	+0.2
3,976,529	-		GFF3937	0.36	-0.6
3,976,529	-		GFF3937	0.36	-0.1
3,976,529	-		GFF3937	0.36	-0.6
3,976,542	+		GFF3937	0.37	-0.5
3,976,567	+		GFF3937	0.39	-1.2
3,976,575	-		GFF3937	0.39	+0.5
3,976,612	-		GFF3937	0.42	-1.4
3,976,642	-		GFF3937	0.44	+0.6
3,976,674	-		GFF3937	0.46	-0.7
3,976,687	+		GFF3937	0.47	+0.8
3,976,687	-		GFF3937	0.47	+0.4
3,976,701	-		GFF3937	0.48	-1.2
3,976,718	-		GFF3937	0.50	+0.2
3,976,718	-		GFF3937	0.50	-0.4
3,976,720	+		GFF3937	0.50	-0.2
3,976,720	+		GFF3937	0.50	+1.1
3,976,728	-		GFF3937	0.50	+0.6
3,976,728	-		GFF3937	0.50	-1.3
3,976,756	+		GFF3937	0.52	+0.1
3,976,762	+		GFF3937	0.53	-0.9
3,976,764	-		GFF3937	0.53	-0.3
3,976,792	-		GFF3937	0.55	-0.4
3,976,792	-		GFF3937	0.55	-0.5
3,976,792	-		GFF3937	0.55	-0.7
3,976,812	-		GFF3937	0.56	-0.9
3,976,816	+		GFF3937	0.57	-0.5
3,976,816	+		GFF3937	0.57	-1.8
3,976,859	-		GFF3937	0.60	-1.5
3,976,883	-		GFF3937	0.62	-1.4
3,976,908	+		GFF3937	0.64	-1.7
3,976,918	+		GFF3937	0.64	-1.4
3,976,936	+		GFF3937	0.66	-0.9
3,977,058	-		GFF3937	0.75	-0.9
3,977,102	-		GFF3937	0.78	-1.2
3,977,102	-		GFF3937	0.78	-0.2
3,977,110	+		GFF3937	0.78	-0.8
3,977,110	+		GFF3937	0.78	-0.8
3,977,110	+		GFF3937	0.78	+0.2
3,977,118	-		GFF3937	0.79	-0.4
3,977,118	-		GFF3937	0.79	-1.0
3,977,159	-		GFF3937	0.82	-1.2
3,977,162	-		GFF3937	0.82	-1.8
3,977,194	+		GFF3937	0.84	-2.1
3,977,227	+		GFF3937	0.87	-0.1
3,977,241	-		GFF3937	0.88	+0.6
3,977,320	+				-0.2
3,977,321	-				+1.2
3,977,349	-				+0.6
3,977,358	+				-0.5
3,977,412	+				+0.6
3,977,417	+				-0.7
3,977,471	-				-1.1
3,977,502	+		GFF3938	0.11	-0.3
3,977,515	+		GFF3938	0.13	-0.7
3,977,523	-		GFF3938	0.14	-0.2
3,977,534	+		GFF3938	0.16	+0.2
3,977,551	+		GFF3938	0.18	-0.3
3,977,662	+		GFF3938	0.33	-1.7
3,977,667	+		GFF3938	0.33	+0.2
3,977,675	-		GFF3938	0.34	+0.4
3,977,722	-		GFF3938	0.40	-1.2
3,977,782	-		GFF3938	0.48	+0.2
3,977,808	+		GFF3938	0.52	-1.7
3,977,816	-		GFF3938	0.53	-0.3
3,977,821	-		GFF3938	0.53	-0.4
3,977,821	-		GFF3938	0.53	-0.3
3,977,854	+		GFF3938	0.58	+1.1
3,977,854	+		GFF3938	0.58	-1.1
3,977,854	+		GFF3938	0.58	-2.4
3,977,854	+		GFF3938	0.58	+0.2
3,977,854	+		GFF3938	0.58	-0.3
3,977,854	+		GFF3938	0.58	+1.4
3,977,854	+		GFF3938	0.58	-1.0
3,977,854	+		GFF3938	0.58	+1.0
3,977,854	+		GFF3938	0.58	+0.6
3,977,854	+		GFF3938	0.58	+0.7
3,977,854	+		GFF3938	0.58	+0.1
3,977,859	+		GFF3938	0.58	-0.7
3,977,859	+		GFF3938	0.58	-1.4
3,977,859	+		GFF3938	0.58	-0.4
3,977,859	+		GFF3938	0.58	-0.3
3,977,859	+		GFF3938	0.58	+0.8
3,977,859	+		GFF3938	0.58	+0.8
3,977,860	-		GFF3938	0.59	+0.3
3,977,860	-		GFF3938	0.59	+0.0
3,977,862	-		GFF3938	0.59	+0.2
3,977,862	-		GFF3938	0.59	-0.4
3,977,862	-		GFF3938	0.59	-2.1
3,977,862	-		GFF3938	0.59	+0.0
3,977,862	-		GFF3938	0.59	-0.6
3,977,862	-		GFF3938	0.59	+0.2
3,977,862	-		GFF3938	0.59	-1.0
3,977,862	-		GFF3938	0.59	+0.2
3,977,867	-		GFF3938	0.60	+1.8
3,977,867	-		GFF3938	0.60	-0.9
3,977,867	-		GFF3938	0.60	+0.0
3,977,917	-		GFF3938	0.66	-0.5
3,977,985	-		GFF3938	0.75	+0.2
3,977,991	+		GFF3938	0.76	+0.7
3,977,999	-		GFF3938	0.77	-1.9
3,978,009	-		GFF3938	0.78	-0.8
3,978,020	+		GFF3938	0.80	-0.3
3,978,024	+		GFF3938	0.80	-0.2
3,978,046	-		GFF3938	0.83	-1.8
3,978,048	-		GFF3938	0.83	-0.7
3,978,059	+		GFF3938	0.85	-0.3
3,978,067	-		GFF3938	0.86	-0.4
3,978,072	-		GFF3938	0.87	-0.1
3,978,079	-		GFF3938	0.87	+0.5
3,978,079	-		GFF3938	0.87	-0.9
3,978,094	+		GFF3938	0.89	-0.2
3,978,117	+				-0.3
3,978,117	+				+0.6
3,978,117	+				-0.3
3,978,120	-				+0.7
3,978,124	+				-0.9
3,978,125	-				-0.4
3,978,127	+				-0.5
3,978,127	-				+0.2
3,978,129	+				-1.4
3,978,129	+				+0.0
3,978,129	+				+1.0
3,978,129	+				-0.2
3,978,135	-				-0.0
3,978,135	-				-0.1
3,978,135	-				-0.3
3,978,137	+				-1.8
3,978,137	-				-0.4
3,978,144	+				+0.7
3,978,149	+				-0.7
3,978,159	+				-1.2
3,978,162	-				-1.0
3,978,167	-				-0.9